Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0034427 Camellia sinensis var. sinensis HOM05D004361 ORTHO05D004706 1.1e-108 396.7 212 100.0
Dinv17836 Davidia involucrata HOM05D004361 ORTHO05D004706 1.8e-66 256.5 203 69.5
CSS0045436 Camellia sinensis var. sinensis HOM05D004361 ORTHO05D004706 1.8e-63 246.5 214 66.4
Actinidia05535 Actinidia chinensis HOM05D004361 ORTHO05D004706 4.5e-62 241.9 214 67.3
vmacro03710 Vaccinium macrocarpon HOM05D004361 ORTHO05D004706 1.8e-58 229.9 215 64.2
Actinidia14236 Actinidia chinensis HOM05D004361 ORTHO05D004706 2.8e-56 222.6 203 64.0
Actinidia11836 Actinidia chinensis HOM05D004361 ORTHO05D004706 1.4e-55 220.3 213 63.8
vmacro15833 Vaccinium macrocarpon HOM05D004361 ORTHO05D004706 2.7e-51 206.1 218 60.6
Rhsim02G0112300 Rhododendron simsii HOM05D004361 ORTHO05D004706 2.5e-49 199.5 209 60.8
Dinv20012 Davidia involucrata HOM05D004361 ORTHO05D004706 1.4e-47 193.7 172 65.7
Cfa000279 Carpinus fangiana HOM05D004361 ORTHO05D004706 1.8e-47 193.4 212 57.1
Manes.16G012800 Manihot esculenta HOM05D004361 ORTHO05D004706 1.8e-47 193.4 217 57.6
Haze_06732 Corylus avellana HOM05D004361 ORTHO05D004706 6.9e-47 191.4 213 57.7
Haze_06736 Corylus avellana HOM05D004361 ORTHO05D004706 3.4e-46 189.1 213 57.3
Thecc.06G213600 Theobroma cacao HOM05D004361 ORTHO05D004706 4.5e-46 188.7 215 54.9
COL.COLO4_31721 Corchorus olitorius HOM05D004361 ORTHO05D004706 2.2e-45 186.4 221 54.3
Duzib192G0487 Durio zibethinus HOM05D004361 ORTHO05D004706 1.4e-44 183.7 218 53.2
Duzib235G0682 Durio zibethinus HOM05D004361 ORTHO05D004706 2.5e-44 183.0 216 55.1
Nitab4.5_0006795g0040 Nicotiana tabacum HOM05D004361 ORTHO05D004706 7.2e-44 181.4 196 56.6
Prupe.4G026600 Prunus persica HOM05D004361 ORTHO05D004706 9.4e-44 181.0 211 53.1
QL05p075222 Quercus lobata HOM05D004361 ORTHO05D004706 9.4e-44 181.0 194 58.2
RcHm_v2.0_Chr5g0004031 Rosa chinensis HOM05D004361 ORTHO05D004706 9.4e-44 181.0 212 53.3
Peaxi162Scf00678g00313 Petunia axillaris HOM05D004361 ORTHO05D004706 1.2e-43 180.6 188 56.9
CAN.G569.44 Capsicum annuum HOM05D004361 ORTHO05D004706 1.6e-43 180.3 194 56.2
MSTRG.15964 Avicennia marina HOM05D004361 ORTHO05D004706 2.1e-43 179.9 210 53.3
VMungo0720G0988 Vigna mungo HOM05D004361 ORTHO05D004706 6.1e-43 178.3 206 51.0
Actinidia26950 Actinidia chinensis HOM05D004361 ORTHO05D004706 1.8e-42 176.8 162 62.3
Hma1.2p1_0091F.1_g046140 Hydrangea macrophylla HOM05D004361 ORTHO05D004706 2.3e-42 176.4 173 61.8
GSVIVG01012625001 Vitis vinifera HOM05D004361 ORTHO05D004706 2.3e-42 176.4 196 55.1
FvH4_3g02690 Fragaria vesca HOM05D004361 ORTHO05D004706 2.0e-41 173.3 213 52.1
FAN25G3407 Fragaria x ananassa HOM05D004361 ORTHO05D004706 4.4e-41 172.2 213 52.1
