Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0034435 Camellia sinensis var. sinensis HOM05D005224 ORTHO05D006372 2.4e-46 188.3 88 100.0
vmacro03691 Vaccinium macrocarpon HOM05D005224 ORTHO05D006372 1.7e-39 165.6 79 94.9
TWI23G0618 Tripterygium wilfordii HOM05D005224 ORTHO05D006372 1.4e-38 162.5 78 93.6
Cfa005919 Carpinus fangiana HOM05D005224 ORTHO05D006372 1.2e-37 159.5 77 92.2
Haze_04931 Corylus avellana HOM05D005224 ORTHO05D006372 1.2e-37 159.5 77 92.2
Manes.05G062300 Manihot esculenta HOM05D005224 ORTHO05D006372 1.2e-37 159.5 77 92.2
CARHR143080 Cardamine hirsuta HOM05D005224 ORTHO05D006372 2.7e-37 158.3 77 90.9
Phvul.001G207200 Phaseolus vulgaris HOM05D005224 ORTHO05D006372 2.7e-37 158.3 76 93.4
Sp4g29630 Schrenkiella parvula HOM05D005224 ORTHO05D006372 2.7e-37 158.3 77 90.9
Glyma.19G211200 Glycine max HOM05D005224 ORTHO05D006372 3.5e-37 157.9 76 93.4
Thhalv10001702m.g Eutrema salsugineum HOM05D005224 ORTHO05D006372 6.0e-37 157.1 77 89.6
THA.LOC104817499 Tarenaya hassleriana HOM05D005224 ORTHO05D006372 1.0e-36 156.4 77 89.6
TAR365G0183 Trochodendron aralioides HOM05D005224 ORTHO05D006372 1.0e-36 156.4 76 92.1
Glyma.03G214500 Glycine max HOM05D005224 ORTHO05D006372 1.3e-36 156.0 76 92.1
Thecc.01G299700 Theobroma cacao HOM05D005224 ORTHO05D006372 1.3e-36 156.0 77 90.9
AT2G47690 Arabidopsis thaliana HOM05D005224 ORTHO05D006372 1.8e-36 155.6 77 89.6
Cc04_g11150 Coffea canephora HOM05D005224 ORTHO05D006372 1.8e-36 155.6 76 90.8
BcaC07g40762 Brassica carinata HOM05D005224 ORTHO05D006372 2.3e-36 155.2 77 89.6
BcaC07g42731 Brassica carinata HOM05D005224 ORTHO05D006372 2.3e-36 155.2 77 89.6
A09p54640 Brassica napus HOM05D005224 ORTHO05D006372 2.3e-36 155.2 77 89.6
C08p37540 Brassica napus HOM05D005224 ORTHO05D006372 2.3e-36 155.2 77 89.6
BraA09t40875Z Brassica rapa HOM05D005224 ORTHO05D006372 2.3e-36 155.2 77 89.6
Thhalv10006347m.g Eutrema salsugineum HOM05D005224 ORTHO05D006372 2.3e-36 155.2 77 89.6
Sp5g00730 Schrenkiella parvula HOM05D005224 ORTHO05D006372 2.3e-36 155.2 77 89.6
Actinidia24346 Actinidia chinensis HOM05D001413 ORTHO05D001385 3.0e-36 154.8 74 95.9
AL5G45570 Arabidopsis lyrata HOM05D005224 ORTHO05D006372 3.0e-36 154.8 77 89.6
AT3G62790 Arabidopsis thaliana HOM05D005224 ORTHO05D006372 3.0e-36 154.8 77 89.6
BcaB02g08753 Brassica carinata HOM05D005224 ORTHO05D006372 3.0e-36 154.8 77 89.6
BcaNung06420 Brassica carinata HOM05D005224 ORTHO05D006372 3.0e-36 154.8 77 89.6
