Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0034401 Camellia sinensis var. sinensis HOM05D008046 ORTHO05D004477 1.7e-77 292.7 166 100.0
CSS0039341 Camellia sinensis var. sinensis HOM05D008046 ORTHO05D004477 1.5e-76 289.7 166 97.6
CSS0043643 Camellia sinensis var. sinensis HOM05D008046 ORTHO05D004477 2.2e-32 142.9 156 66.0
CSS0015684 Camellia sinensis var. sinensis HOM05D008046 ORTHO05D004477 5.7e-28 128.3 165 60.6
CSS0046665 Camellia sinensis var. sinensis HOM05D008046 ORTHO05D004477 8.2e-27 124.4 170 55.3
CSS0041686 Camellia sinensis var. sinensis HOM05D008046 ORTHO05D004477 2.4e-26 122.9 170 54.7
Hma1.2p1_1148F.1_g261600 Hydrangea macrophylla HOM05D008046 ORTHO05D004477 3.2e-23 112.5 162 51.2
GSVIVG01009081001 Vitis vinifera HOM05D008046 ORTHO05D004477 3.5e-22 109.0 172 53.5
Potri.005G161700 Populus trichocarpa HOM05D008046 ORTHO05D004477 6.7e-21 104.8 152 55.3
Potri.002G100500 Populus trichocarpa HOM05D008046 ORTHO05D004477 1.1e-20 104.0 154 50.0
Cc10_g06700 Coffea canephora HOM05D008046 ORTHO05D004477 1.5e-20 103.6 179 48.6
TAR628G0226 Trochodendron aralioides HOM05D008046 ORTHO05D004477 6.3e-19 98.2 140 55.7
TWI12G0518 Tripterygium wilfordii HOM05D008046 ORTHO05D004477 5.3e-18 95.1 173 44.5
TAR625G0942 Trochodendron aralioides HOM05D008046 ORTHO05D004477 1.2e-17 94.0 147 46.3
Thecc.08G102400 Theobroma cacao HOM05D008046 ORTHO05D004477 1.5e-17 93.6 159 49.7
QL02p002440 Quercus lobata HOM05D008046 ORTHO05D004477 4.5e-17 92.0 151 50.3
Haze_18268 Corylus avellana HOM05D008046 ORTHO05D004477 5.9e-17 91.7 162 48.1
Haze_18269 Corylus avellana HOM05D008046 ORTHO05D004477 5.9e-17 91.7 162 48.1
Sabra02G0078700 Salix brachista HOM05D008046 ORTHO05D004477 1.0e-16 90.9 152 48.7
Duzib116G0877 Durio zibethinus HOM05D008046 ORTHO05D004477 1.7e-16 90.1 182 41.8
Nn5g30002 Nelumbo nucifera HOM05D008176 ORTHO05D004477 2.9e-16 89.4 149 45.0
COL.COLO4_12009 Corchorus olitorius HOM05D008046 ORTHO05D004477 2.5e-15 86.3 164 47.0
Ciclev10002675m.g Citrus clementina HOM05D008046 ORTHO05D004477 3.2e-15 85.9 155 49.0
Manes.02G149300 Manihot esculenta HOM05D008046 ORTHO05D004477 3.2e-15 85.9 153 50.3
Oeu048965.1 Olea europaea HOM05D008046 ORTHO05D004477 7.2e-15 84.7 164 43.9
TAR381G0533 Trochodendron aralioides HOM05D008046 ORTHO05D004477 2.7e-14 82.8 162 40.7
Duzib041G0197 Durio zibethinus HOM05D008046 ORTHO05D004477 6.1e-14 81.6 162 47.5
Thecc.01G095600 Theobroma cacao HOM05D008176 ORTHO05D004477 1.0e-13 80.9 160 38.1
Gohir.A05G265833 Gossypium hirsutum HOM05D008046 ORTHO05D004477 8.8e-13 77.8 140 39.3
CiPaw.15G046100 Carya illinoinensis HOM05D008046 ORTHO05D004477 1.5e-12 77.0 149 51.0
CiPaw.16G033000 Carya illinoinensis HOM05D008046 ORTHO05D004477 2.0e-12 76.6 165 45.5
DCAR_019289 Daucus carota HOM05D008046 ORTHO05D004477 3.3e-12 75.9 171 45.0
CiPaw.03G145800 Carya illinoinensis HOM05D008176 ORTHO05D004477 5.7e-12 75.1 130 38.5
TWI36G0888 Tripterygium wilfordii HOM05D008046 ORTHO05D004477 5.7e-12 75.1 159 40.9
