Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0034359 Camellia sinensis var. sinensis HOM05D000290 ORTHO05D008407 1.0e-67 260.0 135 100.0
CSS0024696 Camellia sinensis var. sinensis HOM05D000290 ORTHO05D008407 1.2e-63 246.5 132 97.0
Actinidia14146 Actinidia chinensis HOM05D000290 ORTHO05D008407 1.3e-59 233.0 132 89.4
Hma1.2p1_0272F.1_g109150 Hydrangea macrophylla HOM05D000290 ORTHO05D008407 3.3e-58 228.4 135 86.7
Hma1.2p1_1350F.1_g277386 Hydrangea macrophylla HOM05D000290 ORTHO05D008407 3.3e-58 228.4 135 86.7
Dinv11340 Davidia involucrata HOM05D000290 ORTHO05D008407 9.5e-58 226.9 132 89.4
vmacro05108 Vaccinium macrocarpon HOM05D000290 ORTHO05D008407 6.2e-57 224.2 132 86.4
MSTRG.25810 Avicennia marina HOM05D000290 ORTHO05D008407 2.3e-56 222.2 132 87.1
GSVIVG01035536001 Vitis vinifera HOM05D000290 ORTHO05D008407 2.3e-56 222.2 132 87.1
Medtr1g009860 Medicago truncatula HOM05D000290 ORTHO05D008407 8.9e-56 220.3 132 83.3
Rhsim07G0170000 Rhododendron simsii HOM05D000290 ORTHO05D008407 1.2e-55 219.9 132 86.4
VMungo0647G1680 Vigna mungo HOM05D000290 ORTHO05D008407 1.2e-55 219.9 132 84.1
Cc00_g03620 Coffea canephora HOM05D000290 ORTHO05D008407 2.0e-55 219.2 132 84.1
Psat6g007640 Pisum sativum HOM05D000290 ORTHO05D008407 2.0e-55 219.2 132 84.1
TPR.G12030 Trifolium pratense HOM05D000290 ORTHO05D008407 2.0e-55 219.2 132 83.3
Cpa.g.sc905.1 Carica papaya HOM05D000290 ORTHO05D008407 2.6e-55 218.8 132 83.3
Duzib150G0945 Durio zibethinus HOM05D000290 ORTHO05D008407 5.8e-55 217.6 132 82.6
Thecc.09G006000 Theobroma cacao HOM05D000290 ORTHO05D008407 5.8e-55 217.6 132 81.8
TWI63G0771 Tripterygium wilfordii HOM05D000290 ORTHO05D008407 1.7e-54 216.1 133 82.7
TAR629G1235 Trochodendron aralioides HOM05D000290 ORTHO05D008407 2.9e-54 215.3 132 83.3
Eucgr.C04003 Eucalyptus grandis HOM05D000290 ORTHO05D008407 3.7e-54 214.9 132 83.3
Glyma.14G133600 Glycine max HOM05D000290 ORTHO05D008407 3.7e-54 214.9 130 83.1
QL12p024905 Quercus lobata HOM05D000290 ORTHO05D008407 6.4e-54 214.2 131 80.9
Cfa013258 Carpinus fangiana HOM05D000290 ORTHO05D008407 8.3e-54 213.8 132 81.8
Glyma.17G202300 Glycine max HOM05D000290 ORTHO05D008407 8.3e-54 213.8 132 82.6
TWI32G0093 Tripterygium wilfordii HOM05D000290 ORTHO05D008407 8.3e-54 213.8 132 83.3
Ca_12873_v3 Cicer arietinum L. HOM05D000290 ORTHO05D008407 1.4e-53 213.0 132 80.3
Lj5g0008978 Lotus japonicus HOM05D000290 ORTHO05D008407 1.4e-53 213.0 132 81.1
arahy.Tifrunner.gnm1.ann1.L6V9CD Arachis hypogaea HOM05D000290 ORTHO05D008407 1.9e-53 212.6 132 79.5
HanXRQChr03g0082491 Helianthus annuus HOM05D000290 ORTHO05D008407 2.4e-53 212.2 132 82.6
Aqoxy2G00064 Aquilegia oxysepala HOM05D000290 ORTHO05D008407 3.2e-53 211.8 132 81.1
Lsat_1_v5_gn_5_61080 Lactuca sativa HOM05D000290 ORTHO05D008407 3.2e-53 211.8 132 82.6
Os11g0216300 Oryza sativa ssp. japonica HOM05D000290 ORTHO05D008407 4.1e-53 211.5 131 80.9
Lalb_Chr24g0402461 Lupinus albus HOM05D000290 ORTHO05D008407 5.4e-53 211.1 132 81.1
arahy.Tifrunner.gnm1.ann1.K4IKSC Arachis hypogaea HOM05D000290 ORTHO05D008407 7.0e-53 210.7 132 78.8
MD15G1109100 Malus domestica HOM05D000290 ORTHO05D008407 9.2e-53 210.3 132 81.1
SalBow4G1005 Salvia bowleyana HOM05D000290 ORTHO05D008407 9.2e-53 210.3 132 83.3