Carub.0005s2944 Capsella rubella HOM05D005224 ORTHO05D006372 3.0e-36 154.8 77 89.6
Duzib133G0273 Durio zibethinus HOM05D005224 ORTHO05D006372 3.0e-36 154.8 77 90.9
AL4G47260 Arabidopsis lyrata HOM05D005224 ORTHO05D006372 3.9e-36 154.5 77 89.6
Aa31LG1G29010 Aethionema arabicum HOM05D005224 ORTHO05D006372 5.1e-36 154.1 77 88.3
Dinv44366 Davidia involucrata HOM05D005224 ORTHO05D006372 6.7e-36 153.7 78 91.0
CANSAT25G2283 Cannabis sativa HOM05D005224 ORTHO05D006372 8.7e-36 153.3 78 87.2
Carub.0004s3041 Capsella rubella HOM05D005224 ORTHO05D006372 8.7e-36 153.3 77 88.3
ECA246G3542 Erigeron canadensis HOM05D005224 ORTHO05D006372 8.7e-36 153.3 77 90.9
HanXRQChr06g0173941 Helianthus annuus HOM05D005224 ORTHO05D006372 8.7e-36 153.3 77 90.9
HanXRQChr17g0538761 Helianthus annuus HOM05D005224 ORTHO05D006372 8.7e-36 153.3 77 90.9
TWI14G1007 Tripterygium wilfordii HOM05D005224 ORTHO05D006372 8.7e-36 153.3 77 88.3
A07p26090 Brassica napus HOM05D005224 ORTHO05D006372 1.5e-35 152.5 84 82.1
Manes.01G218400 Manihot esculenta HOM05D005224 ORTHO05D006372 1.5e-35 152.5 75 90.7
Psat3g022120 Pisum sativum HOM05D005224 ORTHO05D006372 1.5e-35 152.5 79 86.1
Hund11874 Selenicereus undatus HOM05D005224 ORTHO05D006372 1.5e-35 152.5 77 90.9
CARHR173060 Cardamine hirsuta HOM05D005224 ORTHO05D006372 1.9e-35 152.1 78 87.2
Dinv29760 Davidia involucrata HOM05D005224 ORTHO05D006372 1.9e-35 152.1 73 93.2
Duzib211G0376 Durio zibethinus HOM05D005224 ORTHO05D006372 1.9e-35 152.1 77 89.6
Gohir.A08G075800 Gossypium hirsutum HOM05D005224 ORTHO05D006372 1.9e-35 152.1 77 87.0
Gorai.004G089700 Gossypium raimondii HOM05D005224 ORTHO05D006372 1.9e-35 152.1 77 87.0
Lsat_1_v5_gn_3_24761 Lactuca sativa HOM05D005224 ORTHO05D006372 1.9e-35 152.1 75 90.7
Nn4g25791 Nelumbo nucifera HOM05D005224 ORTHO05D006372 1.9e-35 152.1 76 89.5
Potri.014G129600 Populus trichocarpa HOM05D005224 ORTHO05D006372 1.9e-35 152.1 77 89.6
Medtr7g108810 Medicago truncatula HOM05D001413 ORTHO05D001385 2.5e-35 151.8 79 84.8
Actinidia32220 Actinidia chinensis HOM05D005224 ORTHO05D006372 3.3e-35 151.4 76 90.8
Gohir.A12G130700 Gossypium hirsutum HOM05D005224 ORTHO05D006372 3.3e-35 151.4 75 90.7
Gohir.D12G134600 Gossypium hirsutum HOM05D005224 ORTHO05D006372 3.3e-35 151.4 75 90.7
Gorai.008G145500 Gossypium raimondii HOM05D005224 ORTHO05D006372 3.3e-35 151.4 75 90.7
Lj1g0012977 Lotus japonicus HOM05D005224 ORTHO05D006372 3.3e-35 151.4 79 84.8
