Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0034374 Camellia sinensis var. sinensis HOM05D007489 ORTHO05D008037 0.0e+00 1580.1 864 100.0
Rhsim02G0140400 Rhododendron simsii HOM05D007489 ORTHO05D008037 2.3e-234 816.2 864 56.8
Dinv40650 Davidia involucrata HOM05D007489 ORTHO05D008037 7.1e-199 698.4 851 52.6
Hma1.2p1_0155F.1_g068400 Hydrangea macrophylla HOM05D007489 ORTHO05D008037 7.9e-174 615.1 828 52.9
Lj1A1196T41 Lonicera japonica HOM05D007489 ORTHO05D008037 5.4e-138 496.1 772 46.6
TAR627G1016 Trochodendron aralioides HOM05D007489 ORTHO05D008037 7.0e-138 495.7 861 41.8
Prupe.4G057700 Prunus persica HOM05D007489 ORTHO05D008037 1.1e-109 402.1 844 39.6
Potri.011G063500 Populus trichocarpa HOM05D007489 ORTHO05D008037 5.6e-103 379.8 806 38.6
Sabra11G0045300 Salix brachista HOM05D007489 ORTHO05D008037 7.3e-103 379.4 857 37.5
MD10G1283800 Malus domestica HOM05D007489 ORTHO05D008037 4.0e-101 373.6 859 36.8
Manes.16G035700 Manihot esculenta HOM05D007489 ORTHO05D008037 2.4e-98 364.4 987 34.3
RcHm_v2.0_Chr7g0215591 Rosa chinensis HOM05D007489 ORTHO05D008037 3.5e-97 360.5 845 39.6
Duzib235G0638 Durio zibethinus HOM05D007489 ORTHO05D008037 6.0e-97 359.8 833 36.6
Duzib192G0524 Durio zibethinus HOM05D007489 ORTHO05D008037 5.1e-96 356.7 828 37.8
ECA234G3308 Erigeron canadensis HOM05D007489 ORTHO05D008037 1.8e-93 348.2 833 35.8
Haze_06275 Corylus avellana HOM05D007489 ORTHO05D008037 5.3e-93 346.7 901 35.4
Lsat_1_v5_gn_4_50401 Lactuca sativa HOM05D007489 ORTHO05D008037 5.8e-92 343.2 825 35.3
Thecc.06G175600 Theobroma cacao HOM05D007489 ORTHO05D008037 1.1e-90 339.0 795 38.0
Glyma.07G204500 Glycine max HOM05D007489 ORTHO05D008037 9.3e-90 335.9 834 35.3
Nn1g09012 Nelumbo nucifera HOM05D007489 ORTHO05D008037 3.5e-89 334.0 828 35.6
RcHm_v2.0_Chr7g0216741 Rosa chinensis HOM05D007489 ORTHO05D008037 3.0e-88 330.9 857 34.5
FAN08G0692 Fragaria x ananassa HOM05D007489 ORTHO05D008037 6.7e-88 329.7 877 35.3
Aqoxy5G02160 Aquilegia oxysepala HOM05D007489 ORTHO05D008037 3.7e-86 323.9 858 35.2
Gohir.D10G031400 Gossypium hirsutum HOM05D007489 ORTHO05D008037 1.4e-85 322.0 848 34.7
FvH4_5g26040 Fragaria vesca HOM05D007489 ORTHO05D008037 1.8e-85 321.6 850 35.9
FAN04G2784 Fragaria x ananassa HOM05D007489 ORTHO05D008037 2.9e-83 314.3 869 34.6
Oeu041109.2 Olea europaea HOM05D007489 ORTHO05D008037 7.1e-82 309.7 899 33.9
TPR.G16271 Trifolium pratense HOM05D007489 ORTHO05D008037 1.6e-81 308.5 861 32.6
