Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0034453 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 2.7e-103 378.6 184 100.0
CSS0048899 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 7.8e-63 244.2 186 65.1
CSS0043494 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 1.6e-55 219.9 185 60.5
CSS0037115 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 9.6e-53 210.7 202 55.9
CSS0039886 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 2.2e-25 119.8 159 39.0
RhsimUnG0047500 Rhododendron simsii HOM05D008183 ORTHO05D007254 7.2e-24 114.8 200 33.5
Rhsim07G0138700 Rhododendron simsii HOM05D000003 ORTHO05D000004 1.4e-22 110.5 146 41.1
Rhsim08G0082000 Rhododendron simsii HOM05D000003 ORTHO05D000006 3.9e-22 109.0 200 33.0
CSS0008839 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 5.1e-22 108.6 206 33.0
CSS0035533 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 7.4e-21 104.8 131 38.2
CSS0027326 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 1.7e-20 103.6 205 33.7
Rhsim13G0004500 Rhododendron simsii HOM05D008183 ORTHO05D007254 2.2e-20 103.2 201 34.3
Rhsim06G0103400 Rhododendron simsii HOM05D000003 ORTHO05D000004 2.8e-20 102.8 201 34.3
CSS0012014 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 4.8e-20 102.1 144 34.7
CSS0013917 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 6.3e-20 101.7 144 35.4
Rhsim01G0155500 Rhododendron simsii HOM05D000003 ORTHO05D007254 1.8e-19 100.1 201 33.8
CSS0024246 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 2.4e-19 99.8 202 33.2
CSS0023048 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 6.9e-19 98.2 130 36.9
Rhsim03G0084200 Rhododendron simsii HOM05D008183 ORTHO05D007254 2.6e-18 96.3 201 33.3
Rhsim03G0019700 Rhododendron simsii HOM05D008183 ORTHO05D007254 3.4e-18 95.9 153 35.3
Rhsim03G0019800 Rhododendron simsii HOM05D008183 ORTHO05D007254 3.4e-18 95.9 153 35.3
vmacro20957 Vaccinium macrocarpon HOM05D003698 ORTHO05D004320 5.9e-18 95.1 193 33.2
Rhsim04G0100600 Rhododendron simsii HOM05D000003 ORTHO05D000004 2.2e-17 93.2 177 35.0
CSS0000077 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 3.8e-17 92.4 132 35.6
CSS0016507 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 5.0e-17 92.0 130 36.9
Rhsim11G0009800 Rhododendron simsii HOM05D000003 ORTHO05D000004 5.0e-17 92.0 158 35.4
vmacro19083 Vaccinium macrocarpon HOM05D000458 ORTHO05D000951 8.5e-17 91.3 170 30.6
Rhsim01G0165600 Rhododendron simsii HOM05D000003 ORTHO05D007254 3.2e-16 89.4 200 30.5
vmacro21152 Vaccinium macrocarpon HOM05D003664 ORTHO05D003077 1.2e-15 87.4 132 35.6
vmacro20413 Vaccinium macrocarpon HOM05D000009 ORTHO05D000008 2.7e-15 86.3 202 29.7
CSS0013490 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 4.7e-15 85.5 142 35.9