MD03G1287600 Malus domestica HOM05D005224 ORTHO05D006372 3.3e-35 151.4 78 87.2
Aqoxy2G02950 Aquilegia oxysepala HOM05D005224 ORTHO05D006372 4.3e-35 151.0 75 88.0
BcaB02g07318 Brassica carinata HOM05D005224 ORTHO05D006372 4.3e-35 151.0 78 87.2
Cpa.g.sc19.280 Carica papaya HOM05D005224 ORTHO05D006372 4.3e-35 151.0 78 85.9
DCAR_027069 Daucus carota HOM05D005224 ORTHO05D006372 4.3e-35 151.0 73 93.2
BolC6t38010H Brassica oleracea HOM05D005224 ORTHO05D006372 5.6e-35 150.6 78 85.9
ClCG10G010880 Citrullus lanatus HOM05D005224 ORTHO05D006372 5.6e-35 150.6 75 89.3
Migut.D00213 Erythranthe guttata HOM05D005224 ORTHO05D006372 5.6e-35 150.6 76 90.8
Gohir.A08G042400 Gossypium hirsutum HOM05D005224 ORTHO05D006372 5.6e-35 150.6 75 90.7
Gohir.D08G052200 Gossypium hirsutum HOM05D005224 ORTHO05D006372 5.6e-35 150.6 75 90.7
Gohir.D08G085200 Gossypium hirsutum HOM05D005224 ORTHO05D006372 5.6e-35 150.6 77 85.7
Gorai.004G052300 Gossypium raimondii HOM05D005224 ORTHO05D006372 5.6e-35 150.6 75 90.7
Lalb_Chr04g0259841 Lupinus albus HOM05D005224 ORTHO05D006372 5.6e-35 150.6 76 88.2
CDE09G0321 Ceratophyllum demersum HOM05D005224 ORTHO05D006372 7.4e-35 150.2 74 90.5
Eucgr.K03475 Eucalyptus grandis HOM05D005224 ORTHO05D006372 7.4e-35 150.2 77 89.6
Prupe.8G260800 Prunus persica HOM05D005224 ORTHO05D006372 7.4e-35 150.2 78 85.9
RcHm_v2.0_Chr6g0293941 Rosa chinensis HOM05D005224 ORTHO05D006372 7.4e-35 150.2 76 90.8
BcaC02g12549 Brassica carinata HOM05D005224 ORTHO05D006372 9.6e-35 149.8 74 89.2
C04p00180 Brassica napus HOM05D005224 ORTHO05D006372 9.6e-35 149.8 74 89.2
BolC4t21665H Brassica oleracea HOM05D005224 ORTHO05D006372 9.6e-35 149.8 74 89.2
BraA05t19024Z Brassica rapa HOM05D005224 ORTHO05D006372 9.6e-35 149.8 74 89.2
CDE02G3260 Ceratophyllum demersum HOM05D005224 ORTHO05D006372 9.6e-35 149.8 74 90.5
TPR.G9599 Trifolium pratense HOM05D005224 ORTHO05D006372 9.6e-35 149.8 78 84.6
GSVIVG01035146001 Vitis vinifera HOM05D005224 ORTHO05D006372 9.6e-35 149.8 77 87.0
ATR0796G245 Amborella trichopoda HOM05D005224 ORTHO05D006372 1.3e-34 149.4 82 82.9
FvH4_2g25680 Fragaria vesca HOM05D005224 ORTHO05D006372 1.3e-34 149.4 76 89.5
FAN15G2088 Fragaria x ananassa HOM05D005224 ORTHO05D006372 1.3e-34 149.4 76 89.5
FAN20G0551 Fragaria x ananassa HOM05D005224 ORTHO05D006372 1.3e-34 149.4 76 89.5
FAN27G2170 Fragaria x ananassa HOM05D005224 ORTHO05D006372 1.3e-34 149.4 76 89.5
Hma1.2p1_1185F.1_g264980 Hydrangea macrophylla HOM05D005224 ORTHO05D006372 1.3e-34 149.4 78 88.5
