Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0034357 Camellia sinensis var. sinensis HOM05D005222 ORTHO05D006230 4.1e-69 264.6 134 100.0
Dinv23190 Davidia involucrata HOM05D005222 ORTHO05D006230 1.4e-24 116.7 68 82.4
CSS0012412 Camellia sinensis var. sinensis HOM05D005222 ORTHO05D006230 2.3e-24 115.9 67 88.1
Actinidia25544 Actinidia chinensis HOM05D005222 ORTHO05D006230 3.1e-24 115.5 69 79.7
Potri.015G102000 Populus trichocarpa HOM05D005222 ORTHO05D006230 4.0e-24 115.2 65 84.6
Rhsim08G0194200 Rhododendron simsii HOM05D005222 ORTHO05D006230 4.0e-24 115.2 73 78.1
CSS0000670 Camellia sinensis var. sinensis HOM05D005222 ORTHO05D006230 6.8e-24 114.4 67 86.6
PSO063G7191 Papaver somniferum HOM05D005222 ORTHO05D006230 8.9e-24 114.0 68 77.9
PSO782G1904 Papaver somniferum HOM05D005222 ORTHO05D006230 8.9e-24 114.0 68 77.9
Sabra15G0122200 Salix brachista HOM05D005222 ORTHO05D006230 8.9e-24 114.0 65 83.1
PGSC0003DMG400027040 Solanum tuberosum HOM05D005222 ORTHO05D006230 1.2e-23 113.6 72 75.0
Manes.06G123800 Manihot esculenta HOM05D005222 ORTHO05D006230 2.0e-23 112.8 68 79.4
GSVIVG01008600001 Vitis vinifera HOM05D005222 ORTHO05D006230 2.0e-23 112.8 67 80.6
Nn3g16353 Nelumbo nucifera HOM05D005222 ORTHO05D006230 2.6e-23 112.5 68 77.9
Sabra12G0075900 Salix brachista HOM05D005222 ORTHO05D006230 2.6e-23 112.5 129 51.2
Thecc.03G136000 Theobroma cacao HOM05D005222 ORTHO05D006230 3.4e-23 112.1 64 84.4
TWI39G0019 Tripterygium wilfordii HOM05D005222 ORTHO05D006230 3.4e-23 112.1 64 84.4
vmacro16739 Vaccinium macrocarpon HOM05D005222 ORTHO05D006230 3.4e-23 112.1 74 78.4
Lsat_1_v5_gn_4_83361 Lactuca sativa HOM05D005222 ORTHO05D006230 7.5e-23 110.9 68 75.0
TWI23G0048 Tripterygium wilfordii HOM05D005222 ORTHO05D006230 7.5e-23 110.9 64 82.8
Ciclev10033230m.g Citrus clementina HOM05D005222 ORTHO05D006230 2.2e-22 109.4 67 76.1
Gorai.008G209300 Gossypium raimondii HOM05D005222 ORTHO05D006230 2.2e-22 109.4 74 71.6
PGR083G1056 Punica granatum HOM05D005222 ORTHO05D006230 2.2e-22 109.4 74 77.0
Solyc06g072600.3 Solanum lycopersicum HOM05D005222 ORTHO05D006230 2.2e-22 109.4 67 74.6
Sopen06g028950 Solanum pennellii HOM05D005222 ORTHO05D006230 2.2e-22 109.4 67 74.6
Manes.14G047400 Manihot esculenta HOM05D005222 ORTHO05D006230 2.9e-22 109.0 65 78.5
Cc04_g09830 Coffea canephora HOM05D005222 ORTHO05D006230 4.9e-22 108.2 68 73.5
DCAR_016362 Daucus carota HOM05D005222 ORTHO05D006230 4.9e-22 108.2 64 78.1
