Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0034391 Camellia sinensis var. sinensis HOM05D004191 ORTHO05D004887 1.1e-101 373.2 187 100.0
CSS0028201 Camellia sinensis var. sinensis HOM05D004191 ORTHO05D004887 4.8e-100 367.9 187 97.9
FvH4_3g21920 Fragaria vesca HOM05D004191 ORTHO05D004887 9.0e-99 363.6 187 94.1
FAN16G1028 Fragaria x ananassa HOM05D004191 ORTHO05D004887 9.0e-99 363.6 187 94.1
RcHm_v2.0_Chr5g0037731 Rosa chinensis HOM05D004191 ORTHO05D004887 9.0e-99 363.6 187 94.1
MD03G1210500 Malus domestica HOM05D004191 ORTHO05D004887 1.5e-98 362.8 187 94.7
FAN21G0017 Fragaria x ananassa HOM05D004191 ORTHO05D004887 2.0e-98 362.5 187 93.6
QL08p013180 Quercus lobata HOM05D004191 ORTHO05D004887 2.0e-98 362.5 186 94.6
Thecc.05G140700 Theobroma cacao HOM05D004191 ORTHO05D004887 2.0e-98 362.5 187 94.7
FAN25G1832 Fragaria x ananassa HOM05D004191 ORTHO05D004887 2.6e-98 362.1 187 93.0
Prupe.4G204700 Prunus persica HOM05D004191 ORTHO05D004887 2.6e-98 362.1 187 93.6
CiPaw.12G126500 Carya illinoinensis HOM05D004191 ORTHO05D004887 3.4e-98 361.7 187 94.1
Duzib093G1201 Durio zibethinus HOM05D004191 ORTHO05D004887 3.4e-98 361.7 187 94.7
CiPaw.11G184500 Carya illinoinensis HOM05D004191 ORTHO05D004887 4.5e-98 361.3 187 94.1
Lj1A865T18 Lonicera japonica HOM05D004191 ORTHO05D004887 4.5e-98 361.3 187 93.6
MD11G1225200 Malus domestica HOM05D004191 ORTHO05D004887 4.5e-98 361.3 187 94.1
GSVIVG01002004001 Vitis vinifera HOM05D004191 ORTHO05D004887 7.6e-98 360.5 187 94.7
Lalb_Chr19g0134771 Lupinus albus HOM05D004191 ORTHO05D004887 1.0e-97 360.1 187 94.1
Nitab4.5_0002838g0150 Nicotiana tabacum HOM05D004191 ORTHO05D004887 1.7e-97 359.4 187 95.2
Potri.001G418400 Populus trichocarpa HOM05D004191 ORTHO05D004887 1.7e-97 359.4 187 93.6
ECA236G4841 Erigeron canadensis HOM05D004191 ORTHO05D004887 2.2e-97 359.0 187 93.0
Nitab4.5_0005420g0050 Nicotiana tabacum HOM05D004191 ORTHO05D004887 2.2e-97 359.0 187 94.7
Sabra16G0284100 Salix brachista HOM05D004191 ORTHO05D004887 2.2e-97 359.0 187 93.0
Dinv40713 Davidia involucrata HOM05D004191 ORTHO05D004887 2.9e-97 358.6 187 95.7
Duzib106G0849 Durio zibethinus HOM05D004191 ORTHO05D004887 2.9e-97 358.6 187 93.6
HanXRQChr02g0054141 Helianthus annuus HOM05D004191 ORTHO05D004887 2.9e-97 358.6 187 93.6
Lj3g0027602 Lotus japonicus HOM05D004191 ORTHO05D004887 2.9e-97 358.6 187 92.5
CANSAT80G0944 Cannabis sativa HOM05D004191 ORTHO05D004887 3.8e-97 358.2 187 93.0