unitig_0.g663 Utricularia gibba HOM05D005224 ORTHO05D006372 1.3e-34 149.4 76 89.5
C06p28410 Brassica napus HOM05D005224 ORTHO05D006372 1.6e-34 149.1 78 85.9
Sed0018249 Sechium edule HOM05D005224 ORTHO05D006372 1.6e-34 149.1 75 88.0
Sed0019318 Sechium edule HOM05D005224 ORTHO05D006372 1.6e-34 149.1 75 88.0
HPP92_017223 Vanilla planifolia HOM05D005224 ORTHO05D006372 1.6e-34 149.1 74 89.2
Ah.02g128370 Amaranthus hybridus HOM05D005224 ORTHO05D006372 2.1e-34 148.7 73 90.4
A05p00270 Brassica napus HOM05D005224 ORTHO05D006372 2.1e-34 148.7 74 87.8
Ciclev10033216m.g Citrus clementina HOM05D005224 ORTHO05D006372 2.8e-34 148.3 78 85.9
MBI18_g06871_MAGBIO Magnolia biondii HOM05D005224 ORTHO05D006372 2.8e-34 148.3 71 93.0
PSO210G2815 Papaver somniferum HOM05D005224 ORTHO05D006372 2.8e-34 148.3 73 91.8
Migut.D02475 Erythranthe guttata HOM05D005224 ORTHO05D006372 3.7e-34 147.9 76 88.2
PSO210G7006 Papaver somniferum HOM05D005224 ORTHO05D006372 3.7e-34 147.9 75 88.0
Potri.002G204800 Populus trichocarpa HOM05D005224 ORTHO05D006372 3.7e-34 147.9 71 91.5
CsaV3_4G000760 Cucumis sativus L. HOM05D005224 ORTHO05D006372 4.8e-34 147.5 75 88.0
PSO832G3231 Papaver somniferum HOM05D005224 ORTHO05D006372 4.8e-34 147.5 78 88.5
PGR042G0105 Punica granatum HOM05D005224 ORTHO05D006372 4.8e-34 147.5 71 93.0
Sc25g0004000 Simmondsia chinensis HOM05D005224 ORTHO05D006372 4.8e-34 147.5 97 74.2
EL10Ac3g05917 Beta vulgaris HOM05D005224 ORTHO05D006372 6.2e-34 147.1 77 85.7
QL12p028550 Quercus lobata HOM05D005224 ORTHO05D006372 6.2e-34 147.1 75 86.7
arahy.Tifrunner.gnm1.ann1.8KN71Z Arachis hypogaea HOM05D005224 ORTHO05D006372 1.1e-33 146.4 74 87.8
arahy.Tifrunner.gnm1.ann1.EEQ3S4 Arachis hypogaea HOM05D005224 ORTHO05D006372 1.1e-33 146.4 74 87.8
arahy.Tifrunner.gnm1.ann1.U5VDRT Arachis hypogaea HOM05D005224 ORTHO05D006372 1.1e-33 146.4 74 87.8
Lalb_Chr15g0078521 Lupinus albus HOM05D005224 ORTHO05D006372 1.1e-33 146.4 76 85.5
PSO170G2085 Papaver somniferum HOM05D005224 ORTHO05D006372 1.1e-33 146.4 75 86.7
Zm00001eb039670 Zea mays HOM05D005224 ORTHO05D006372 1.4e-33 146.0 74 86.5
MELO3C017960.2 Cucumis melo HOM05D005224 ORTHO05D006372 5.3e-33 144.1 75 84.0
CiPaw.07G108200 Carya illinoinensis HOM05D005224 ORTHO05D006372 6.9e-33 143.7 75 85.3
Nitab4.5_0011375g0020 Nicotiana tabacum HOM05D005224 ORTHO05D006372 1.5e-32 142.5 69 89.9