Duzib205G1725 Durio zibethinus HOM05D005222 ORTHO05D006230 4.9e-22 108.2 69 75.4
HanXRQChr09g0273701 Helianthus annuus HOM05D005222 ORTHO05D006230 4.9e-22 108.2 67 73.1
Peaxi162Scf01064g00238 Petunia axillaris HOM05D005222 ORTHO05D006230 4.9e-22 108.2 67 74.6
Atru.chr6.1879 Acer truncatum HOM05D005222 ORTHO05D006230 6.4e-22 107.8 63 79.4
EL10Ac5g11344 Beta vulgaris HOM05D005222 ORTHO05D006230 6.4e-22 107.8 67 71.6
Dinv11207 Davidia involucrata HOM05D005222 ORTHO05D006230 6.4e-22 107.8 68 73.5
Gohir.A12G192500 Gossypium hirsutum HOM05D005222 ORTHO05D006230 6.4e-22 107.8 64 79.7
TAR629G0657 Trochodendron aralioides HOM05D005222 ORTHO05D006230 6.4e-22 107.8 63 81.0
CiPaw.11G003300 Carya illinoinensis HOM05D005222 ORTHO05D006230 8.3e-22 107.5 67 73.1
Eucgr.B00077 Eucalyptus grandis HOM05D005222 ORTHO05D006230 8.3e-22 107.5 74 74.3
Potri.012G103400 Populus trichocarpa HOM05D005222 ORTHO05D006230 8.3e-22 107.5 65 78.5
Aa31LG3G7230 Aethionema arabicum HOM05D005222 ORTHO05D006230 1.4e-21 106.7 64 76.6
Peaxi162Scf00516g00032 Petunia axillaris HOM05D005222 ORTHO05D006230 1.4e-21 106.7 67 73.1
Rhsim12G0178200 Rhododendron simsii HOM05D005222 ORTHO05D006230 1.4e-21 106.7 69 73.9
Sc22g0003810 Simmondsia chinensis HOM05D005222 ORTHO05D006230 1.4e-21 106.7 67 71.6
TAR374G1676 Trochodendron aralioides HOM05D005222 ORTHO05D006230 1.4e-21 106.7 68 73.5
Carub.0008s1080 Capsella rubella HOM05D005222 ORTHO05D006230 1.9e-21 106.3 63 77.8
Haze_07194 Corylus avellana HOM05D005222 ORTHO05D006230 1.9e-21 106.3 67 73.1
Gohir.D12G194600 Gossypium hirsutum HOM05D005222 ORTHO05D006230 1.9e-21 106.3 64 78.1
MBI07_g24748_MAGBIO Magnolia biondii HOM05D005222 ORTHO05D006230 1.9e-21 106.3 65 75.4
Hund02474 Selenicereus undatus HOM05D005222 ORTHO05D006230 1.9e-21 106.3 63 77.8
CAN.G65.111 Capsicum annuum HOM05D005222 ORTHO05D006230 2.4e-21 105.9 67 70.1
Cfa018742 Carpinus fangiana HOM05D005222 ORTHO05D006230 2.4e-21 105.9 67 73.1
Duzib084G0042 Durio zibethinus HOM05D005222 ORTHO05D006230 3.2e-21 105.5 64 76.6
Nitab4.5_0001464g0100 Nicotiana tabacum HOM05D005222 ORTHO05D006230 4.1e-21 105.1 68 70.6
Sc04g0000390 Simmondsia chinensis HOM05D005222 ORTHO05D006230 4.1e-21 105.1 67 70.1
ECA232G5061 Erigeron canadensis HOM05D005222 ORTHO05D006230 5.4e-21 104.8 67 70.1
Hma1.2p1_0168F.1_g074260 Hydrangea macrophylla HOM05D005222 ORTHO05D006230 5.4e-21 104.8 67 73.1