MBI02_g10101_MAGBIO Magnolia biondii HOM05D004191 ORTHO05D004887 3.8e-97 358.2 187 94.1
Manes.03G123300 Manihot esculenta HOM05D004191 ORTHO05D004887 3.8e-97 358.2 187 93.6
Actinidia34670 Actinidia chinensis HOM05D004191 ORTHO05D004887 4.9e-97 357.8 187 95.2
COL.COLO4_05062 Corchorus olitorius HOM05D004191 ORTHO05D004887 4.9e-97 357.8 187 93.0
TAR371G0103 Trochodendron aralioides HOM05D004191 ORTHO05D004887 4.9e-97 357.8 187 94.1
Ciclev10009626m.g Citrus clementina HOM05D004191 ORTHO05D004887 6.5e-97 357.5 187 93.0
Lsat_1_v5_gn_7_108481 Lactuca sativa HOM05D004191 ORTHO05D004887 6.5e-97 357.5 187 93.0
arahy.Tifrunner.gnm1.ann1.HY89VY Arachis hypogaea HOM05D004191 ORTHO05D004887 8.4e-97 357.1 187 92.5
Ca_18852_v3 Cicer arietinum L. HOM05D004191 ORTHO05D004887 8.4e-97 357.1 187 93.0
Gohir.A09G118400 Gossypium hirsutum HOM05D004191 ORTHO05D004887 8.4e-97 357.1 187 93.0
Gohir.D09G115300 Gossypium hirsutum HOM05D004191 ORTHO05D004887 8.4e-97 357.1 187 93.0
Gorai.006G132900 Gossypium raimondii HOM05D004191 ORTHO05D004887 8.4e-97 357.1 187 93.0
PGSC0003DMG400005405 Solanum tuberosum HOM05D004191 ORTHO05D004887 1.1e-96 356.7 187 93.6
Cpa.g.sc97.62 Carica papaya HOM05D004191 ORTHO05D004887 1.4e-96 356.3 187 92.0
Cc05_g13280 Coffea canephora HOM05D004191 ORTHO05D004887 1.4e-96 356.3 187 93.0
arahy.Tifrunner.gnm1.ann1.B9KZG1 Arachis hypogaea HOM05D004191 ORTHO05D004887 1.9e-96 355.9 187 92.5
ATR0609G026 Amborella trichopoda HOM05D004191 ORTHO05D004887 2.5e-96 355.5 187 93.0
Lalb_Chr03g0030141 Lupinus albus HOM05D004191 ORTHO05D004887 3.2e-96 355.1 187 92.0
Oeu032442.1 Olea europaea HOM05D004191 ORTHO05D004887 4.2e-96 354.8 187 93.0
Peaxi162Scf00082g00016 Petunia axillaris HOM05D004191 ORTHO05D004887 4.2e-96 354.8 187 93.6
FAN11G1314 Fragaria x ananassa HOM05D004191 ORTHO05D004887 5.5e-96 354.4 200 88.0
Solyc10g006490.3 Solanum lycopersicum HOM05D004191 ORTHO05D004887 5.5e-96 354.4 187 93.6
TAR626G0300 Trochodendron aralioides HOM05D004191 ORTHO05D004887 5.5e-96 354.4 187 92.5
PSO675G8300 Papaver somniferum HOM05D004191 ORTHO05D004887 7.1e-96 354.0 187 92.0
PGR031G0276 Punica granatum HOM05D004191 ORTHO05D004887 7.1e-96 354.0 184 94.0
Aqoxy4G00334 Aquilegia oxysepala HOM05D004191 ORTHO05D004887 1.2e-95 353.2 187 92.0
Phvul.011G139700 Phaseolus vulgaris HOM05D004191 ORTHO05D004887 1.2e-95 353.2 187 92.5
Rhsim12G0150700 Rhododendron simsii HOM05D004191 ORTHO05D004887 1.2e-95 353.2 187 92.0
