Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0034515 Camellia sinensis var. sinensis HOM05D006660 ORTHO05D008184 0.0e+00 1191.4 598 100.0
Actinidia10783 Actinidia chinensis HOM05D006660 ORTHO05D008184 5.7e-296 1020.4 573 88.8
Rhsim04G0045800 Rhododendron simsii HOM05D006660 ORTHO05D008184 2.7e-290 1001.5 591 84.3
Nitab4.5_0000130g0170 Nicotiana tabacum HOM05D006660 ORTHO05D008184 2.5e-275 951.8 584 81.2
Nitab4.5_0008746g0020 Nicotiana tabacum HOM05D006660 ORTHO05D008184 7.2e-275 950.3 563 83.5
Thecc.01G186300 Theobroma cacao HOM05D006660 ORTHO05D008184 1.8e-273 945.7 579 82.6
Nn1g07385 Nelumbo nucifera HOM05D006660 ORTHO05D008184 8.2e-271 936.8 579 80.8
TAR626G1025 Trochodendron aralioides HOM05D006660 ORTHO05D008184 7.0e-270 933.7 572 82.0
Peaxi162Scf01333g00136 Petunia axillaris HOM05D006660 ORTHO05D008184 1.2e-269 932.9 586 80.7
CAN.G784.8 Capsicum annuum HOM05D006660 ORTHO05D008184 2.6e-269 931.8 563 81.5
TWI36G0095 Tripterygium wilfordii HOM05D006660 ORTHO05D008184 3.5e-269 931.4 582 80.6
RcHm_v2.0_Chr2g0157231 Rosa chinensis HOM05D006660 ORTHO05D008184 5.9e-269 930.6 571 81.4
Solyc07g049590.3 Solanum lycopersicum HOM05D006660 ORTHO05D008184 5.9e-269 930.6 564 81.7
Gorai.001G097700 Gossypium raimondii HOM05D006660 ORTHO05D008184 1.7e-268 929.1 573 80.6
Manes.12G060700 Manihot esculenta HOM05D006660 ORTHO05D008184 3.8e-268 927.9 577 80.9
Prupe.3G205300 Prunus persica HOM05D006660 ORTHO05D008184 5.0e-268 927.5 576 80.6
Sopen07g024990 Solanum pennellii HOM05D006660 ORTHO05D008184 6.5e-268 927.2 564 81.4
FAN14G2696 Fragaria x ananassa HOM05D006660 ORTHO05D008184 1.9e-267 925.6 577 79.9
FAN14G4026 Fragaria x ananassa HOM05D006660 ORTHO05D008184 1.9e-267 925.6 577 79.9
FAN02G1797 Fragaria x ananassa HOM05D006660 ORTHO05D008184 5.5e-267 924.1 576 80.0
Potri.014G163200 Populus trichocarpa HOM05D006660 ORTHO05D008184 5.5e-267 924.1 568 81.0
PGSC0003DMG400006428 Solanum tuberosum HOM05D006660 ORTHO05D008184 1.2e-266 922.9 564 81.2
FvH4_6g41550 Fragaria vesca HOM05D006660 ORTHO05D008184 8.0e-266 920.2 577 79.5
Cc10_g08860 Coffea canephora HOM05D006660 ORTHO05D008184 1.0e-265 919.8 581 78.7
PGR142G4370 Punica granatum HOM05D006660 ORTHO05D008184 3.0e-265 918.3 580 79.7
FAN05G5067 Fragaria x ananassa HOM05D006660 ORTHO05D008184 1.7e-263 912.5 576 79.5
Duzib133G0254 Durio zibethinus HOM05D006660 ORTHO05D008184 2.8e-263 911.8 575 79.5
Eucgr.K00713 Eucalyptus grandis HOM05D006660 ORTHO05D008184 6.3e-263 910.6 581 77.3
Atru.chr6.3323 Acer truncatum HOM05D006660 ORTHO05D008184 5.4e-262 907.5 578 79.4
Sabra14G0124600 Salix brachista HOM05D006660 ORTHO05D008184 5.4e-262 907.5 568 80.1
Ciclev10014722m.g Citrus clementina HOM05D006660 ORTHO05D008184 5.0e-260 901.0 583 78.9