Sp6g12920 Schrenkiella parvula HOM05D005222 ORTHO05D006230 7.1e-21 104.4 63 76.2
CAN.G758.13 Capsicum annuum HOM05D005222 ORTHO05D006230 9.2e-21 104.0 68 69.1
CsaV3_1G000290 Cucumis sativus L. HOM05D005222 ORTHO05D006230 9.2e-21 104.0 66 72.7
MD06G1135800 Malus domestica HOM05D005222 ORTHO05D006230 9.2e-21 104.0 65 72.3
Ca_16071_v3 Cicer arietinum L. HOM05D005222 ORTHO05D006230 1.2e-20 103.6 64 71.9
ClCG06G018150 Citrullus lanatus HOM05D005222 ORTHO05D006230 1.2e-20 103.6 69 68.1
Glyma.06G166600 Glycine max HOM05D005222 ORTHO05D006230 1.2e-20 103.6 67 68.7
Lalb_Chr08g0237411 Lupinus albus HOM05D005222 ORTHO05D006230 1.6e-20 103.2 64 71.9
Glyma.04G198900 Glycine max HOM05D005222 ORTHO05D006230 2.1e-20 102.8 64 71.9
Phvul.009G163100 Phaseolus vulgaris HOM05D005222 ORTHO05D006230 2.1e-20 102.8 64 71.9
RcHm_v2.0_Chr7g0189291 Rosa chinensis HOM05D005222 ORTHO05D006230 2.1e-20 102.8 67 68.7
AT5G50810 Arabidopsis thaliana HOM05D005222 ORTHO05D006230 2.7e-20 102.4 63 74.6
Migut.D01295 Erythranthe guttata HOM05D005222 ORTHO05D006230 2.7e-20 102.4 65 69.2
MD14G1151000 Malus domestica HOM05D005222 ORTHO05D006230 2.7e-20 102.4 65 70.8
Prupe.5G146200 Prunus persica HOM05D005222 ORTHO05D006230 2.7e-20 102.4 64 71.9
GSVIVG01033034001 Vitis vinifera HOM05D005222 ORTHO05D006230 3.5e-20 102.1 67 70.1
CANSAT80G0210 Cannabis sativa HOM05D005222 ORTHO05D006230 6.0e-20 101.3 64 70.3
AUR62029544 Chenopodium quinoa HOM05D005222 ORTHO05D006230 6.0e-20 101.3 67 65.7
AUR62034814 Chenopodium quinoa HOM05D005222 ORTHO05D006230 6.0e-20 101.3 67 65.7
FAN08G1832 Fragaria x ananassa HOM05D005222 ORTHO05D006230 6.0e-20 101.3 67 67.2
ClCG04G004850 Citrullus lanatus HOM05D005222 ORTHO05D006230 7.8e-20 100.9 64 76.6
Nitab4.5_0011312g0030 Nicotiana tabacum HOM05D005222 ORTHO05D006230 7.8e-20 100.9 68 66.2
THA.LOC104811566 Tarenaya hassleriana HOM05D005222 ORTHO05D006230 7.8e-20 100.9 63 73.0
COL.COLO4_16662 Corchorus olitorius HOM05D005222 ORTHO05D006230 1.0e-19 100.5 55 85.5
MELO3C026182.2 Cucumis melo HOM05D005222 ORTHO05D006230 1.0e-19 100.5 60 78.3
FAN13G0479 Fragaria x ananassa HOM05D005222 ORTHO05D006230 1.3e-19 100.1 67 65.7
Lj1g0004473 Lotus japonicus HOM05D005222 ORTHO05D006230 1.3e-19 100.1 64 70.3
Nitab4.5_0000033g0050 Nicotiana tabacum HOM05D005222 ORTHO05D006230 1.3e-19 100.1 65 72.3
Pp3c22_9040 Physcomitrium patens HOM05D005222 ORTHO05D006230 1.3e-19 100.1 67 65.7
CDE06G2816 Ceratophyllum demersum HOM05D005222 ORTHO05D006230 1.7e-19 99.8 67 62.7