Eucgr.F03430 Eucalyptus grandis HOM05D004191 ORTHO05D004887 1.6e-95 352.8 182 94.5
vmacro16476 Vaccinium macrocarpon HOM05D004191 ORTHO05D004887 1.6e-95 352.8 187 92.0
Solyc01g096530.3 Solanum lycopersicum HOM05D004191 ORTHO05D004887 2.1e-95 352.4 187 92.5
VMungo1127G0852 Vigna mungo HOM05D004191 ORTHO05D004887 2.7e-95 352.1 187 91.4
CAN.G134.12 Capsicum annuum HOM05D004191 ORTHO05D004887 4.6e-95 351.3 187 92.0
THA.LOC104799884 Tarenaya hassleriana HOM05D004191 ORTHO05D004887 4.6e-95 351.3 187 90.9
Glyma.06G269400 Glycine max HOM05D004191 ORTHO05D004887 6.0e-95 350.9 187 91.4
Glyma.12G135200 Glycine max HOM05D004191 ORTHO05D004887 6.0e-95 350.9 187 91.4
Oeu007633.1 Olea europaea HOM05D004191 ORTHO05D004887 6.0e-95 350.9 196 89.8
Sopen01g040260 Solanum pennellii HOM05D004191 ORTHO05D004887 6.0e-95 350.9 187 92.5
SGA_v2.0_scaffold416G51230 Striga asiatica HOM05D004191 ORTHO05D004887 6.0e-95 350.9 187 90.4
AL8G30180 Arabidopsis lyrata HOM05D004191 ORTHO05D004887 1.0e-94 350.1 187 91.4
TPR.G25893 Trifolium pratense HOM05D004191 ORTHO05D004887 1.3e-94 349.7 187 91.4
SalBow7G2717 Salvia bowleyana HOM05D004191 ORTHO05D004887 2.3e-94 349.0 187 90.4
AT5G54750 Arabidopsis thaliana HOM05D004191 ORTHO05D004887 3.0e-94 348.6 187 90.4
Carub.0008s1502 Capsella rubella HOM05D004191 ORTHO05D004887 3.9e-94 348.2 187 90.4
PSO170G1932 Papaver somniferum HOM05D004191 ORTHO05D004887 3.9e-94 348.2 187 90.9
TWI39G0061 Tripterygium wilfordii HOM05D004191 ORTHO05D004887 3.9e-94 348.2 187 90.4
CARHR268090 Cardamine hirsuta HOM05D004191 ORTHO05D004887 5.1e-94 347.8 187 89.8
Hma1.2p1_0049F.1_g028640 Hydrangea macrophylla HOM05D004191 ORTHO05D004887 5.1e-94 347.8 185 92.4
ATR0109G002 Amborella trichopoda HOM05D004191 ORTHO05D004887 6.7e-94 347.4 187 91.4
Thhalv10019192m.g Eutrema salsugineum HOM05D004191 ORTHO05D004887 8.7e-94 347.1 187 89.8
HPP92_013205 Vanilla planifolia HOM05D001003 ORTHO05D004887 1.1e-93 346.7 186 90.3
SpUn0117_0020 Schrenkiella parvula HOM05D004191 ORTHO05D004887 1.5e-93 346.3 187 89.8
Aa31LG3G10650 Aethionema arabicum HOM05D004191 ORTHO05D004887 1.9e-93 345.9 187 89.3
Medtr4g081170 Medicago truncatula HOM05D004191 ORTHO05D004887 1.9e-93 345.9 187 90.9
Hund11592 Selenicereus undatus HOM05D004191 ORTHO05D004887 1.9e-93 345.9 187 89.8
MELO3C018102.2 Cucumis melo HOM05D004191 ORTHO05D004887 2.5e-93 345.5 187 89.8
CsaV3_3G023130 Cucumis sativus L. HOM05D004191 ORTHO05D004887 2.5e-93 345.5 187 89.8
