Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0034319 Camellia sinensis var. sinensis HOM05D004438 ORTHO05D005256 6.3e-143 510.8 259 100.0
CSS0036545 Camellia sinensis var. sinensis HOM05D004438 ORTHO05D005256 9.9e-88 327.4 306 63.1
CSS0009061 Camellia sinensis var. sinensis HOM05D004438 ORTHO05D005256 4.1e-33 146.0 79 84.8
CSS0020413 Camellia sinensis var. sinensis HOM05D004438 ORTHO05D005256 3.8e-31 139.4 114 64.9
Dinv19477 Davidia involucrata HOM05D004438 ORTHO05D005256 5.5e-30 135.6 114 61.4
CsaV3_6G042320 Cucumis sativus L. HOM05D004438 ORTHO05D005256 9.4e-30 134.8 114 58.8
ClCG01G016040 Citrullus lanatus HOM05D004438 ORTHO05D005256 1.2e-29 134.4 114 58.8
Duzib187G1770 Durio zibethinus HOM05D004438 ORTHO05D005256 1.2e-29 134.4 114 58.8
Oeu027202.1 Olea europaea HOM05D004438 ORTHO05D005256 1.2e-29 134.4 114 58.8
Actinidia06107 Actinidia chinensis HOM05D004438 ORTHO05D005256 1.6e-29 134.0 114 61.4
Gorai.007G062500 Gossypium raimondii HOM05D004438 ORTHO05D005256 1.6e-29 134.0 101 61.4
Peaxi162Scf00106g00162 Petunia axillaris HOM05D004438 ORTHO05D005256 1.6e-29 134.0 114 59.6
COL.COLO4_11000 Corchorus olitorius HOM05D004438 ORTHO05D005256 2.1e-29 133.7 114 59.6
Gohir.A11G197600 Gossypium hirsutum HOM05D004438 ORTHO05D005256 2.1e-29 133.7 114 57.9
Gorai.007G245000 Gossypium raimondii HOM05D004438 ORTHO05D005256 2.1e-29 133.7 114 57.9
MD03G1238400 Malus domestica HOM05D004438 ORTHO05D005256 2.7e-29 133.3 110 60.0
PSO541G1989 Papaver somniferum HOM05D004438 ORTHO05D005256 2.7e-29 133.3 114 60.5
MELO3C007474.2 Cucumis melo HOM05D004438 ORTHO05D005256 3.6e-29 132.9 114 58.8
FvH4_1g22770 Fragaria vesca HOM05D004438 ORTHO05D005256 6.1e-29 132.1 114 58.8
FAN19G1036 Fragaria x ananassa HOM05D004438 ORTHO05D005256 6.1e-29 132.1 114 58.8
FAN23G1009 Fragaria x ananassa HOM05D004438 ORTHO05D005256 6.1e-29 132.1 114 58.8
FAN26G1829 Fragaria x ananassa HOM05D004438 ORTHO05D005256 6.1e-29 132.1 114 58.8
FAN28G0942 Fragaria x ananassa HOM05D004438 ORTHO05D005256 6.1e-29 132.1 114 58.8
Solyc04g051710.2 Solanum lycopersicum HOM05D004438 ORTHO05D005256 6.1e-29 132.1 114 58.8
Dinv42684 Davidia involucrata HOM05D004438 ORTHO05D005256 1.0e-28 131.3 114 60.5
MBI11_g03707_MAGBIO Magnolia biondii HOM05D004438 ORTHO05D005256 1.4e-28 131.0 113 57.5
Rhsim10G0149000 Rhododendron simsii HOM05D004438 ORTHO05D005256 1.4e-28 131.0 110 60.0
Sopen04g023090 Solanum pennellii HOM05D004438 ORTHO05D005256 1.4e-28 131.0 110 59.1
PGSC0003DMG400031197 Solanum tuberosum HOM05D004438 ORTHO05D005256 1.4e-28 131.0 114 57.9
CiPaw.03G133700 Carya illinoinensis HOM05D004438 ORTHO05D005256 1.8e-28 130.6 114 57.0