PGR044G0947 Punica granatum HOM05D000290 ORTHO05D008407 1.2e-52 209.9 132 83.3
CiPaw.07G214000 Carya illinoinensis HOM05D000290 ORTHO05D008407 1.6e-52 209.5 132 78.8
Oeu044973.2 Olea europaea HOM05D000290 ORTHO05D008407 2.0e-52 209.1 133 83.5
THA.LOC104803595 Tarenaya hassleriana HOM05D000290 ORTHO05D008407 2.0e-52 209.1 131 79.4
COL.COLO4_19046 Corchorus olitorius HOM05D000290 ORTHO05D008407 2.7e-52 208.8 132 80.3
ATR0697G300 Amborella trichopoda HOM05D000290 ORTHO05D008407 4.6e-52 208.0 130 80.0
MBI04_g35067_MAGBIO Magnolia biondii HOM05D000290 ORTHO05D008407 4.6e-52 208.0 132 80.3
SGA_v2.0_scaffold269G46293 Striga asiatica HOM05D000290 ORTHO05D008407 6.0e-52 207.6 136 79.4
SGA_v2.0_scaffold447G51748 Striga asiatica HOM05D000290 ORTHO05D008407 6.0e-52 207.6 136 79.4
Migut.A00509 Erythranthe guttata HOM05D000290 ORTHO05D008407 1.0e-51 206.8 132 81.1
Prupe.1G461300 Prunus persica HOM05D000290 ORTHO05D008407 1.0e-51 206.8 132 78.8
Phvul.001G058600 Phaseolus vulgaris HOM05D000290 ORTHO05D008407 1.3e-51 206.5 132 81.1
Nn1g09357 Nelumbo nucifera HOM05D000290 ORTHO05D008407 1.7e-51 206.1 133 77.4
MD08G1131400 Malus domestica HOM05D000290 ORTHO05D008407 2.3e-51 205.7 132 79.5
Manes.16G136300 Manihot esculenta HOM05D000290 ORTHO05D008407 2.3e-51 205.7 132 78.0
Gohir.A05G065300 Gossypium hirsutum HOM05D000290 ORTHO05D008407 3.0e-51 205.3 132 78.8
Gorai.009G068700 Gossypium raimondii HOM05D000290 ORTHO05D008407 6.6e-51 204.1 132 78.0
CAN.G195.28 Capsicum annuum HOM05D000290 ORTHO05D008407 1.1e-50 203.4 131 77.9
Zm00001eb168450 Zea mays HOM05D000290 ORTHO05D008407 1.1e-50 203.4 131 77.1
Gohir.D05G067900 Gossypium hirsutum HOM05D000290 ORTHO05D008407 1.5e-50 203.0 132 77.3
Potri.006G275600 Populus trichocarpa HOM05D000290 ORTHO05D008407 1.9e-50 202.6 132 78.0
Peaxi162Scf00445g01021 Petunia axillaris HOM05D000290 ORTHO05D008407 2.5e-50 202.2 132 75.8
Sed0011591 Sechium edule HOM05D000290 ORTHO05D008407 5.6e-50 201.1 132 79.5
Nitab4.5_0000907g0010 Nicotiana tabacum HOM05D000290 ORTHO05D008407 7.3e-50 200.7 132 75.0
CDE01G0669 Ceratophyllum demersum HOM05D000290 ORTHO05D008407 9.5e-50 200.3 131 77.1
MELO3C011196.2 Cucumis melo HOM05D000290 ORTHO05D008407 9.5e-50 200.3 132 79.5
CsaV3_2G031460 Cucumis sativus L. HOM05D000290 ORTHO05D008407 9.5e-50 200.3 132 79.5
DCAR_004578 Daucus carota HOM05D000290 ORTHO05D008407 9.5e-50 200.3 132 78.8
Sabra06G0213300 Salix brachista HOM05D000280 ORTHO05D008407 9.5e-50 200.3 131 78.6
RcHm_v2.0_Chr6g0304841 Rosa chinensis HOM05D000290 ORTHO05D008407 1.2e-49 199.9 132 76.5
Nitab4.5_0001131g0050 Nicotiana tabacum HOM05D000290 ORTHO05D008407 2.1e-49 199.1 132 74.2
Sed0026035 Sechium edule HOM05D000290 ORTHO05D008407 2.1e-49 199.1 132 78.0
Atru.chr7.2628 Acer truncatum HOM05D000290 ORTHO05D008407 2.8e-49 198.7 132 78.0
Lj7A748T61 Lonicera japonica HOM05D000290 ORTHO05D008407 2.8e-49 198.7 131 76.3
Solyc08g074560.3 Solanum lycopersicum HOM05D000290 ORTHO05D008407 2.8e-49 198.7 132 74.2
ClCG08G012730 Citrullus lanatus HOM05D000290 ORTHO05D008407 1.1e-48 196.8 132 78.0
Sopen08g023170 Solanum pennellii HOM05D000290 ORTHO05D008407 1.1e-48 196.8 132 74.2
EL10Ac2g03734 Beta vulgaris HOM05D000290 ORTHO05D008407 1.4e-48 196.4 130 75.4