MD10G1314300 Malus domestica HOM05D004361 ORTHO05D004706 7.4e-41 171.4 213 54.5
FAN21G0156 Fragaria x ananassa HOM05D004361 ORTHO05D004706 1.3e-40 170.6 213 51.2
Cc00_g17930 Coffea canephora HOM05D004361 ORTHO05D004706 1.7e-40 170.2 223 54.7
MSTRG.7243 Avicennia marina HOM05D004361 ORTHO05D004706 4.8e-40 168.7 201 51.2
MD05G1340800 Malus domestica HOM05D004361 ORTHO05D004706 4.8e-40 168.7 213 53.5
Phvul.007G051800 Phaseolus vulgaris HOM05D004361 ORTHO05D004706 4.8e-40 168.7 208 50.5
Gohir.A06G145600 Gossypium hirsutum HOM05D004361 ORTHO05D004706 6.3e-40 168.3 213 51.6
Glyma.20G141000 Glycine max HOM05D004361 ORTHO05D004706 4.1e-39 165.6 201 50.2
Glyma.10G252400 Glycine max HOM05D004361 ORTHO05D004706 9.1e-39 164.5 198 51.0
Lalb_Chr02g0144581 Lupinus albus HOM05D004361 ORTHO05D004706 1.2e-38 164.1 211 49.3
Cpa.g.sc198.2 Carica papaya HOM05D004361 ORTHO05D004706 2.0e-38 163.3 202 50.5
Gohir.D06G151500 Gossypium hirsutum HOM05D004361 ORTHO05D004706 2.6e-38 162.9 213 49.8
TWI38G1626 Tripterygium wilfordii HOM05D004361 ORTHO05D004706 2.6e-38 162.9 210 51.0
Gorai.010G176700 Gossypium raimondii HOM05D004361 ORTHO05D004706 3.5e-38 162.5 213 49.8
PGSC0003DMG400002067 Solanum tuberosum HOM05D004361 ORTHO05D004706 5.9e-38 161.8 198 52.0
Potri.011G026900 Populus trichocarpa HOM05D004361 ORTHO05D004706 7.7e-38 161.4 194 53.6
TAR626G1160 Trochodendron aralioides HOM05D004361 ORTHO05D004706 1.7e-37 160.2 212 53.3
TAR629G1557 Trochodendron aralioides HOM05D004361 ORTHO05D004706 2.2e-37 159.8 198 57.1
CiPaw.09G086700 Carya illinoinensis HOM05D004361 ORTHO05D004706 2.5e-36 156.4 216 52.3
Solyc02g080110.3 Solanum lycopersicum HOM05D004361 ORTHO05D004706 4.2e-36 155.6 188 52.7
Sopen02g024830 Solanum pennellii HOM05D004361 ORTHO05D004706 2.7e-35 152.9 184 53.3
Manes.17G034800 Manihot esculenta HOM05D004361 ORTHO05D004706 8.0e-35 151.4 194 51.5
CANSAT56G2280 Cannabis sativa HOM05D004361 ORTHO05D004706 1.4e-34 150.6 214 50.9
Migut.M01277 Erythranthe guttata HOM05D004361 ORTHO05D004706 1.8e-34 150.2 217 47.0
Glyma.11G003100 Glycine max HOM05D004361 ORTHO05D004706 1.8e-34 150.2 207 51.2
Oeu002714.1 Olea europaea HOM05D004361 ORTHO05D004706 1.8e-34 150.2 204 47.5
Medtr1g105555 Medicago truncatula HOM05D004361 ORTHO05D004706 3.0e-34 149.4 209 46.9
TWI38G0935 Tripterygium wilfordii HOM05D004361 ORTHO05D004706 3.0e-34 149.4 213 50.7
Sabra04G0012700 Salix brachista HOM05D004361 ORTHO05D004706 3.3e-33 146.0 189 52.4
Gohir.A06G208100 Gossypium hirsutum HOM05D004361 ORTHO05D004706 1.7e-32 143.7 211 44.5
MSTRG.13161 Avicennia marina HOM05D004361 ORTHO05D004706 6.3e-32 141.7 202 46.5
Nitab4.5_0002847g0010 Nicotiana tabacum HOM05D004361 ORTHO05D004706 6.3e-32 141.7 166 52.4