Duzib264G0386 Durio zibethinus HOM05D008176 ORTHO05D004477 7.4e-12 74.7 156 37.2
Manes.12G129900 Manihot esculenta HOM05D008176 ORTHO05D004477 7.4e-12 74.7 144 41.7
Potri.005G072000 Populus trichocarpa HOM05D008176 ORTHO05D004477 7.4e-12 74.7 129 34.9
Lsat_1_v5_gn_6_104300 Lactuca sativa HOM05D008046 ORTHO05D004477 9.7e-12 74.3 140 50.0
PGR031G3049 Punica granatum HOM05D008046 ORTHO05D004477 9.7e-12 74.3 173 37.6
Sc26g0000200 Simmondsia chinensis HOM05D013332 ORTHO05D004477 9.7e-12 74.3 133 36.8
CiPaw.04G103600 Carya illinoinensis HOM05D008176 ORTHO05D004477 1.7e-11 73.6 147 38.8
Ca_08988_v3 Cicer arietinum L. HOM05D008176 ORTHO05D004477 1.7e-11 73.6 142 38.7
Gohir.D05G267950 Gossypium hirsutum HOM05D008046 ORTHO05D004477 2.2e-11 73.2 142 38.0
Nn1g05455 Nelumbo nucifera HOM05D008046 ORTHO05D004477 2.2e-11 73.2 137 46.7
Gorai.009G280100 Gossypium raimondii HOM05D008046 ORTHO05D004477 2.8e-11 72.8 144 37.5
Nitab4.5_0000128g0240 Nicotiana tabacum HOM05D008176 ORTHO05D004477 2.8e-11 72.8 143 40.6
Gorai.005G094600 Gossypium raimondii HOM05D008046 ORTHO05D004477 3.7e-11 72.4 139 49.6
COL.COLO4_27295 Corchorus olitorius HOM05D008176 ORTHO05D004477 4.8e-11 72.0 158 38.0
Manes.18G064000 Manihot esculenta HOM05D008046 ORTHO05D004477 4.8e-11 72.0 110 50.9
QL06p048130 Quercus lobata HOM05D008176 ORTHO05D004477 4.8e-11 72.0 124 43.5
Dinv13234 Davidia involucrata HOM05D008176 ORTHO05D004477 6.3e-11 71.6 123 42.3
Duzib093G0605 Durio zibethinus HOM05D008046 ORTHO05D004477 6.3e-11 71.6 144 46.5
Haze_24851 Corylus avellana HOM05D008176 ORTHO05D004477 1.1e-10 70.9 134 53.7
Gohir.A02G076800 Gossypium hirsutum HOM05D008046 ORTHO05D004477 1.1e-10 70.9 139 48.9
Medtr5g064640 Medicago truncatula HOM05D008046 ORTHO05D004477 1.1e-10 70.9 150 39.3
Nitab4.5_0012818g0010 Nicotiana tabacum HOM05D008176 ORTHO05D004477 1.1e-10 70.9 142 40.1
Lalb_Chr10g0102531 Lupinus albus HOM05D008046 ORTHO05D004477 1.4e-10 70.5 162 38.9
Gohir.A01G132600 Gossypium hirsutum HOM05D008046 ORTHO05D004477 1.8e-10 70.1 144 36.8
Sc23g0000380 Simmondsia chinensis HOM05D008046 ORTHO05D004477 1.8e-10 70.1 156 34.0
Eucgr.B00040 Eucalyptus grandis HOM05D008046 ORTHO05D004477 2.4e-10 69.7 174 35.6
Prupe.1G522800 Prunus persica HOM05D018381 ORTHO05D004477 3.1e-10 69.3 160 45.0
Sabra07G0080300 Salix brachista HOM05D008176 ORTHO05D004477 3.1e-10 69.3 126 36.5
CDE05G1898 Ceratophyllum demersum HOM05D000157 ORTHO05D000691 4.1e-10 68.9 138 34.8
Gohir.A02G129700 Gossypium hirsutum HOM05D008176 ORTHO05D004477 4.1e-10 68.9 149 38.9
Gohir.D02G084000 Gossypium hirsutum HOM05D008046 ORTHO05D004477 4.1e-10 68.9 137 48.9
Atru.chr3.1344 Acer truncatum HOM05D008176 ORTHO05D004477 5.3e-10 68.6 141 41.1
Gorai.007G059700 Gossypium raimondii HOM05D008176 ORTHO05D004477 6.9e-10 68.2 157 40.8
Peaxi162Scf00237g00201 Petunia axillaris HOM05D008176 ORTHO05D004477 6.9e-10 68.2 146 35.6
Aqoxy6G00716 Aquilegia oxysepala HOM05D008046 ORTHO05D004477 9.1e-10 67.8 163 34.4