Os08g0556600 Oryza sativa ssp. japonica HOM05D005224 ORTHO05D006372 4.5e-32 141.0 74 83.8
Peaxi162Scf00589g00224 Petunia axillaris HOM05D005224 ORTHO05D006372 1.7e-31 139.0 65 92.3
COL.COLO4_23352 Corchorus olitorius HOM05D005224 ORTHO05D006372 4.9e-31 137.5 96 69.8
TAR370G0003 Trochodendron aralioides HOM05D005224 ORTHO05D006372 1.4e-30 136.0 63 93.7
ECA240G1836 Erigeron canadensis HOM05D002891 ORTHO05D003369 4.2e-30 134.4 70 88.6
Solyc11g005880.2 Solanum lycopersicum HOM05D005224 ORTHO05D006372 7.1e-30 133.7 62 91.9
Sopen11g001830 Solanum pennellii HOM05D005224 ORTHO05D006372 7.1e-30 133.7 62 91.9
Nitab4.5_0000805g0100 Nicotiana tabacum HOM05D005224 ORTHO05D006372 1.6e-29 132.5 61 91.8
SalBow3G4056 Salvia bowleyana HOM05D005224 ORTHO05D006372 2.1e-29 132.1 107 64.5
PGSC0003DMG400028681 Solanum tuberosum HOM05D005224 ORTHO05D006372 2.1e-29 132.1 61 91.8
SHI19781 Sapria himalayana HOM05D005224 ORTHO05D006372 7.9e-29 130.2 73 76.7
CAN.G652.1 Capsicum annuum HOM05D005224 ORTHO05D006372 1.3e-28 129.4 60 90.0
BcaC08g45239 Brassica carinata HOM05D005224 ORTHO05D006372 5.6e-27 124.0 57 91.2
Oeu054123.1 Olea europaea HOM05D005224 ORTHO05D006372 4.5e-24 114.4 50 96.0
TAR633G1838 Trochodendron aralioides HOM05D005224 ORTHO05D006372 4.5e-24 114.4 63 81.0
BraA07t30257Z Brassica rapa HOM05D005224 ORTHO05D006372 1.3e-23 112.8 50 94.0
HanXRQChr08g0223921 Helianthus annuus HOM05D005224 ORTHO05D006372 2.2e-23 112.1 50 94.0
HanXRQChr09g0263651 Helianthus annuus HOM05D005224 ORTHO05D006372 8.4e-23 110.2 50 92.0
CBR_g52287 Chara braunii HOM05D005224 ORTHO05D006372 1.6e-21 105.9 77 63.6
MD02G1095800 Malus domestica HOM05D005224 ORTHO05D006372 2.7e-21 105.1 49 87.8
Mapoly0155s0025 Marchantia polymorpha HOM05D005224 ORTHO05D006372 2.3e-20 102.1 76 64.5
CiPaw.08G095500 Carya illinoinensis HOM05D005224 ORTHO05D006372 9.7e-19 96.7 51 88.2
Pp3c11_13470 Physcomitrium patens HOM05D005224 ORTHO05D006372 9.7e-19 96.7 64 62.5
Pp3c7_20680 Physcomitrium patens HOM05D005224 ORTHO05D006372 9.7e-19 96.7 64 62.5
AagrBONN_evm.TU.Sc2ySwM_344.1353 Anthoceros agrestis HOM05D005224 ORTHO05D006372 2.8e-18 95.1 73 60.3
MCO16G429 Micromonas commoda HOM05D005224 ORTHO05D006372 1.2e-13 79.7 87 47.1
arahy.Tifrunner.gnm1.ann1.YEW5FF Arachis hypogaea HOM05D005224 ORTHO05D006372 6.5e-07 57.4 29 82.8
AUR62015428 Chenopodium quinoa HOM05D005224 ORTHO05D006372 4.2e-06 54.7 23 91.3


User provided reference genes

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