Glyma.01G240500 Glycine max HOM05D004361 ORTHO05D004706 8.2e-32 141.4 206 46.6
Oeu026856.1 Olea europaea HOM05D004361 ORTHO05D004706 8.2e-32 141.4 213 44.6
arahy.Tifrunner.gnm1.ann1.F31F99 Arachis hypogaea HOM05D004361 ORTHO05D004706 1.4e-31 140.6 218 44.5
CiPaw.10G068100 Carya illinoinensis HOM05D004361 ORTHO05D004706 2.4e-31 139.8 221 46.6
Gohir.D06G213000 Gossypium hirsutum HOM05D004361 ORTHO05D004706 3.1e-31 139.4 211 44.1
Gorai.010G253100 Gossypium raimondii HOM05D004361 ORTHO05D004706 7.0e-31 138.3 219 42.5
Sc05g0008860 Simmondsia chinensis HOM05D004361 ORTHO05D004706 7.0e-31 138.3 191 50.8
Lsat_1_v5_gn_4_57760 Lactuca sativa HOM05D004361 ORTHO05D004706 1.2e-30 137.5 192 50.0
Psat6g210400 Pisum sativum HOM05D004361 ORTHO05D004706 2.7e-30 136.3 212 46.7
Lj5g0000713 Lotus japonicus HOM05D004361 ORTHO05D004706 4.5e-30 135.6 188 45.2
PGR004G2667 Punica granatum HOM05D004361 ORTHO05D004706 7.7e-30 134.8 186 50.5
Hund23516 Selenicereus undatus HOM05D004361 ORTHO05D004706 7.7e-30 134.8 213 46.5
Lalb_Chr21g0307851 Lupinus albus HOM05D004361 ORTHO05D004706 1.0e-29 134.4 181 47.0
Eucgr.D00816 Eucalyptus grandis HOM05D004361 ORTHO05D004706 1.3e-29 134.0 198 49.0
Nitab4.5_0001686g0040 Nicotiana tabacum HOM05D004361 ORTHO05D004706 2.9e-29 132.9 168 53.0
Phvul.002G049100 Phaseolus vulgaris HOM05D004361 ORTHO05D004706 1.1e-28 131.0 212 42.9
Potri.004G023000 Populus trichocarpa HOM05D004361 ORTHO05D004706 1.9e-28 130.2 212 47.2
Peaxi162Scf00082g00177 Petunia axillaris HOM05D004361 ORTHO05D004706 7.2e-28 128.3 168 48.8
Gohir.D10G015500 Gossypium hirsutum HOM05D004361 ORTHO05D004706 2.1e-27 126.7 211 43.1
Gorai.011G017100 Gossypium raimondii HOM05D004361 ORTHO05D004706 2.1e-27 126.7 211 43.1
DCAR_008122 Daucus carota HOM05D004361 ORTHO05D004706 2.7e-27 126.3 141 55.3
Sabra11G0017100 Salix brachista HOM05D004361 ORTHO05D004706 1.0e-26 124.4 145 55.2
ClCG03G005000 Citrullus lanatus HOM05D004361 ORTHO05D004706 3.0e-26 122.9 205 44.4
Sopen10g001370 Solanum pennellii HOM05D004361 ORTHO05D004706 6.8e-26 121.7 173 52.0
Lj1g0002529 Lotus japonicus HOM05D004361 ORTHO05D004706 4.4e-25 119.0 164 45.7
Sed0010653 Sechium edule HOM05D004361 ORTHO05D004706 4.4e-25 119.0 186 43.5
ECA248G1765 Erigeron canadensis HOM05D004361 ORTHO05D004706 5.7e-25 118.6 195 47.2
SGA_v2.0_scaffold114G32021 Striga asiatica HOM05D004361 ORTHO05D004706 5.7e-25 118.6 213 46.0
Medtr5g005560 Medicago truncatula HOM05D004361 ORTHO05D004706 1.3e-24 117.5 218 41.3
Aqoxy4G01997 Aquilegia oxysepala HOM05D004361 ORTHO05D004706 1.7e-24 117.1 213 42.3
Gohir.A10G015500 Gossypium hirsutum HOM05D004361 ORTHO05D004706 1.1e-23 114.4 213 43.2
arahy.Tifrunner.gnm1.ann1.Y6FWJK Arachis hypogaea HOM05D004361 ORTHO05D004706 1.4e-23 114.0 138 50.0