FAN18G0613 Fragaria x ananassa HOM05D007489 ORTHO05D008037 8.7e-80 302.8 884 34.2
CAN.G79.55 Capsicum annuum HOM05D007489 ORTHO05D008037 1.9e-79 301.6 853 33.4
HanXRQChr11g0327141 Helianthus annuus HOM05D007489 ORTHO05D008037 3.7e-78 297.4 817 34.5
Medtr4g087875 Medicago truncatula HOM05D007489 ORTHO05D008037 2.4e-77 294.7 836 32.9
Phvul.003G057800 Phaseolus vulgaris HOM05D007489 ORTHO05D008037 5.3e-77 293.5 854 32.4
MELO3C007230.2 Cucumis melo HOM05D007489 ORTHO05D008037 4.5e-76 290.4 831 32.0
Lj4g0021888 Lotus japonicus HOM05D007489 ORTHO05D008037 7.6e-76 289.7 844 33.1
Gorai.011G033000 Gossypium raimondii HOM05D007489 ORTHO05D008037 4.9e-75 287.0 836 33.1
Sc05g0007220 Simmondsia chinensis HOM05D007489 ORTHO05D008037 9.3e-74 282.7 877 31.8
PGR004G0633 Punica granatum HOM05D007489 ORTHO05D008037 7.4e-71 273.1 849 31.8
Sopen02g022090 Solanum pennellii HOM05D007489 ORTHO05D008037 7.4e-71 273.1 890 30.9
ClCG01G023550 Citrullus lanatus HOM05D007489 ORTHO05D008037 3.7e-70 270.8 872 31.7
Gohir.A10G030500 Gossypium hirsutum HOM05D007489 ORTHO05D008037 3.7e-70 270.8 814 32.3
Nitab4.5_0001928g0060 Nicotiana tabacum HOM05D007489 ORTHO05D008037 4.1e-69 267.3 837 32.1
Ca_26049_v3 Cicer arietinum L. HOM05D007489 ORTHO05D008037 1.0e-67 262.7 843 31.7
arahy.Tifrunner.gnm1.ann1.S0ULK2 Arachis hypogaea HOM05D007489 ORTHO05D008037 3.2e-66 257.7 850 31.5
CANSAT54G0123 Cannabis sativa HOM05D007489 ORTHO05D008037 9.4e-66 256.1 913 30.4
Sed0003654 Sechium edule HOM05D007489 ORTHO05D008037 2.1e-65 255.0 844 32.2
FAN13G1982 Fragaria x ananassa HOM05D007489 ORTHO05D008037 2.3e-64 251.5 878 31.4
CiPaw.10G057000 Carya illinoinensis HOM05D007489 ORTHO05D008037 1.1e-63 249.2 474 39.9
PSO063G1126 Papaver somniferum HOM05D007489 ORTHO05D008037 1.3e-62 245.7 985 29.0
AT4G18490 Arabidopsis thaliana HOM05D010718 ORTHO05D008037 6.5e-59 233.4 866 30.4
COL.COLO4_31347 Corchorus olitorius HOM05D007489 ORTHO05D008037 6.3e-54 216.9 929 30.8
AL7G35790 Arabidopsis lyrata HOM05D010718 ORTHO05D008037 3.1e-53 214.5 872 29.1
Atru.chr10.1727 Acer truncatum HOM05D007489 ORTHO05D008037 1.5e-52 212.2 346 50.6
arahy.Tifrunner.gnm1.ann1.X1E7Z2 Arachis hypogaea HOM05D007489 ORTHO05D008037 1.0e-51 209.5 824 29.6
Migut.J01535 Erythranthe guttata HOM05D007489 ORTHO05D008037 1.2e-49 202.6 772 29.8
Thhalv10024499m.g Eutrema salsugineum HOM05D010718 ORTHO05D008037 4.7e-49 200.7 836 28.8
CARHR225330 Cardamine hirsuta HOM05D010718 ORTHO05D008037 8.0e-49 199.9 888 29.3