RcHm_v2.0_Chr2g0117091 Rosa chinensis HOM05D004438 ORTHO05D005256 1.8e-28 130.6 114 57.9
Sed0014495 Sechium edule HOM05D004438 ORTHO05D005256 1.8e-28 130.6 114 57.0
SGA_v2.0_scaffold79G25619 Striga asiatica HOM05D004438 ORTHO05D005256 1.8e-28 130.6 114 58.8
TAR625G0091 Trochodendron aralioides HOM05D004438 ORTHO05D005256 1.8e-28 130.6 114 58.8
Gohir.A11G053800 Gossypium hirsutum HOM05D004438 ORTHO05D005256 2.3e-28 130.2 112 56.2
PSO675G7198 Papaver somniferum HOM05D004438 ORTHO05D005256 2.3e-28 130.2 114 59.6
TWI53G0984 Tripterygium wilfordii HOM05D004438 ORTHO05D005256 2.3e-28 130.2 109 59.6
Gohir.D11G057300 Gossypium hirsutum HOM05D004438 ORTHO05D005256 3.0e-28 129.8 112 55.4
QL06p031963 Quercus lobata HOM05D004438 ORTHO05D005256 3.0e-28 129.8 113 56.6
SGA_v2.0_scaffold308G48110 Striga asiatica HOM05D004438 ORTHO05D005256 3.0e-28 129.8 114 58.8
MSTRG.9937 Avicennia marina HOM05D004438 ORTHO05D005256 4.0e-28 129.4 114 58.8
MD15G1340400 Malus domestica HOM05D004438 ORTHO05D005256 4.0e-28 129.4 110 59.1
Thecc.01G114400 Theobroma cacao HOM05D004438 ORTHO05D005256 4.0e-28 129.4 114 57.9
CAN.G344.10 Capsicum annuum HOM05D004438 ORTHO05D005256 5.2e-28 129.0 114 57.0
Cpa.g.sc21.8 Carica papaya HOM05D004438 ORTHO05D005256 5.2e-28 129.0 112 57.1
Gohir.D11G231900 Gossypium hirsutum HOM05D004438 ORTHO05D005256 5.2e-28 129.0 114 57.0
Phvul.L002244 Phaseolus vulgaris HOM05D004438 ORTHO05D005256 5.2e-28 129.0 109 57.8
Sed0003177 Sechium edule HOM05D004438 ORTHO05D005256 5.2e-28 129.0 114 57.9
VMungo0720G0202 Vigna mungo HOM05D004438 ORTHO05D005256 5.2e-28 129.0 109 57.8
Ah.03g137490 Amaranthus hybridus HOM05D004438 ORTHO05D005256 6.8e-28 128.6 114 57.9
CANSAT01G2942 Cannabis sativa HOM05D004438 ORTHO05D005256 6.8e-28 128.6 111 56.8
AT5G64816 Arabidopsis thaliana HOM05D004438 ORTHO05D005256 1.2e-27 127.9 113 57.5
Os03g0185600 Oryza sativa ssp. japonica HOM05D004438 ORTHO05D005256 1.2e-27 127.9 110 57.3
Haze_25054 Corylus avellana HOM05D004438 ORTHO05D005256 1.5e-27 127.5 113 56.6
Prupe.4G171500 Prunus persica HOM05D004438 ORTHO05D005256 1.5e-27 127.5 110 58.2
Prupe.6G170300 Prunus persica HOM05D004438 ORTHO05D005256 1.5e-27 127.5 114 57.9
Gohir.A10G084200 Gossypium hirsutum HOM05D004438 ORTHO05D005256 2.0e-27 127.1 110 57.3
Ah.02g126620 Amaranthus hybridus HOM05D004438 ORTHO05D005256 2.6e-27 126.7 114 56.1
AL8G42290 Arabidopsis lyrata HOM05D004438 ORTHO05D005256 2.6e-27 126.7 110 58.2
Gorai.011G114100 Gossypium raimondii HOM05D004438 ORTHO05D005256 2.6e-27 126.7 110 56.4
Cfa002762 Carpinus fangiana HOM05D004438 ORTHO05D005256 3.4e-27 126.3 110 57.3
AUR62027160 Chenopodium quinoa HOM05D004438 ORTHO05D005256 4.4e-27 125.9 108 59.3