Rhsim03G0007600 Rhododendron simsii HOM05D033359 ORTHO05D007254 3.0e-14 82.8 186 26.3
CSS0007562 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 8.8e-14 81.3 144 31.2
vmacro23070 Vaccinium macrocarpon HOM05D000626 ORTHO05D007254 3.3e-13 79.3 138 34.8
CSS0022949 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 9.7e-13 77.8 137 32.8
Rhsim01G0167200 Rhododendron simsii HOM05D000003 ORTHO05D007254 2.8e-12 76.3 151 33.1
Rhsim01G0063000 Rhododendron simsii HOM05D008183 ORTHO05D007254 6.3e-12 75.1 157 31.8
Rhsim01G0039500 Rhododendron simsii HOM05D000003 ORTHO05D007254 8.2e-12 74.7 184 29.3
COL.COLO4_07023 Corchorus olitorius HOM05D000003 ORTHO05D000004 1.1e-11 74.3 165 27.9
Rhsim02G0203700 Rhododendron simsii HOM05D000001 ORTHO05D009494 3.1e-11 72.8 145 33.1
Rhsim09G0146400 Rhododendron simsii HOM05D008183 ORTHO05D007254 4.1e-11 72.4 120 34.2
Lj5g0011892 Lotus japonicus HOM05D000003 ORTHO05D007254 1.2e-10 70.9 200 28.5
Eucgr.B00966 Eucalyptus grandis HOM05D008183 ORTHO05D007254 1.6e-10 70.5 175 29.7
FvH4_2g04612 Fragaria vesca HOM05D008133 ORTHO05D009449 1.6e-10 70.5 170 31.2
Lj1P1217T36 Lonicera japonica HOM05D008183 ORTHO05D007254 2.0e-10 70.1 134 30.6
FvH4_2g06831 Fragaria vesca HOM05D011824 ORTHO05D035622 3.5e-10 69.3 202 27.2
Lj5g0027405 Lotus japonicus HOM05D000003 ORTHO05D007254 3.5e-10 69.3 204 28.4
Lj4g0008388 Lotus japonicus HOM05D000003 ORTHO05D007254 4.5e-10 68.9 181 29.8
RcHm_v2.0_Chr5g0040851 Rosa chinensis HOM05D000003 ORTHO05D000004 4.5e-10 68.9 196 28.6
vmacro06821 Vaccinium macrocarpon HOM05D001548 ORTHO05D003901 4.5e-10 68.9 102 40.2
Rhsim01G0064200 Rhododendron simsii HOM05D008183 ORTHO05D007254 5.9e-10 68.6 169 32.0
Lj6g0001178 Lotus japonicus HOM05D000003 ORTHO05D000004 1.0e-09 67.8 204 28.4
Rhsim03G0017000 Rhododendron simsii HOM05D008183 ORTHO05D007254 1.0e-09 67.8 168 29.8
Rhsim03G0134300 Rhododendron simsii HOM05D008183 ORTHO05D007254 1.0e-09 67.8 148 31.1
vmacro06655 Vaccinium macrocarpon HOM05D003626 ORTHO05D004255 1.3e-09 67.4 131 32.8
CSS0001686 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 1.7e-09 67.0 89 39.3
Lj2g0001686 Lotus japonicus HOM05D000003 ORTHO05D007254 1.7e-09 67.0 204 27.0
CSS0041363 Camellia sinensis var. sinensis HOM05D001340 ORTHO05D002318 2.2e-09 66.6 111 35.1
Lj2g0015378 Lotus japonicus HOM05D000003 ORTHO05D000925 2.2e-09 66.6 158 28.5
CSS0048373 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 2.9e-09 66.2 152 29.6
Lj1g0005496 Lotus japonicus HOM05D000003 ORTHO05D007254 2.9e-09 66.2 152 28.9
Lj1g0019137 Lotus japonicus HOM05D000003 ORTHO05D007254 6.5e-09 65.1 154 29.2
Lj2C65T12 Lonicera japonica HOM05D008183 ORTHO05D007254 8.5e-09 64.7 148 31.1
Lj2g0023892 Lotus japonicus HOM05D000003 ORTHO05D007254 8.5e-09 64.7 153 27.5