Sp7g15530 Schrenkiella parvula HOM05D010718 ORTHO05D008037 8.0e-49 199.9 905 28.5
GSVIVG01021171001 Vitis vinifera HOM05D007489 ORTHO05D008037 3.0e-48 198.0 341 48.1
MBI06_g31402_MAGBIO Magnolia biondii HOM05D007489 ORTHO05D008037 5.2e-48 197.2 623 30.5
Aa31LG6G1240 Aethionema arabicum HOM05D010718 ORTHO05D008037 4.4e-47 194.1 840 28.2
CsaV3_6G050690 Cucumis sativus L. HOM05D007489 ORTHO05D008037 7.4e-47 193.4 941 27.0
EL10Ac8g20488 Beta vulgaris HOM05D007489 ORTHO05D008037 9.7e-47 193.0 885 29.0
BcaC06g30581 Brassica carinata HOM05D010718 ORTHO05D008037 1.5e-42 179.1 842 28.9
A03p51330 Brassica napus HOM05D010718 ORTHO05D008037 5.5e-42 177.2 877 28.3
AUR62036546 Chenopodium quinoa HOM05D007489 ORTHO05D008037 9.4e-42 176.4 852 27.9
QL05p044409 Quercus lobata HOM05D007489 ORTHO05D008037 1.4e-40 172.6 265 46.0
C07p49740 Brassica napus HOM05D010718 ORTHO05D008037 2.3e-40 171.8 843 28.0
Carub.0007s2274 Capsella rubella HOM05D010718 ORTHO05D008037 4.0e-40 171.0 869 28.0
BcaNung02709 Brassica carinata HOM05D010718 ORTHO05D008037 7.5e-39 166.8 850 28.0
SalBow6G6000 Salvia bowleyana HOM05D007489 ORTHO05D008037 1.7e-38 165.6 878 27.1
BraA03t14214Z Brassica rapa HOM05D010718 ORTHO05D008037 4.8e-38 164.1 875 28.5
SalBow6G3268 Salvia bowleyana HOM05D007489 ORTHO05D008037 8.3e-38 163.3 883 26.6
BolC7t45475H Brassica oleracea HOM05D010718 ORTHO05D008037 1.8e-37 162.2 845 27.7
Nitab4.5_0000376g0220 Nicotiana tabacum HOM05D007489 ORTHO05D008037 2.0e-36 158.7 844 26.5
Lalb_Chr16g0384211 Lupinus albus HOM05D007489 ORTHO05D008037 5.9e-36 157.1 513 31.8
DCAR_004024 Daucus carota HOM05D007489 ORTHO05D008037 8.5e-35 153.3 267 43.1
BraA01t00996Z Brassica rapa HOM05D010718 ORTHO05D008037 1.5e-31 142.5 890 26.0
VMungo0251G2273 Vigna mungo HOM05D007489 ORTHO05D008037 2.0e-31 142.1 567 28.2
SGA_v2.0_scaffold66G22379 Striga asiatica HOM05D007489 ORTHO05D008037 5.7e-31 140.6 856 25.2
Cpa.g.sc7.37 Carica papaya HOM05D007489 ORTHO05D008037 1.7e-30 139.0 347 34.0
C01p12440 Brassica napus HOM05D010718 ORTHO05D008037 4.8e-30 137.5 896 25.0
Solyc02g077210.1 Solanum lycopersicum HOM05D007489 ORTHO05D008037 6.3e-30 137.1 229 38.9
A01p10500 Brassica napus HOM05D010718 ORTHO05D008037 3.1e-29 134.8 894 26.0
Glyma.13G171550 Glycine max HOM05D007489 ORTHO05D008037 1.0e-27 129.8 162 51.9
Os01g0755100 Oryza sativa ssp. japonica HOM05D007489 ORTHO05D008037 6.6e-27 127.1 864 25.7
Peaxi162Scf00223g01419 Petunia axillaris HOM05D007489 ORTHO05D008037 8.0e-25 120.2 293 33.8