AUR62044399 Chenopodium quinoa HOM05D004438 ORTHO05D005256 4.4e-27 125.9 108 59.3
Lalb_Chr02g0150651 Lupinus albus HOM05D004438 ORTHO05D005256 4.4e-27 125.9 112 54.5
Gohir.D10G104600 Gossypium hirsutum HOM05D004438 ORTHO05D005256 7.5e-27 125.2 110 55.5
MD15G1331400 Malus domestica HOM05D004438 ORTHO05D005256 7.5e-27 125.2 110 57.3
Carub.0008s2564 Capsella rubella HOM05D004438 ORTHO05D005256 1.3e-26 124.4 113 57.5
Glyma.01G200000 Glycine max HOM05D004438 ORTHO05D005256 1.3e-26 124.4 113 54.0
Cc10_g15830 Coffea canephora HOM05D004438 ORTHO05D005256 1.7e-26 124.0 112 56.2
CARHR278820 Cardamine hirsuta HOM05D004438 ORTHO05D005256 2.2e-26 123.6 113 56.6
Zm00001eb401580 Zea mays HOM05D004438 ORTHO05D005256 2.2e-26 123.6 111 55.9
Migut.N00230 Erythranthe guttata HOM05D004438 ORTHO05D005256 2.8e-26 123.2 114 56.1
QL01p009111 Quercus lobata HOM05D004438 ORTHO05D005256 2.8e-26 123.2 110 55.5
TAR381G0625 Trochodendron aralioides HOM05D004438 ORTHO05D005256 2.8e-26 123.2 114 56.1
A06p31610 Brassica napus HOM05D004438 ORTHO05D005256 3.7e-26 122.9 113 55.8
Glyma.10G190000 Glycine max HOM05D004438 ORTHO05D005256 3.7e-26 122.9 109 55.0
Glyma.20G200800 Glycine max HOM05D004438 ORTHO05D005256 3.7e-26 122.9 116 51.7
Medtr1g073620 Medicago truncatula HOM05D004438 ORTHO05D005256 3.7e-26 122.9 109 55.0
Psat7g208520 Pisum sativum HOM05D004438 ORTHO05D005256 3.7e-26 122.9 112 50.9
TAR625G0287 Trochodendron aralioides HOM05D004438 ORTHO05D005256 3.7e-26 122.9 113 54.9
Zm00001eb006400 Zea mays HOM05D004438 ORTHO05D005256 3.7e-26 122.9 110 56.4
BcaB02g09832 Brassica carinata HOM05D004438 ORTHO05D005256 6.3e-26 122.1 113 55.8
BcaC01g02715 Brassica carinata HOM05D004438 ORTHO05D005256 6.3e-26 122.1 113 55.8
BolC3t18395H Brassica oleracea HOM05D004438 ORTHO05D005256 6.3e-26 122.1 113 55.8
SalBow3G3218 Salvia bowleyana HOM05D004438 ORTHO05D005256 6.3e-26 122.1 110 54.5
Sp2g27890 Schrenkiella parvula HOM05D004438 ORTHO05D005256 6.3e-26 122.1 113 55.8
TPR.G28848 Trifolium pratense HOM05D004438 ORTHO05D005256 6.3e-26 122.1 109 55.0
C03p61350 Brassica napus HOM05D004438 ORTHO05D005256 8.3e-26 121.7 110 56.4
BraA06t26098Z Brassica rapa HOM05D004438 ORTHO05D005256 8.3e-26 121.7 110 56.4
HanXRQChr12g0372061 Helianthus annuus HOM05D004438 ORTHO05D005256 8.3e-26 121.7 110 56.4
Lj5g0016992 Lotus japonicus HOM05D004438 ORTHO05D005256 8.3e-26 121.7 109 55.0
THA.LOC104799304 Tarenaya hassleriana HOM05D004438 ORTHO05D005256 8.3e-26 121.7 110 56.4
Nitab4.5_0000131g0360 Nicotiana tabacum HOM05D004438 ORTHO05D005256 1.1e-25 121.3 110 54.5
Aqoxy2G01099 Aquilegia oxysepala HOM05D004438 ORTHO05D005256 1.4e-25 120.9 114 56.1
Eucgr.F02140 Eucalyptus grandis HOM05D004438 ORTHO05D005256 1.4e-25 120.9 113 53.1