Psat4g215200 Pisum sativum HOM05D004361 ORTHO05D004706 1.4e-23 114.0 209 40.7
Sed0011498 Sechium edule HOM05D004361 ORTHO05D004706 2.4e-23 113.2 215 40.9
Hund21376 Selenicereus undatus HOM05D004361 ORTHO05D004706 2.4e-23 113.2 198 44.9
VMungo1215G1007 Vigna mungo HOM05D004361 ORTHO05D004706 2.4e-23 113.2 207 41.5
Ciclev10016643m.g Citrus clementina HOM05D004361 ORTHO05D004706 3.1e-23 112.8 180 46.1
Ah.14g088180 Amaranthus hybridus HOM05D004361 ORTHO05D004706 5.4e-23 112.1 194 44.8
arahy.Tifrunner.gnm1.ann1.QUZ1HU Arachis hypogaea HOM05D004361 ORTHO05D004706 7.0e-23 111.7 138 48.6
AUR62022017 Chenopodium quinoa HOM05D004361 ORTHO05D004706 1.2e-22 110.9 212 42.9
MELO3C002485.2 Cucumis melo HOM05D004361 ORTHO05D004706 2.0e-22 110.2 210 42.4
Sc17g0007070 Simmondsia chinensis HOM05D004361 ORTHO05D004706 2.7e-22 109.8 189 42.9
CsaV3_1G011080 Cucumis sativus L. HOM05D004361 ORTHO05D004706 3.5e-22 109.4 207 42.0
Oeu051227.1 Olea europaea HOM05D004361 ORTHO05D004706 5.9e-22 108.6 145 45.5
HanXRQChr16g0516371 Helianthus annuus HOM05D004361 ORTHO05D004706 1.7e-21 107.1 175 44.0
DCAR_004190 Daucus carota HOM05D004361 ORTHO05D004706 5.0e-21 105.5 139 54.7
Lalb_Chr16g0376351 Lupinus albus HOM05D004361 ORTHO05D004706 1.1e-20 104.4 207 42.0
Thhalv10026295m.g Eutrema salsugineum HOM05D004361 ORTHO05D004706 1.5e-20 104.0 181 45.3
TPR.G5469 Trifolium pratense HOM05D004361 ORTHO05D004706 2.5e-20 103.2 184 39.1
CARHR227810 Cardamine hirsuta HOM05D004361 ORTHO05D004706 7.2e-20 101.7 183 41.5
TPR.G8297 Trifolium pratense HOM05D004361 ORTHO05D004706 7.2e-20 101.7 200 40.0
Sp7g19310 Schrenkiella parvula HOM05D004361 ORTHO05D004706 3.6e-19 99.4 185 42.2
HanXRQChr11g0339041 Helianthus annuus HOM05D004361 ORTHO05D004706 6.1e-19 98.6 188 41.0
BcaNung03832 Brassica carinata HOM05D004361 ORTHO05D004706 1.0e-18 97.8 188 41.5
AL7G32890 Arabidopsis lyrata HOM05D004361 ORTHO05D004706 3.0e-18 96.3 191 41.4
Carub.0007s2020 Capsella rubella HOM05D004361 ORTHO05D004706 3.0e-18 96.3 206 41.7
A08p15200 Brassica napus HOM05D004361 ORTHO05D004706 5.2e-18 95.5 196 41.8
HanXRQChr01g0002531 Helianthus annuus HOM05D004361 ORTHO05D004706 6.8e-18 95.1 187 40.1
BcaC09g51243 Brassica carinata HOM05D004361 ORTHO05D004706 1.5e-17 94.0 180 42.2
A01p12590 Brassica napus HOM05D004361 ORTHO05D004706 2.6e-17 93.2 179 41.3
C03p83440 Brassica napus HOM05D004361 ORTHO05D004706 2.6e-17 93.2 181 44.2
BolC3t20622H Brassica oleracea HOM05D004361 ORTHO05D004706 2.6e-17 93.2 179 43.6
BraA01t01202Z Brassica rapa HOM05D004361 ORTHO05D004706 2.6e-17 93.2 179 41.3
BolC1t01465H Brassica oleracea HOM05D004361 ORTHO05D004706 3.4e-17 92.8 179 41.3
AT4G21215 Arabidopsis thaliana HOM05D004361 ORTHO05D004706 7.5e-17 91.7 191 40.3