PGR004G2208 Punica granatum HOM05D007489 ORTHO05D008037 1.4e-24 119.4 165 44.8
MD05G1304700 Malus domestica HOM05D007489 ORTHO05D008037 2.3e-24 118.6 154 51.3
Ciclev10017982m.g Citrus clementina HOM05D007489 ORTHO05D008037 3.0e-24 118.2 190 44.7
MD05G1304800 Malus domestica HOM05D007489 ORTHO05D008037 1.7e-22 112.5 479 33.0
ATR0602G208 Amborella trichopoda HOM05D007489 ORTHO05D008037 8.3e-22 110.2 795 24.9
DCAR_007972 Daucus carota HOM05D007489 ORTHO05D008037 1.4e-21 109.4 105 56.2
Hund23951 Selenicereus undatus HOM05D007489 ORTHO05D008037 4.1e-21 107.8 417 29.0
Zm00001eb152860 Zea mays HOM05D007489 ORTHO05D008037 7.0e-21 107.1 838 25.8
MBI06_g31401_MAGBIO Magnolia biondii HOM05D007489 ORTHO05D008037 2.0e-20 105.5 134 48.5
Glyma.13G171600 Glycine max HOM05D007489 ORTHO05D008037 2.9e-19 101.7 252 34.9
unitig_0.g132 Utricularia gibba HOM05D007489 ORTHO05D008037 1.1e-18 99.8 318 31.8
Peaxi162Scf00223g01422 Petunia axillaris HOM05D007489 ORTHO05D008037 1.9e-18 99.0 229 34.1
SEGI_30603 Sequoiadendron giganteum HOM05D007489 ORTHO05D008037 1.2e-17 96.3 155 40.6
BolC1t01218H Brassica oleracea HOM05D010718 ORTHO05D008037 1.0e-16 93.2 888 24.9
PSO782G2467 Papaver somniferum HOM05D007489 ORTHO05D008037 8.9e-16 90.1 819 23.4
HPP92_007965 Vanilla planifolia HOM05D007489 ORTHO05D008037 2.6e-15 88.6 167 36.5
Aqoxy534s001 Aquilegia oxysepala HOM05D007489 ORTHO05D008037 1.3e-14 86.3 106 45.3
arahy.Tifrunner.gnm1.ann1.8IS92U Arachis hypogaea HOM05D007489 ORTHO05D008037 1.7e-11 75.9 65 63.1
CDE08G0488 Ceratophyllum demersum HOM05D049506 ORTHO05D043857 3.0e-11 75.1 205 33.7
SalBow2G2687 Salvia bowleyana HOM05D007489 ORTHO05D008037 2.5e-10 72.0 64 50.0
AUR62031141 Chenopodium quinoa HOM05D007489 ORTHO05D008037 1.6e-09 69.3 785 22.0
Ah.10g026690 Amaranthus hybridus HOM05D008762 ORTHO05D011252 2.1e-09 68.9 191 34.0
SalBow1G4805 Salvia bowleyana HOM05D007489 ORTHO05D008037 2.8e-09 68.6 64 48.4
QL05p044176 Quercus lobata HOM05D007489 ORTHO05D008037 6.2e-09 67.4 131 38.9
HPP92_008016 Vanilla planifolia HOM05D007489 ORTHO05D008037 1.4e-08 66.2 827 23.1
SMO340G0226 Selaginella moellendorffii HOM05D029666 ORTHO05D008037 6.8e-08 63.9 56 53.6
SMO356G0683 Selaginella moellendorffii HOM05D029666 ORTHO05D008037 8.9e-08 63.5 56 53.6
Eucgr.D00548 Eucalyptus grandis HOM05D007489 ORTHO05D008037 4.9e-06 57.8 32 84.4


User provided reference genes

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