Sed0000628 Sechium edule HOM05D004191 ORTHO05D004887 2.5e-93 345.5 187 89.8
BcaB07g31034 Brassica carinata HOM05D004191 ORTHO05D004887 3.3e-93 345.1 187 89.3
A09p20070 Brassica napus HOM05D004191 ORTHO05D004887 3.3e-93 345.1 187 89.3
C09p25460 Brassica napus HOM05D004191 ORTHO05D004887 3.3e-93 345.1 187 89.3
BraA09t37620Z Brassica rapa HOM05D004191 ORTHO05D004887 3.3e-93 345.1 187 89.3
CAN.G1110.10 Capsicum annuum HOM05D004191 ORTHO05D004887 4.3e-93 344.7 201 87.1
TPR.G24299 Trifolium pratense HOM05D004191 ORTHO05D004887 5.7e-93 344.4 186 90.9
MSTRG.6892 Avicennia marina HOM05D004191 ORTHO05D004887 7.4e-93 344.0 187 89.3
Sp4g10480 Schrenkiella parvula HOM05D004191 ORTHO05D004887 9.6e-93 343.6 187 88.8
Ah.02g116780 Amaranthus hybridus HOM05D004191 ORTHO05D004887 2.1e-92 342.4 187 88.8
Medtr8g027700 Medicago truncatula HOM05D004191 ORTHO05D004887 2.1e-92 342.4 187 89.3
Migut.H01854 Erythranthe guttata HOM05D004191 ORTHO05D004887 2.8e-92 342.0 187 88.2
Sopen10g002440 Solanum pennellii HOM05D004191 ORTHO05D004887 4.8e-92 341.3 206 84.5
Eucgr.F00980 Eucalyptus grandis HOM05D004191 ORTHO05D004887 6.2e-92 340.9 187 87.2
PGR083G1136 Punica granatum HOM05D004191 ORTHO05D004887 1.1e-91 340.1 193 87.0
SGA_v2.0_scaffold24G10288 Striga asiatica HOM05D004191 ORTHO05D004887 1.1e-91 340.1 187 88.2
MSTRG.12958 Avicennia marina HOM05D004191 ORTHO05D004887 1.4e-91 339.7 187 88.2
CDE02G0163 Ceratophyllum demersum HOM05D004191 ORTHO05D004887 1.4e-91 339.7 187 87.7
Sed0012224 Sechium edule HOM05D004191 ORTHO05D004887 1.8e-91 339.3 187 88.2
Migut.M01809 Erythranthe guttata HOM05D004191 ORTHO05D004887 3.1e-91 338.6 181 91.2
EL10Ac5g13057 Beta vulgaris HOM05D004191 ORTHO05D004887 4.1e-91 338.2 187 87.2
Sc22g0000820 Simmondsia chinensis HOM05D004191 ORTHO05D004887 4.1e-91 338.2 187 87.7
PSO782G4612 Papaver somniferum HOM05D004191 ORTHO05D004887 5.3e-91 337.8 203 83.7
Zm00001eb067130 Zea mays HOM05D004191 ORTHO05D004887 2.6e-90 335.5 185 86.5
Zm00001eb433090 Zea mays HOM05D004191 ORTHO05D004887 3.4e-90 335.1 185 85.9
TWI38G1569 Tripterygium wilfordii HOM05D004191 ORTHO05D004887 4.5e-90 334.7 208 82.7
BolC9t55449H Brassica oleracea HOM05D004191 ORTHO05D004887 7.6e-90 334.0 206 81.6
Sc15g0001730 Simmondsia chinensis HOM05D004191 ORTHO05D004887 1.0e-89 333.6 187 86.6
Os03g0402000 Oryza sativa ssp. japonica HOM05D004191 ORTHO05D004887 5.0e-89 331.3 182 86.8
Os07g0642300 Oryza sativa ssp. japonica HOM05D004191 ORTHO05D004887 5.0e-89 331.3 182 86.8
