Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0034480 Camellia sinensis var. sinensis HOM05D001499 ORTHO05D016851 2.0e-42 175.3 81 100.0
CSS0041606 Camellia sinensis var. sinensis HOM05D001499 ORTHO05D016851 1.1e-32 142.9 97 73.2
CSS0016411 Camellia sinensis var. sinensis HOM05D001499 ORTHO05D016851 7.0e-32 140.2 97 72.2
CSS0025031 Camellia sinensis var. sinensis HOM05D001499 ORTHO05D016851 7.8e-23 110.2 101 61.4
CSS0012974 Camellia sinensis var. sinensis HOM05D001499 ORTHO05D016851 3.3e-21 104.8 117 53.8
CSS0029731 Camellia sinensis var. sinensis HOM05D001499 ORTHO05D016851 1.1e-19 99.8 105 56.2
CSS0047957 Camellia sinensis var. sinensis HOM05D001499 ORTHO05D016851 4.4e-18 94.4 98 56.1
CSS0017141 Camellia sinensis var. sinensis HOM05D001499 ORTHO05D016851 7.5e-18 93.6 111 51.4
SGA_v2.0_scaffold273G46435 Striga asiatica HOM05D001499 ORTHO05D001560 2.9e-09 65.1 35 82.9
SGA_v2.0_scaffold94G28488 Striga asiatica HOM05D001499 ORTHO05D001560 6.4e-09 63.9 45 66.7
CSS0008595 Camellia sinensis var. sinensis HOM05D001499 ORTHO05D001560 4.6e-07 57.8 61 50.8
CSS0040554 Camellia sinensis var. sinensis HOM05D001499 ORTHO05D001560 4.6e-07 57.8 61 50.8
Ca_10365_v3 Cicer arietinum L. HOM05D001499 ORTHO05D001560 4.6e-07 57.8 61 50.8
Oeu008164.1 Olea europaea HOM05D001499 ORTHO05D001560 4.6e-07 57.8 61 50.8
Glyma.02G185300 Glycine max HOM05D001499 ORTHO05D001560 6.0e-07 57.4 61 49.2
Gohir.D03G069600 Gossypium hirsutum HOM05D001499 ORTHO05D001560 7.8e-07 57.0 61 52.5
Gorai.003G091100 Gossypium raimondii HOM05D001499 ORTHO05D001560 7.8e-07 57.0 61 52.5
Actinidia22801 Actinidia chinensis HOM05D001499 ORTHO05D001560 1.0e-06 56.6 61 49.2
CAN.G128.7 Capsicum annuum HOM05D001499 ORTHO05D001560 1.0e-06 56.6 61 50.8
Gohir.A02G107400 Gossypium hirsutum HOM05D001499 ORTHO05D001560 1.0e-06 56.6 61 50.8
PGR004G0169 Punica granatum HOM05D001499 ORTHO05D001560 1.0e-06 56.6 61 50.8
Duzib106G0340 Durio zibethinus HOM05D001499 ORTHO05D001560 1.3e-06 56.2 61 49.2
Migut.K00092 Erythranthe guttata HOM05D001499 ORTHO05D001560 1.3e-06 56.2 61 49.2
GSVIVG01033256001 Vitis vinifera HOM05D001499 ORTHO05D001560 1.3e-06 56.2 61 49.2
Duzib093G1808 Durio zibethinus HOM05D001499 ORTHO05D001560 1.7e-06 55.8 61 49.2
Lj5g0024774 Lotus japonicus HOM05D001499 ORTHO05D001560 1.7e-06 55.8 51 56.9
Lalb_Chr20g0110561 Lupinus albus HOM05D001499 ORTHO05D001560 1.7e-06 55.8 61 47.5
Phvul.007G251800 Phaseolus vulgaris HOM05D001499 ORTHO05D001560 1.7e-06 55.8 61 47.5
COL.COLO4_04401 Corchorus olitorius HOM05D001499 ORTHO05D001560 2.3e-06 55.5 51 56.9
Medtr1g053160 Medicago truncatula HOM05D001499 ORTHO05D001560 2.3e-06 55.5 61 50.8
TPR.G29104 Trifolium pratense HOM05D001499 ORTHO05D001560 2.3e-06 55.5 61 50.8
vmacro07834 Vaccinium macrocarpon HOM05D001499 ORTHO05D001560 2.3e-06 55.5 61 50.8