Duzib187G0825 Durio zibethinus HOM05D008176 ORTHO05D004477 9.1e-10 67.8 147 38.1
Gorai.002G141100 Gossypium raimondii HOM05D008046 ORTHO05D004477 9.1e-10 67.8 144 43.1
PGSC0003DMG400016792 Solanum tuberosum HOM05D008176 ORTHO05D004477 9.1e-10 67.8 130 51.5
TPR.G24247 Trifolium pratense HOM05D008046 ORTHO05D004477 9.1e-10 67.8 151 42.4
PGSC0003DMG400016149 Solanum tuberosum HOM05D008176 ORTHO05D004477 1.2e-09 67.4 142 35.2
Solyc11g010250.1 Solanum lycopersicum HOM05D008176 ORTHO05D004477 1.5e-09 67.0 142 34.5
Gohir.D03G040500 Gossypium hirsutum HOM05D008176 ORTHO05D004477 2.0e-09 66.6 159 36.5
Gorai.003G041400 Gossypium raimondii HOM05D008176 ORTHO05D004477 2.0e-09 66.6 149 37.6
Medtr3g099490 Medicago truncatula HOM05D008046 ORTHO05D004477 2.0e-09 66.6 134 48.5
Sopen11g005030 Solanum pennellii HOM05D008176 ORTHO05D004477 2.0e-09 66.6 141 34.8
Gohir.A11G051100 Gossypium hirsutum HOM05D008176 ORTHO05D004477 4.5e-09 65.5 155 36.1
Lj1g0004298 Lotus japonicus HOM05D008046 ORTHO05D004477 4.5e-09 65.5 157 40.8
Cfa002600 Carpinus fangiana HOM05D008176 ORTHO05D004477 1.0e-08 64.3 125 50.4
Lsat_1_v5_gn_1_3180 Lactuca sativa HOM05D008046 ORTHO05D004477 1.0e-08 64.3 130 46.2
SalBow5G1479 Salvia bowleyana HOM05D008046 ORTHO05D004477 1.0e-08 64.3 165 38.2
Glyma.04G099200 Glycine max HOM05D008046 ORTHO05D004477 1.3e-08 63.9 147 46.3
Solyc04g074680.1 Solanum lycopersicum HOM05D010872 ORTHO05D004477 1.3e-08 63.9 163 32.5
Gohir.D11G054500 Gossypium hirsutum HOM05D008176 ORTHO05D004477 1.7e-08 63.5 159 40.3
Sopen05g029890 Solanum pennellii HOM05D008176 ORTHO05D004477 1.7e-08 63.5 130 40.0
Migut.K01109 Erythranthe guttata HOM05D008046 ORTHO05D004477 2.9e-08 62.8 142 40.8
Cpa.g.sc36.179 Carica papaya HOM05D008046 ORTHO05D004477 3.8e-08 62.4 141 48.9
Phvul.001G253900 Phaseolus vulgaris HOM05D008176 ORTHO05D004477 3.8e-08 62.4 129 37.2
Glyma.06G100900 Glycine max HOM05D008046 ORTHO05D004477 5.0e-08 62.0 146 43.2
VMungo1383G1959 Vigna mungo HOM05D008176 ORTHO05D004477 5.0e-08 62.0 124 37.1
Glyma.14G177400 Glycine max HOM05D008046 ORTHO05D004477 6.5e-08 61.6 39 74.4
Glyma.11G242100 Glycine max HOM05D008176 ORTHO05D004477 8.5e-08 61.2 124 37.1
Manes.13G096700 Manihot esculenta HOM05D008176 ORTHO05D004477 8.5e-08 61.2 139 35.3
Glyma.18G015000 Glycine max HOM05D008176 ORTHO05D004477 1.1e-07 60.8 124 36.3
Phvul.009G032900 Phaseolus vulgaris HOM05D008046 ORTHO05D004477 1.1e-07 60.8 167 41.3
SGA_v2.0_scaffold45G17135 Striga asiatica HOM05D010872 ORTHO05D004477 1.1e-07 60.8 170 30.6
THA.LOC104800226 Tarenaya hassleriana HOM05D009138 ORTHO05D011294 1.1e-07 60.8 101 41.6
TPR.G16006 Trifolium pratense HOM05D008176 ORTHO05D004477 1.9e-07 60.1 141 34.8
unitig_32.g11784 Utricularia gibba HOM05D008046 ORTHO05D004477 1.9e-07 60.1 143 41.3
MSTRG.3689 Avicennia marina HOM05D008046 ORTHO05D004477 2.5e-07 59.7 184 34.8
Glyma.02G209200 Glycine max HOM05D008046 ORTHO05D004477 2.5e-07 59.7 154 43.5
Potri.007G097000 Populus trichocarpa HOM05D008176 ORTHO05D004477 2.5e-07 59.7 125 33.6