unitig_0.g2386 Utricularia gibba HOM05D004191 ORTHO05D004887 2.5e-88 328.9 183 88.5
arahy.Tifrunner.gnm1.ann1.T6DWBF Arachis hypogaea HOM05D004191 ORTHO05D004887 7.1e-88 327.4 187 84.5
Manes.15G076000 Manihot esculenta HOM05D004191 ORTHO05D004887 2.7e-87 325.5 186 83.9
ClCG05G014740 Citrullus lanatus HOM05D004191 ORTHO05D004887 1.0e-86 323.6 241 70.1
Lsat_1_v5_gn_5_5821 Lactuca sativa HOM05D004191 ORTHO05D004887 2.5e-85 318.9 173 89.0
Nn1g08677 Nelumbo nucifera HOM05D004191 ORTHO05D004887 5.7e-85 317.8 178 88.8
Hund24114 Selenicereus undatus HOM05D004191 ORTHO05D004887 7.4e-85 317.4 211 76.8
Eucgr.F00978 Eucalyptus grandis HOM05D004191 ORTHO05D004887 1.2e-82 310.1 169 88.2
Mapoly0006s0106 Marchantia polymorpha HOM05D004191 ORTHO05D004887 2.0e-82 309.3 185 80.0
SMO165G0074 Selaginella moellendorffii HOM05D004191 ORTHO05D004887 2.1e-79 299.3 187 76.5
AagrBONN_evm.TU.Sc2ySwM_344.5600 Anthoceros agrestis HOM05D004191 ORTHO05D004887 4.6e-79 298.1 187 75.9
AagrBONN_evm.TU.Sc2ySwM_344.5601 Anthoceros agrestis HOM05D004191 ORTHO05D004887 4.6e-79 298.1 187 75.9
Peaxi162Scf01434g00020 Petunia axillaris HOM05D004191 ORTHO05D004887 1.0e-78 297.0 187 81.8
Nitab4.5_0002342g0090 Nicotiana tabacum HOM05D004191 ORTHO05D004887 2.3e-78 295.8 187 80.7
AagrBONN_evm.TU.Sc2ySwM_362.1587 Anthoceros agrestis HOM05D004191 ORTHO05D004887 8.8e-78 293.9 187 74.9
Nitab4.5_0002229g0200 Nicotiana tabacum HOM05D004191 ORTHO05D004887 5.7e-77 291.2 187 80.2
CBR_g9060 Chara braunii HOM05D004191 ORTHO05D004887 9.7e-77 290.4 187 75.4
BcaB07g30600 Brassica carinata HOM05D004191 ORTHO05D004887 2.8e-76 288.9 186 79.6
BcaC04g21960 Brassica carinata HOM05D004191 ORTHO05D004887 8.2e-76 287.3 154 90.9
AagrBONN_evm.TU.Sc2ySwM_344.5599 Anthoceros agrestis HOM05D004191 ORTHO05D004887 2.4e-75 285.8 172 77.9
Hma1.2p1_0774F.1_g216345 Hydrangea macrophylla HOM05D004191 ORTHO05D004887 5.3e-75 284.6 158 89.2
Dinv22301 Davidia involucrata HOM05D004191 ORTHO05D004887 6.9e-75 284.3 149 95.3
arahy.Tifrunner.gnm1.ann1.N3PQ25 Arachis hypogaea HOM05D004191 ORTHO05D004887 5.0e-73 278.1 187 74.9
Pp3c6_29730 Physcomitrium patens HOM05D004191 ORTHO05D004887 5.0e-73 278.1 172 76.2
Peaxi162Scf01475g00001 Petunia axillaris HOM05D004191 ORTHO05D004887 6.5e-73 277.7 187 76.5
AUR62039960 Chenopodium quinoa HOM05D004191 ORTHO05D004887 2.0e-69 266.2 148 86.5
Cpa.g.sc2.173 Carica papaya HOM05D004191 ORTHO05D004887 6.3e-68 261.2 214 60.7