unitig_0.g1255 Utricularia gibba HOM05D005222 ORTHO05D006230 1.7e-19 99.8 65 67.7
FvH4_5g08990 Fragaria vesca HOM05D005222 ORTHO05D006230 2.3e-19 99.4 67 65.7
CDE02G1328 Ceratophyllum demersum HOM05D005222 ORTHO05D006230 3.0e-19 99.0 67 62.7
FAN18G1799 Fragaria x ananassa HOM05D005222 ORTHO05D006230 3.0e-19 99.0 73 61.6
SalBow5G1462 Salvia bowleyana HOM05D005222 ORTHO05D006230 3.0e-19 99.0 65 67.7
PGSC0003DMG400004338 Solanum tuberosum HOM05D005222 ORTHO05D006230 3.9e-19 98.6 67 65.7
ATR0582G313 Amborella trichopoda HOM05D005222 ORTHO05D006230 5.1e-19 98.2 64 68.8
QL05p049336 Quercus lobata HOM05D005222 ORTHO05D006230 6.6e-19 97.8 66 68.2
QL10p001732 Quercus lobata HOM05D005222 ORTHO05D006230 6.6e-19 97.8 66 68.2
CARHR232420 Cardamine hirsuta HOM05D005222 ORTHO05D006230 8.6e-19 97.4 62 72.6
CARHR257460 Cardamine hirsuta HOM05D005222 ORTHO05D006230 1.1e-18 97.1 64 68.8
Sopen03g028390 Solanum pennellii HOM05D005222 ORTHO05D006230 1.1e-18 97.1 67 64.2
VMungo0464G1435 Vigna mungo HOM05D005222 ORTHO05D006230 1.1e-18 97.1 74 62.2
Zm00001eb175490 Zea mays HOM05D005222 ORTHO05D006230 1.1e-18 97.1 65 69.2
FAN04G2766 Fragaria x ananassa HOM05D005222 ORTHO05D006230 1.5e-18 96.7 67 62.7
Os08g0535600 Oryza sativa ssp. japonica HOM05D005222 ORTHO05D006230 1.5e-18 96.7 62 69.4
Zm00001eb036900 Zea mays HOM05D005222 ORTHO05D006230 1.5e-18 96.7 62 69.4
Thhalv10015178m.g Eutrema salsugineum HOM05D005222 ORTHO05D006230 1.9e-18 96.3 63 69.8
Medtr3g098820 Medicago truncatula HOM05D005222 ORTHO05D006230 1.9e-18 96.3 64 64.1
TPR.G21582 Trifolium pratense HOM05D005222 ORTHO05D006230 1.9e-18 96.3 67 64.2
AL8G24980 Arabidopsis lyrata HOM05D005222 ORTHO05D006230 4.3e-18 95.1 54 81.5
Mapoly0022s0111 Marchantia polymorpha HOM05D005222 ORTHO05D006230 4.3e-18 95.1 67 62.7
Glyma.05G202400 Glycine max HOM05D005222 ORTHO05D006230 9.5e-18 94.0 74 62.2
Solyc03g097640.3 Solanum lycopersicum HOM05D005222 ORTHO05D006230 9.5e-18 94.0 65 63.1
arahy.Tifrunner.gnm1.ann1.122S7D Arachis hypogaea HOM05D005222 ORTHO05D006230 1.2e-17 93.6 64 65.6
A03p16580 Brassica napus HOM05D005222 ORTHO05D006230 1.2e-17 93.6 62 69.4
C03p19510 Brassica napus HOM05D005222 ORTHO05D006230 1.2e-17 93.6 62 69.4
BolC3t14332H Brassica oleracea HOM05D005222 ORTHO05D006230 1.2e-17 93.6 62 69.4
BraA03t10945Z Brassica rapa HOM05D005222 ORTHO05D006230 1.2e-17 93.6 62 69.4
SEGI_36916 Sequoiadendron giganteum HOM05D005222 ORTHO05D006230 1.2e-17 93.6 64 67.2