DCAR_019721 Daucus carota HOM05D006660 ORTHO05D008184 1.5e-259 899.4 569 78.9
PSO541G2904 Papaver somniferum HOM05D006660 ORTHO05D008184 9.4e-259 896.7 575 76.3
CANSAT64G1453 Cannabis sativa HOM05D006660 ORTHO05D008184 1.2e-258 896.3 567 78.0
PSO675G7408 Papaver somniferum HOM05D006660 ORTHO05D008184 8.8e-257 890.2 575 76.2
arahy.Tifrunner.gnm1.ann1.V90YU5 Arachis hypogaea HOM05D006660 ORTHO05D008184 1.3e-255 886.3 568 78.7
HanXRQChr10g0306331 Helianthus annuus HOM05D006660 ORTHO05D008184 1.3e-255 886.3 564 77.7
arahy.Tifrunner.gnm1.ann1.7S53TL Arachis hypogaea HOM05D006660 ORTHO05D008184 4.9e-255 884.4 566 78.8
arahy.Tifrunner.gnm1.ann1.GN08CG Arachis hypogaea HOM05D006660 ORTHO05D008184 4.9e-255 884.4 566 78.8
Gohir.A07G086100 Gossypium hirsutum HOM05D006660 ORTHO05D008184 1.8e-254 882.5 573 77.7
Lsat_1_v5_gn_5_124741 Lactuca sativa HOM05D006660 ORTHO05D008184 1.6e-253 879.4 559 77.6
Ca_16352_v3 Cicer arietinum L. HOM05D006660 ORTHO05D008184 1.3e-252 876.3 580 76.7
Sc20g0003860 Simmondsia chinensis HOM05D006660 ORTHO05D008184 1.3e-252 876.3 578 76.5
Aqoxy1G02841 Aquilegia oxysepala HOM05D006660 ORTHO05D008184 2.9e-252 875.2 608 72.2
AUR62015095 Chenopodium quinoa HOM05D006660 ORTHO05D008184 3.8e-252 874.8 567 75.8
MSTRG.14936 Avicennia marina HOM05D006660 ORTHO05D008184 5.0e-252 874.4 571 76.2
MELO3C019360.2 Cucumis melo HOM05D006660 ORTHO05D008184 4.3e-251 871.3 571 78.1
Sed0019714 Sechium edule HOM05D006660 ORTHO05D008184 4.3e-251 871.3 586 76.8
Medtr3g082870 Medicago truncatula HOM05D006660 ORTHO05D008184 5.6e-251 870.9 586 75.1
TPR.G22464 Trifolium pratense HOM05D006660 ORTHO05D008184 7.2e-251 870.5 584 75.5
CsaV3_2G034260 Cucumis sativus L. HOM05D006660 ORTHO05D008184 4.7e-250 867.8 570 78.1
MBI16_g31717_MAGBIO Magnolia biondii HOM05D006660 ORTHO05D008184 1.2e-248 863.2 577 74.5
ClCG02G009540 Citrullus lanatus HOM05D006660 ORTHO05D008184 5.7e-248 860.9 594 74.9
Psat5g103920 Pisum sativum HOM05D006660 ORTHO05D008184 1.4e-246 856.3 613 72.1
THA.LOC104808860 Tarenaya hassleriana HOM05D006660 ORTHO05D008184 1.6e-245 852.8 570 74.6
Aa31sc53G10 Aethionema arabicum HOM05D006660 ORTHO05D008184 2.0e-245 852.4 573 72.8
Lj6g0000837 Lotus japonicus HOM05D006660 ORTHO05D008184 4.6e-245 851.3 566 76.5
Glyma.20G057100 Glycine max HOM05D006660 ORTHO05D008184 7.8e-245 850.5 567 75.5
FAN09G0285 Fragaria x ananassa HOM05D006660 ORTHO05D008184 1.3e-244 849.7 576 75.3
AL3G42350 Arabidopsis lyrata HOM05D006660 ORTHO05D008184 1.9e-243 845.9 580 72.4
Thhalv10002462m.g Eutrema salsugineum HOM05D006660 ORTHO05D008184 1.9e-243 845.9 573 72.9
Migut.M00006 Erythranthe guttata HOM05D006660 ORTHO05D008184 2.5e-243 845.5 574 75.1
COL.COLO4_35986 Corchorus olitorius HOM05D006660 ORTHO05D008184 5.6e-243 844.3 580 74.1
Sp3g23370 Schrenkiella parvula HOM05D006660 ORTHO05D008184 2.1e-242 842.4 581 71.3