AUR62007507 Chenopodium quinoa HOM05D004191 ORTHO05D004887 2.2e-65 252.7 158 77.8
Peaxi162Scf08257g00003 Petunia axillaris HOM05D004191 ORTHO05D004887 2.9e-65 252.3 187 71.1
PGSC0003DMG400029125 Solanum tuberosum HOM05D004191 ORTHO05D004887 1.1e-61 240.4 187 67.9
Cre03.g145607 Chlamydomonas reinhardtii HOM05D004191 ORTHO05D004887 2.8e-60 235.7 185 60.0
Sp2g07630 Schrenkiella parvula HOM05D004191 ORTHO05D004887 3.5e-58 228.8 124 91.1
AagrBONN_evm.TU.Sc2ySwM_362.1580 Anthoceros agrestis HOM05D004191 ORTHO05D004887 9.8e-53 210.7 133 77.4
Cfa020410 Carpinus fangiana HOM05D004191 ORTHO05D004887 8.3e-52 207.6 103 94.2
PRCOL_00004686 Prasinoderma coloniale HOM05D004191 ORTHO05D004887 1.9e-48 196.4 167 55.7
COL.COLO4_37956 Corchorus olitorius HOM05D004191 ORTHO05D004887 3.2e-48 195.7 98 92.9
Psat7g161320 Pisum sativum HOM05D004191 ORTHO05D004887 1.2e-47 193.7 139 69.1
CDE05G2537 Ceratophyllum demersum HOM05D004191 ORTHO05D004887 2.7e-47 192.6 106 89.6
AUR62030012 Chenopodium quinoa HOM05D004191 ORTHO05D004887 1.8e-46 189.9 181 59.7
MCO14G457 Micromonas commoda HOM05D004191 ORTHO05D004887 1.5e-45 186.8 175 53.1
TWI38G1856 Tripterygium wilfordii HOM05D004191 ORTHO05D004887 2.2e-44 183.0 103 83.5
SEGI_28528 Sequoiadendron giganteum HOM05D004191 ORTHO05D004887 4.5e-42 175.3 98 82.7
Nn5g28123 Nelumbo nucifera HOM05D004191 ORTHO05D004887 3.6e-39 165.6 85 96.5
HanXRQChr11g0332951 Helianthus annuus HOM05D004191 ORTHO05D004887 1.0e-30 137.5 142 56.3
Pp3c2_32190 Physcomitrium patens HOM05D004191 ORTHO05D004887 2.6e-21 106.3 68 70.6
Cfa020409 Carpinus fangiana HOM05D004191 ORTHO05D004887 4.1e-19 99.0 52 94.2
COL.COLO4_37955 Corchorus olitorius HOM05D004191 ORTHO05D004887 5.4e-19 98.6 52 96.2
Haze_09622 Corylus avellana HOM05D004191 ORTHO05D004887 1.1e-16 90.9 49 91.8
Actinidia19733 Actinidia chinensis HOM05D004191 ORTHO05D004887 8.1e-15 84.7 41 95.1
Haze_09618 Corylus avellana HOM05D004191 ORTHO05D004887 1.4e-14 84.0 45 91.1
Medtr4g027400 Medicago truncatula HOM05D004191 ORTHO05D004887 6.8e-14 81.6 47 85.1
Rhsim01G0090000 Rhododendron simsii HOM05D004191 ORTHO05D004887 4.4e-13 79.0 92 52.2
Ah.12g056770 Amaranthus hybridus HOM05D004191 ORTHO05D004887 1.3e-12 77.4 68 57.4
Ah.07g199550 Amaranthus hybridus HOM05D004191 ORTHO05D004887 1.7e-12 77.0 41 87.8
Ah.07g199480 Amaranthus hybridus HOM05D004191 ORTHO05D060174 1.9e-11 73.6 39 84.6


User provided reference genes

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