Sopen05g029880 Solanum pennellii HOM05D008176 ORTHO05D004477 2.5e-07 59.7 121 43.0
THA.LOC104816630 Tarenaya hassleriana HOM05D010872 ORTHO05D013672 2.5e-07 59.7 141 44.7
Ciclev10026640m.g Citrus clementina HOM05D008176 ORTHO05D004477 3.2e-07 59.3 160 41.2
TWI53G0271 Tripterygium wilfordii HOM05D008176 ORTHO05D004477 5.5e-07 58.5 152 36.2
Lj4g0008028 Lotus japonicus HOM05D008176 ORTHO05D004477 7.2e-07 58.2 137 34.3
Medtr3g086830 Medicago truncatula HOM05D008176 ORTHO05D004477 7.2e-07 58.2 140 36.4
RcHm_v2.0_Chr7g0242321 Rosa chinensis HOM05D018381 ORTHO05D004477 7.2e-07 58.2 181 40.9
VMungo0647G1155 Vigna mungo HOM05D008046 ORTHO05D004477 7.2e-07 58.2 153 41.2
Medtr8g089920 Medicago truncatula HOM05D008176 ORTHO05D004477 1.2e-06 57.4 148 33.8
THA.LOC104809723 Tarenaya hassleriana HOM05D009138 ORTHO05D011294 1.2e-06 57.4 88 52.3
Phvul.008G176900 Phaseolus vulgaris HOM05D008046 ORTHO05D004477 1.6e-06 57.0 46 63.0
Aa31LG6G8650 Aethionema arabicum HOM05D010872 ORTHO05D013672 2.1e-06 56.6 50 54.0
Psat7g056440 Pisum sativum HOM05D008176 ORTHO05D004477 2.1e-06 56.6 134 32.8
Sabra05G0058900 Salix brachista HOM05D008176 ORTHO05D004477 2.1e-06 56.6 131 42.7
PGSC0003DMG400017769 Solanum tuberosum HOM05D059644 ORTHO05D004477 2.1e-06 56.6 140 41.4
BcaB03g13666 Brassica carinata HOM05D010872 ORTHO05D013672 2.7e-06 56.2 138 34.1
Ca_16509_v3 Cicer arietinum L. HOM05D008176 ORTHO05D004477 2.7e-06 56.2 140 34.3
FAN23G0907 Fragaria x ananassa HOM05D013332 ORTHO05D004477 2.7e-06 56.2 165 34.5
Hma1.2p1_0019F.1_g013800 Hydrangea macrophylla HOM05D013332 ORTHO05D004477 2.7e-06 56.2 154 39.6
Lalb_Chr23g0270371 Lupinus albus HOM05D008046 ORTHO05D004477 2.7e-06 56.2 138 41.3
RcHm_v2.0_Chr2g0112381 Rosa chinensis HOM05D013332 ORTHO05D004477 2.7e-06 56.2 148 35.8
PGSC0003DMG400016791 Solanum tuberosum HOM05D008176 ORTHO05D004477 2.7e-06 56.2 121 40.5
EL10Ac1g01145 Beta vulgaris HOM05D008046 ORTHO05D004477 3.6e-06 55.8 158 32.9
Sopen04g029650 Solanum pennellii HOM05D010872 ORTHO05D013672 3.6e-06 55.8 42 59.5
SalBow3G2508 Salvia bowleyana HOM05D029310 ORTHO05D004477 4.7e-06 55.5 132 34.8
SalBow3G3284 Salvia bowleyana HOM05D029310 ORTHO05D004477 4.7e-06 55.5 132 34.8
BcaC05g27742 Brassica carinata HOM05D010872 ORTHO05D013672 6.1e-06 55.1 121 35.5
A05p23830 Brassica napus HOM05D010872 ORTHO05D013672 6.1e-06 55.1 65 47.7
C05p37280 Brassica napus HOM05D010872 ORTHO05D013672 6.1e-06 55.1 121 35.5
BraA05t21254Z Brassica rapa HOM05D010872 ORTHO05D013672 6.1e-06 55.1 65 47.7
Migut.H02240 Erythranthe guttata HOM05D008046 ORTHO05D004477 6.1e-06 55.1 132 42.4
Sed0003502 Sechium edule HOM05D010872 ORTHO05D013672 6.1e-06 55.1 134 34.3
AT1G35210 Arabidopsis thaliana HOM05D010872 ORTHO05D013672 7.9e-06 54.7 43 58.1
BolC5t32474H Brassica oleracea HOM05D010872 ORTHO05D013672 7.9e-06 54.7 121 35.5
Psat0s5249g0040 Pisum sativum HOM05D008046 ORTHO05D004477 7.9e-06 54.7 124 46.8


User provided reference genes

Program Settings