EL10Ac8g19901 Beta vulgaris HOM05D004361 ORTHO05D004706 7.5e-17 91.7 180 43.3
THA.LOC104812510 Tarenaya hassleriana HOM05D004361 ORTHO05D004706 1.7e-16 90.5 188 35.6
C07p51140 Brassica napus HOM05D004361 ORTHO05D004706 2.2e-16 90.1 180 42.2
Atru.chr10.2143 Acer truncatum HOM05D004361 ORTHO05D004706 2.8e-16 89.7 225 36.0
BraA08t33498Z Brassica rapa HOM05D004361 ORTHO05D004706 4.9e-16 89.0 195 41.5
BcaNung00863 Brassica carinata HOM05D004361 ORTHO05D004706 6.3e-16 88.6 178 42.1
BolC7t45614H Brassica oleracea HOM05D004361 ORTHO05D004706 6.3e-16 88.6 178 42.1
A03p52710 Brassica napus HOM05D004361 ORTHO05D004706 1.4e-15 87.4 178 41.0
SGA_v2.0_scaffold7G03885 Striga asiatica HOM05D004361 ORTHO05D004706 2.4e-15 86.7 189 42.3
THA.LOC104806260 Tarenaya hassleriana HOM05D004361 ORTHO05D004706 2.4e-15 86.7 165 36.4
Ah.09g235360 Amaranthus hybridus HOM05D004361 ORTHO05D004706 3.1e-15 86.3 180 40.0
BraA03t14345Z Brassica rapa HOM05D004361 ORTHO05D004706 5.4e-15 85.5 178 41.0
Lj2E274T2 Lonicera japonica HOM05D004361 ORTHO05D004706 9.2e-15 84.7 125 48.8
BcaC06g30659 Brassica carinata HOM05D004361 ORTHO05D004706 1.6e-14 84.0 171 42.1
SalBow1G7297 Salvia bowleyana HOM05D004361 ORTHO05D004706 2.0e-14 83.6 102 46.1
MBI02_g10098_MAGBIO Magnolia biondii HOM05D004361 ORTHO05D004706 3.5e-14 82.8 198 35.9
Phvul.008G132100 Phaseolus vulgaris HOM05D004361 ORTHO05D004706 1.9e-12 77.0 81 49.4
Aa31LG6G3240 Aethionema arabicum HOM05D004361 ORTHO05D004706 2.5e-12 76.6 169 37.9
Oeu030986.1 Olea europaea HOM05D004361 ORTHO05D004706 2.5e-12 76.6 58 65.5
CsaV3_6G049270 Cucumis sativus L. HOM05D004361 ORTHO05D004706 7.3e-12 75.1 179 38.5
arahy.Tifrunner.gnm1.ann1.SFZ90Y Arachis hypogaea HOM05D004361 ORTHO05D004706 1.6e-11 73.9 117 43.6
PSO675G1253 Papaver somniferum HOM05D004361 ORTHO05D004706 3.6e-11 72.8 208 34.1
BcaC01g00706 Brassica carinata HOM05D004361 ORTHO05D004706 2.3e-10 70.1 162 39.5
C01p15160 Brassica napus HOM05D004361 ORTHO05D004706 4.0e-10 69.3 162 37.0
BcaB03g11696 Brassica carinata HOM05D004361 ORTHO05D004706 5.2e-10 68.9 163 38.0
Lsat_1_v5_gn_1_123061 Lactuca sativa HOM05D004361 ORTHO05D004706 7.5e-09 65.1 39 82.1
MBI18_g06808_MAGBIO Magnolia biondii HOM05D004361 ORTHO05D004706 7.5e-09 65.1 202 36.6
ATR0762G059 Amborella trichopoda HOM05D009517 ORTHO05D011612 9.8e-09 64.7 207 35.3
CDE05G3057 Ceratophyllum demersum HOM05D067338 ORTHO05D004706 3.7e-08 62.8 189 33.9
Nn1g03641 Nelumbo nucifera HOM05D004361 ORTHO05D004706 3.7e-08 62.8 227 31.3
MELO3C032917.2 Cucumis melo HOM05D004361 ORTHO05D004706 2.7e-06 56.6 165 33.3
HPP92_001786 Vanilla planifolia HOM05D033938 ORTHO05D004706 7.8e-06 55.1 49 61.2


User provided reference genes

Program Settings