Cpa.g.sc967.2 Carica papaya HOM05D001499 ORTHO05D001560 3.0e-06 55.1 61 47.5
Cc06_g17670 Coffea canephora HOM05D001499 ORTHO05D001560 3.0e-06 55.1 51 52.9
Migut.J01745 Erythranthe guttata HOM05D001499 ORTHO05D001560 3.0e-06 55.1 51 56.9
FvH4_6g24270 Fragaria vesca HOM05D001499 ORTHO05D001560 3.0e-06 55.1 61 49.2
FAN02G2115 Fragaria x ananassa HOM05D001499 ORTHO05D001560 3.0e-06 55.1 61 49.2
FAN05G4798 Fragaria x ananassa HOM05D001499 ORTHO05D001560 3.0e-06 55.1 61 49.2
FAN09G3104 Fragaria x ananassa HOM05D001499 ORTHO05D001560 3.0e-06 55.1 61 49.2
FAN14G3970 Fragaria x ananassa HOM05D001499 ORTHO05D001560 3.0e-06 55.1 61 49.2
Glyma.10G113100 Glycine max HOM05D001499 ORTHO05D001560 3.0e-06 55.1 61 47.5
RcHm_v2.0_Chr3g0482921 Rosa chinensis HOM05D001499 ORTHO05D001560 3.0e-06 55.1 61 49.2
Thecc.05G149400 Theobroma cacao HOM05D001499 ORTHO05D001560 3.0e-06 55.1 61 47.5
VMungo0720G2024 Vigna mungo HOM05D001499 ORTHO05D001560 3.0e-06 55.1 51 54.9
arahy.Tifrunner.gnm1.ann1.GI5ZH0 Arachis hypogaea HOM05D001499 ORTHO05D001560 3.9e-06 54.7 51 54.9
arahy.Tifrunner.gnm1.ann1.K81J42 Arachis hypogaea HOM05D001499 ORTHO05D001560 3.9e-06 54.7 51 54.9
Nitab4.5_0000364g0080 Nicotiana tabacum HOM05D001499 ORTHO05D001560 3.9e-06 54.7 54 51.9
Nitab4.5_0003307g0080 Nicotiana tabacum HOM05D001499 ORTHO05D001560 3.9e-06 54.7 61 47.5
CiPaw.09G039100 Carya illinoinensis HOM05D001499 ORTHO05D001560 5.1e-06 54.3 61 47.5
Lju124C43T7 Lonicera japonica HOM05D001499 ORTHO05D001560 5.1e-06 54.3 61 49.2
Peaxi162Scf00109g00516 Petunia axillaris HOM05D001499 ORTHO05D001560 5.1e-06 54.3 61 47.5
Psat6g120840 Pisum sativum HOM05D001499 ORTHO05D001560 5.1e-06 54.3 51 56.9
Solyc10g080080.3 Solanum lycopersicum HOM05D001499 ORTHO05D001560 5.1e-06 54.3 61 47.5
Sopen10g030690 Solanum pennellii HOM05D001499 ORTHO05D001560 5.1e-06 54.3 61 47.5
TAR636G3397 Trochodendron aralioides HOM05D001499 ORTHO05D001560 5.1e-06 54.3 61 45.9
CDE09G1433 Ceratophyllum demersum HOM05D001499 ORTHO05D001560 6.6e-06 53.9 59 50.8
Eucgr.A02337 Eucalyptus grandis HOM05D001499 ORTHO05D001560 6.6e-06 53.9 51 54.9
Nn7g36317 Nelumbo nucifera HOM05D001499 ORTHO05D001560 6.6e-06 53.9 61 47.5
Prupe.7G056500 Prunus persica HOM05D001499 ORTHO05D001560 6.6e-06 53.9 61 47.5
Sc13g0001640 Simmondsia chinensis HOM05D001499 ORTHO05D001560 6.6e-06 53.9 61 47.5
PGSC0003DMG400023691 Solanum tuberosum HOM05D001499 ORTHO05D001560 6.6e-06 53.9 61 45.9
Aqoxy2G00225 Aquilegia oxysepala HOM05D001499 ORTHO05D001560 8.6e-06 53.5 61 50.8
ClCG04G003420 Citrullus lanatus HOM05D001499 ORTHO05D001560 8.6e-06 53.5 61 47.5
QL07p001098 Quercus lobata HOM05D000009 ORTHO05D000008 8.6e-06 53.5 64 43.8
Sed0013588 Sechium edule HOM05D001499 ORTHO05D001560 8.6e-06 53.5 61 45.9
TAR633G1315 Trochodendron aralioides HOM05D001499 ORTHO05D001560 8.6e-06 53.5 61 45.9


User provided reference genes

Program Settings