FAN20G0398 Fragaria x ananassa HOM05D000280 ORTHO05D008407 1.8e-48 196.1 131 74.8
FAN27G1572 Fragaria x ananassa HOM05D000280 ORTHO05D008407 1.8e-48 196.1 131 74.8
FAN15G1693 Fragaria x ananassa HOM05D000280 ORTHO05D008407 4.0e-48 194.9 131 74.8
HPP92_025925 Vanilla planifolia HOM05D000290 ORTHO05D008407 4.0e-48 194.9 132 72.0
ECA240G4368 Erigeron canadensis HOM05D000290 ORTHO05D008407 5.2e-48 194.5 132 77.3
FvH4_2g36931 Fragaria vesca HOM05D000290 ORTHO05D008407 5.2e-48 194.5 132 75.0
Ciclev10007657m.g Citrus clementina HOM05D000290 ORTHO05D008407 6.8e-48 194.1 132 75.0
CANSAT25G1543 Cannabis sativa HOM05D000290 ORTHO05D008407 8.9e-48 193.7 132 74.2
CARHR239270 Cardamine hirsuta HOM05D000290 ORTHO05D008407 1.3e-46 189.9 132 72.7
AT4G31390 Arabidopsis thaliana HOM05D000290 ORTHO05D008407 1.7e-46 189.5 132 72.7
Aa31LG2G18960 Aethionema arabicum HOM05D000290 ORTHO05D008407 2.2e-46 189.1 132 73.5
AL7G20670 Arabidopsis lyrata HOM05D000290 ORTHO05D008407 2.2e-46 189.1 132 72.7
AUR62009046 Chenopodium quinoa HOM05D000290 ORTHO05D008407 2.9e-46 188.7 130 72.3
Carub.0007s0917 Capsella rubella HOM05D000290 ORTHO05D008407 3.7e-46 188.3 132 72.7
Thhalv10024610m.g Eutrema salsugineum HOM05D000290 ORTHO05D008407 1.9e-45 186.0 132 70.5
Sp7g29250 Schrenkiella parvula HOM05D000290 ORTHO05D008407 1.9e-45 186.0 132 70.5
Hund19400 Selenicereus undatus HOM05D000290 ORTHO05D008407 3.2e-45 185.3 132 74.2
BcaC09g51919 Brassica carinata HOM05D000290 ORTHO05D008407 7.1e-45 184.1 132 70.5
A01p06880 Brassica napus HOM05D000290 ORTHO05D008407 7.1e-45 184.1 132 70.5
C01p07650 Brassica napus HOM05D000290 ORTHO05D008407 7.1e-45 184.1 132 70.5
BolC1t00745H Brassica oleracea HOM05D000290 ORTHO05D008407 7.1e-45 184.1 132 70.5
BraA01t00639Z Brassica rapa HOM05D000290 ORTHO05D008407 7.1e-45 184.1 132 70.5
PSO675G6701 Papaver somniferum HOM05D000290 ORTHO05D008407 9.2e-45 183.7 130 73.1
Ah.11g043730 Amaranthus hybridus HOM05D000290 ORTHO05D008407 1.0e-43 180.3 129 71.3
SEGI_21212 Sequoiadendron giganteum HOM05D000290 ORTHO05D008407 1.2e-39 166.8 132 64.4
AUR62020616 Chenopodium quinoa HOM05D000290 ORTHO05D008407 9.2e-37 157.1 110 72.7
SMO118G0519 Selaginella moellendorffii HOM05D000290 ORTHO05D008407 7.8e-36 154.1 132 58.3
BcaNung04594 Brassica carinata HOM05D000844 ORTHO05D008407 3.9e-35 151.8 112 69.6
PSO541G0362 Papaver somniferum HOM05D000290 ORTHO05D008407 8.6e-35 150.6 110 73.6
Mapoly0036s0074 Marchantia polymorpha HOM05D000290 ORTHO05D008407 7.3e-34 147.5 140 56.4
AagrBONN_evm.TU.Sc2ySwM_344.4923 Anthoceros agrestis HOM05D000290 ORTHO05D008407 1.6e-33 146.4 138 57.2
HPP92_025927 Vanilla planifolia HOM05D000290 ORTHO05D008407 2.1e-33 146.0 157 52.2
Sc09g0008040 Simmondsia chinensis HOM05D000290 ORTHO05D008407 1.2e-31 140.2 95 74.7
Pp3c10_18310 Physcomitrium patens HOM05D000290 ORTHO05D008407 4.9e-30 134.8 140 52.1
Cre13.g581850 Chlamydomonas reinhardtii HOM05D000290 ORTHO05D008407 2.4e-21 105.9 130 43.8
MCO06G141 Micromonas commoda HOM05D000290 ORTHO05D008407 1.6e-17 93.2 128 39.1
PRCOL_00007283 Prasinoderma coloniale HOM05D000290 ORTHO05D008407 4.6e-12 75.1 134 32.8


User provided reference genes

Program Settings