AT2G04740 Arabidopsis thaliana HOM05D006660 ORTHO05D008184 4.7e-242 841.3 581 71.8
Carub.0003s2635 Capsella rubella HOM05D006660 ORTHO05D008184 1.0e-241 840.1 578 72.1
SGA_v2.0_scaffold73G24530 Striga asiatica HOM05D006660 ORTHO05D008184 5.8e-240 834.3 567 73.7
HPP92_017850 Vanilla planifolia HOM05D006660 ORTHO05D008184 7.5e-240 833.9 571 73.2
EL10Ac3g05658 Beta vulgaris HOM05D006660 ORTHO05D008184 4.9e-239 831.2 560 73.6
AUR62017555 Chenopodium quinoa HOM05D006660 ORTHO05D008184 4.9e-239 831.2 624 67.9
CARHR102690 Cardamine hirsuta HOM05D006660 ORTHO05D008184 7.0e-238 827.4 577 71.4
Ah.14g082930 Amaranthus hybridus HOM05D006660 ORTHO05D008184 4.6e-237 824.7 568 72.0
BcaC01g03192 Brassica carinata HOM05D006660 ORTHO05D008184 8.6e-236 820.5 581 70.2
BolC3t17779H Brassica oleracea HOM05D006660 ORTHO05D008184 5.2e-233 811.2 582 69.6
A03p44410 Brassica napus HOM05D006660 ORTHO05D008184 6.8e-233 810.8 581 69.7
C03p55040 Brassica napus HOM05D006660 ORTHO05D008184 6.8e-233 810.8 581 69.7
BcaB08g34485 Brassica carinata HOM05D006660 ORTHO05D008184 8.9e-233 810.4 576 70.5
BraA03t13574Z Brassica rapa HOM05D006660 ORTHO05D008184 9.8e-232 807.0 582 69.2
Haze_12725 Corylus avellana HOM05D006660 ORTHO05D008184 2.1e-221 772.7 467 83.1
vmacro09381 Vaccinium macrocarpon HOM05D006660 ORTHO05D008184 2.1e-218 762.7 448 86.4
ECA234G1491 Erigeron canadensis HOM05D006660 ORTHO05D008184 1.4e-217 760.0 561 69.3
CiPaw.04G193900 Carya illinoinensis HOM05D006660 ORTHO05D008184 2.2e-215 752.7 460 81.7
Zm00001eb281240 Zea mays HOM05D006660 ORTHO05D008184 1.6e-213 746.5 574 66.7
Os06g0318200 Oryza sativa ssp. japonica HOM05D006660 ORTHO05D008184 5.1e-212 741.5 568 67.4
SEGI_29705 Sequoiadendron giganteum HOM05D006660 ORTHO05D008184 7.1e-206 721.1 650 60.6
Dinv07831 Davidia involucrata HOM05D006660 ORTHO05D008184 1.6e-202 709.9 411 86.4
Cpa.g.sc132.76 Carica papaya HOM05D006660 ORTHO05D008184 5.3e-201 704.9 464 76.1
Lalb_Chr24g0402731 Lupinus albus HOM05D006660 ORTHO05D008184 5.7e-187 658.3 416 78.8
Gohir.D07G091200 Gossypium hirsutum HOM05D006660 ORTHO05D008184 2.6e-184 649.4 415 77.1
Oeu040482.1 Olea europaea HOM05D006660 ORTHO05D008184 3.8e-183 645.6 403 79.4
Mapoly0031s0110 Marchantia polymorpha HOM05D006660 ORTHO05D008184 1.0e-180 637.5 637 54.6
VMungo1309G1541 Vigna mungo HOM05D006660 ORTHO05D008184 2.2e-178 629.8 424 74.3
Pp3c5_19510 Physcomitrium patens HOM05D006660 ORTHO05D008184 2.4e-177 626.3 623 54.4
Pp3c5_19514 Physcomitrium patens HOM05D006660 ORTHO05D008184 2.4e-177 626.3 623 54.4
ATR0712G111 Amborella trichopoda HOM05D006660 ORTHO05D008184 3.3e-171 605.9 432 69.9
CDE07G0400 Ceratophyllum demersum HOM05D006660 ORTHO05D008184 7.4e-171 604.7 421 72.7