CSS0027596 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 1.1e-08 64.3 134 29.1
Rhsim09G0012500 Rhododendron simsii HOM05D000003 ORTHO05D000004 1.1e-08 64.3 140 31.4
Lj2C40G9 Lonicera japonica HOM05D008183 ORTHO05D007254 1.9e-08 63.5 136 27.9
Prupe.6G141500 Prunus persica HOM05D000003 ORTHO05D000167 2.5e-08 63.2 169 32.0
FvH4_1g29601 Fragaria vesca HOM05D000003 ORTHO05D000004 3.2e-08 62.8 161 28.0
Lj3P1014T21 Lonicera japonica HOM05D008183 ORTHO05D007254 3.2e-08 62.8 126 30.2
Lj3g0000535 Lotus japonicus HOM05D000003 ORTHO05D007254 3.2e-08 62.8 153 28.1
LjContig00564g0011142 Lotus japonicus HOM05D000003 ORTHO05D007254 5.5e-08 62.0 177 27.1
vmacro05982 Vaccinium macrocarpon HOM05D002315 ORTHO05D002416 7.2e-08 61.6 84 33.3
Lju110C5T8 Lonicera japonica HOM05D008183 ORTHO05D007254 1.2e-07 60.8 148 30.4
Rhsim12G0010300 Rhododendron simsii HOM05D008183 ORTHO05D007254 2.1e-07 60.1 118 30.5
Lj1P289T15 Lonicera japonica HOM05D008183 ORTHO05D007254 2.7e-07 59.7 130 30.0
Lj2g0023475 Lotus japonicus HOM05D000003 ORTHO05D007254 2.7e-07 59.7 207 25.6
CSS0006002 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 3.6e-07 59.3 92 40.2
Rhsim06G0198700 Rhododendron simsii HOM05D006733 ORTHO05D008406 3.6e-07 59.3 126 30.2
CSS0035557 Camellia sinensis var. sinensis HOM05D000036 ORTHO05D000004 4.7e-07 58.9 55 47.3
COL.COLO4_28797 Corchorus olitorius HOM05D000003 ORTHO05D000004 4.7e-07 58.9 154 26.6
Atru.chr3.843 Acer truncatum HOM05D000003 ORTHO05D000167 6.1e-07 58.5 153 28.8
Rhsim11G0145000 Rhododendron simsii HOM05D003604 ORTHO05D004110 8.0e-07 58.2 107 35.5
Rhsim12G0012200 Rhododendron simsii HOM05D004564 ORTHO05D000827 8.0e-07 58.2 115 33.0
RcHm_v2.0_Chr1g0344541 Rosa chinensis HOM05D000003 ORTHO05D000004 8.0e-07 58.2 196 27.0
RcHm_v2.0_Chr1g0367181 Rosa chinensis HOM05D017965 ORTHO05D009449 8.0e-07 58.2 161 30.4
PSO832G2555 Papaver somniferum HOM05D001422 ORTHO05D001321 1.0e-06 57.8 93 34.4
Ah.12g061370 Amaranthus hybridus HOM05D000003 ORTHO05D000167 1.4e-06 57.4 202 25.7
CSS0019282 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 1.8e-06 57.0 95 34.7
Lj1g0020336 Lotus japonicus HOM05D000003 ORTHO05D007254 1.8e-06 57.0 195 27.7
RcHm_v2.0_Chr6g0249781 Rosa chinensis HOM05D000003 ORTHO05D000004 1.8e-06 57.0 164 27.4
Atru.chr13.1170 Acer truncatum HOM05D000003 ORTHO05D000167 3.0e-06 56.2 150 29.3
Lj2g0007703 Lotus japonicus HOM05D000003 ORTHO05D000126 3.0e-06 56.2 136 29.4
Lj4g0020141 Lotus japonicus HOM05D000003 ORTHO05D000126 4.0e-06 55.8 136 29.4
COL.COLO4_20392 Corchorus olitorius HOM05D000003 ORTHO05D000167 5.2e-06 55.5 146 26.7
QL09p017510 Quercus lobata HOM05D000003 ORTHO05D000004 6.7e-06 55.1 132 31.1
PSO832G3899 Papaver somniferum HOM05D003407 ORTHO05D001026 8.8e-06 54.7 133 28.6


User provided reference genes

Program Settings