arahy.Tifrunner.gnm1.ann1.5QWD0G Arachis hypogaea HOM05D005222 ORTHO05D006230 1.6e-17 93.2 64 65.6
Sc07g0003580 Simmondsia chinensis HOM05D005222 ORTHO05D006230 2.8e-17 92.4 67 61.2
Lj4g0026334 Lotus japonicus HOM05D005222 ORTHO05D006230 6.2e-17 91.3 67 59.7
Pp3c18_15660 Physcomitrium patens HOM05D005222 ORTHO05D006230 6.2e-17 91.3 64 64.1
CAN.G101.22 Capsicum annuum HOM05D005222 ORTHO05D006230 5.2e-16 88.2 53 73.6
Psat5g053520 Pisum sativum HOM05D001135 ORTHO05D006230 5.2e-16 88.2 51 72.5
BcaC08g43896 Brassica carinata HOM05D005222 ORTHO05D006230 6.8e-16 87.8 62 66.1
C06p12810 Brassica napus HOM05D005222 ORTHO05D006230 1.2e-15 87.0 62 64.5
Aqoxy3G01691 Aquilegia oxysepala HOM05D005222 ORTHO05D006230 1.5e-15 86.7 59 67.8
BcaNung03992 Brassica carinata HOM05D005222 ORTHO05D006230 3.4e-15 85.5 63 60.3
ATR1096G067 Amborella trichopoda HOM05D005222 ORTHO05D006230 4.4e-15 85.1 62 58.1
BcaC09g50823 Brassica carinata HOM05D005222 ORTHO05D006230 4.4e-15 85.1 63 60.3
A01p16290 Brassica napus HOM05D005222 ORTHO05D006230 4.4e-15 85.1 63 60.3
C01p20320 Brassica napus HOM05D005222 ORTHO05D006230 4.4e-15 85.1 63 60.3
BolC1t01961H Brassica oleracea HOM05D005222 ORTHO05D006230 4.4e-15 85.1 63 60.3
BraA01t01568Z Brassica rapa HOM05D005222 ORTHO05D006230 4.4e-15 85.1 63 60.3
Aqoxy5G03239 Aquilegia oxysepala HOM05D005222 ORTHO05D006230 7.6e-15 84.3 78 47.4
MBI13_g38964_MAGBIO Magnolia biondii HOM05D005222 ORTHO05D006230 1.7e-14 83.2 63 57.1
SMO356G0192 Selaginella moellendorffii HOM05D005222 ORTHO05D006230 2.2e-14 82.8 59 59.3
Os11g0131700 Oryza sativa ssp. japonica HOM05D005222 ORTHO05D006230 4.9e-14 81.6 62 56.5
Os12g0128600 Oryza sativa ssp. japonica HOM05D005222 ORTHO05D006230 8.4e-14 80.9 62 56.5
Zm00001eb163550 Zea mays HOM05D005222 ORTHO05D006230 3.5e-12 75.5 60 53.3
HPP92_001283 Vanilla planifolia HOM05D005222 ORTHO05D006230 4.6e-12 75.1 64 54.7
Nn7g37129 Nelumbo nucifera HOM05D005222 ORTHO05D006230 1.3e-11 73.6 53 60.4
FvH4_5g07110 Fragaria vesca HOM05D005222 ORTHO05D006230 2.5e-10 69.3 70 52.9
FAN08G2230 Fragaria x ananassa HOM05D005222 ORTHO05D006230 4.0e-08 62.0 83 44.6
AagrBONN_evm.TU.Sc2ySwM_362.856 Anthoceros agrestis HOM05D005222 ORTHO05D006230 6.8e-08 61.2 38 71.1
MCO14G257 Micromonas commoda HOM05D005222 ORTHO05D006230 1.2e-07 60.5 67 46.3


User provided reference genes

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