MD17G1109800 Malus domestica HOM05D006660 ORTHO05D008184 2.1e-165 586.6 576 56.9
Atru.chr6.3318 Acer truncatum HOM05D006660 ORTHO05D008184 2.6e-163 579.7 407 73.0
SMO353G0185 Selaginella moellendorffii HOM05D006660 ORTHO05D008184 1.6e-152 543.9 544 53.3
Lj8A132T54 Lonicera japonica HOM05D006660 ORTHO05D008184 1.8e-148 530.4 316 82.6
GSVIVG01030415001 Vitis vinifera HOM05D006660 ORTHO05D008184 8.8e-140 501.5 308 82.1
Hund08409 Selenicereus undatus HOM05D006660 ORTHO05D008184 4.4e-131 472.6 323 71.5
AagrBONN_evm.TU.Sc2ySwM_344.2917 Anthoceros agrestis HOM05D006660 ORTHO05D008184 1.9e-126 457.2 557 46.9
CBR_g47999 Chara braunii HOM05D006660 ORTHO05D008184 2.3e-119 433.7 657 40.3
Lj8C132T7 Lonicera japonica HOM05D006660 ORTHO05D008184 1.8e-116 424.1 239 88.7
GSVIVG01030416001 Vitis vinifera HOM05D006660 ORTHO05D008184 4.4e-99 366.3 200 89.5
CDE04G2012 Ceratophyllum demersum HOM05D006660 ORTHO05D008184 2.3e-79 300.8 566 36.7
Oeu040483.1 Olea europaea HOM05D006660 ORTHO05D008184 2.1e-77 294.3 187 81.3
AagrBONN_evm.TU.Sc2ySwM_228.2541 Anthoceros agrestis HOM05D006660 ORTHO05D008184 6.1e-64 249.6 417 37.6
CDE07G1994 Ceratophyllum demersum HOM05D006660 ORTHO05D008184 2.0e-59 234.6 145 76.6
ATR0712G102 Amborella trichopoda HOM05D006660 ORTHO05D008184 7.7e-59 232.6 137 78.8
Phvul.004G085870 Phaseolus vulgaris HOM05D006660 ORTHO05D008184 3.0e-55 220.7 124 83.9
VMungo1309G0792 Vigna mungo HOM05D006660 ORTHO05D008184 2.4e-52 211.1 162 66.7
Lalb_Chr24g0402711 Lupinus albus HOM05D006660 ORTHO05D008184 1.0e-47 195.7 104 89.4
Atru.chr6.3319 Acer truncatum HOM05D006660 ORTHO05D008184 7.4e-46 189.5 160 65.0
Cpa.g.sc987.1 Carica papaya HOM05D006660 ORTHO05D008184 3.5e-43 180.6 110 82.7
vmacro09380 Vaccinium macrocarpon HOM05D006660 ORTHO05D008184 1.4e-36 158.7 166 54.2
HanXRQChr08g0218831 Helianthus annuus HOM05D006660 ORTHO05D008184 1.2e-27 129.0 68 88.2
CDE04G2605 Ceratophyllum demersum HOM05D006660 ORTHO05D008184 1.4e-15 89.0 54 74.1
Cfa027280 Carpinus fangiana HOM05D006660 ORTHO05D008184 1.4e-12 79.0 448 23.4
Medtr7g094900 Medicago truncatula HOM05D002203 ORTHO05D002647 2.8e-08 64.7 218 25.7
Medtr7g094910 Medicago truncatula HOM05D002203 ORTHO05D002647 2.8e-08 64.7 218 25.7
Hund12162 Selenicereus undatus HOM05D002203 ORTHO05D002647 1.4e-07 62.4 267 23.2
Lj2A1172G32 Lonicera japonica HOM05D002203 ORTHO05D002647 4.0e-07 60.8 188 26.1
Os08g0523850 Oryza sativa ssp. japonica HOM05D000563 ORTHO05D008184 4.0e-07 60.8 148 31.8
Lj6C597G13 Lonicera japonica HOM05D002203 ORTHO05D002647 6.8e-07 60.1 279 25.1
Lsat_1_v5_gn_9_3640 Lactuca sativa HOM05D002203 ORTHO05D002647 3.4e-06 57.8 194 24.2
CiPaw.07G092100 Carya illinoinensis HOM05D002203 ORTHO05D002647 4.4e-06 57.4 218 24.8


User provided reference genes

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