SalBow2G1806 Salvia bowleyana HOM05D004438 ORTHO05D005256 1.4e-25 120.9 110 54.5
Nn5g29898 Nelumbo nucifera HOM05D004438 ORTHO05D005256 1.8e-25 120.6 113 53.1
Peaxi162Scf00979g00008 Petunia axillaris HOM05D004438 ORTHO05D005256 1.8e-25 120.6 110 54.5
Lsat_1_v5_gn_8_150501 Lactuca sativa HOM05D004438 ORTHO05D005256 2.4e-25 120.2 108 56.5
Nitab4.5_0003709g0100 Nicotiana tabacum HOM05D004438 ORTHO05D005256 2.4e-25 120.2 110 53.6
RcHm_v2.0_Chr5g0031621 Rosa chinensis HOM05D000965 ORTHO05D000842 2.4e-25 120.2 109 53.2
vmacro18638 Vaccinium macrocarpon HOM05D004438 ORTHO05D005256 3.1e-25 119.8 114 54.4
Potri.005G156400 Populus trichocarpa HOM05D004438 ORTHO05D005256 4.1e-25 119.4 111 54.1
TWI74G1039 Tripterygium wilfordii HOM05D004438 ORTHO05D005256 4.1e-25 119.4 106 54.7
Potri.002G105400 Populus trichocarpa HOM05D004438 ORTHO05D005256 5.3e-25 119.0 113 54.0
unitig_699.g19132 Utricularia gibba HOM05D004438 ORTHO05D005256 5.3e-25 119.0 113 50.4
ECA233G2293 Erigeron canadensis HOM05D004438 ORTHO05D005256 7.0e-25 118.6 112 55.4
GSVIVG01009169001 Vitis vinifera HOM05D004438 ORTHO05D005256 9.1e-25 118.2 110 54.5
FAN16G1755 Fragaria x ananassa HOM05D004438 ORTHO05D005256 1.2e-24 117.9 111 54.1
THA.LOC104819312 Tarenaya hassleriana HOM05D004438 ORTHO05D005256 1.2e-24 117.9 113 54.9
DCAR_009568 Daucus carota HOM05D004438 ORTHO05D005256 1.6e-24 117.5 110 52.7
Psat6g129880 Pisum sativum HOM05D004438 ORTHO05D005256 1.6e-24 117.5 109 50.5
Sopen00g011470 Solanum pennellii HOM05D004438 ORTHO05D005256 2.0e-24 117.1 110 52.7
Solyc04g076260.2 Solanum lycopersicum HOM05D004438 ORTHO05D005256 2.7e-24 116.7 110 53.6
Aa31LG1G17110 Aethionema arabicum HOM05D004438 ORTHO05D005256 3.5e-24 116.3 113 53.1
Nitab4.5_0000184g0290 Nicotiana tabacum HOM05D004438 ORTHO05D005256 4.5e-24 115.9 102 56.9
HPP92_015825 Vanilla planifolia HOM05D004438 ORTHO05D005256 4.5e-24 115.9 114 50.0
Atru.chr13.1020 Acer truncatum HOM05D004438 ORTHO05D005256 5.9e-24 115.5 110 51.8
CAN.G475.35 Capsicum annuum HOM05D004438 ORTHO05D005256 5.9e-24 115.5 110 53.6
DCAR_009565 Daucus carota HOM05D004438 ORTHO05D005256 1.0e-23 114.8 110 51.8
PGSC0003DMG400009364 Solanum tuberosum HOM05D004438 ORTHO05D005256 1.3e-23 114.4 110 52.7
Ciclev10002841m.g Citrus clementina HOM05D004438 ORTHO05D005256 2.2e-23 113.6 110 50.9
Manes.10G131700 Manihot esculenta HOM05D004438 ORTHO05D005256 1.5e-22 110.9 110 49.1
Sc03g0004400 Simmondsia chinensis HOM05D004438 ORTHO05D005256 1.9e-22 110.5 102 53.9
Gohir.1Z049407 Gossypium hirsutum HOM05D004438 ORTHO05D005256 3.2e-22 109.8 56 85.7
Nitab4.5_0004977g0030 Nicotiana tabacum HOM05D004438 ORTHO05D005256 7.2e-22 108.6 58 81.0
Nn1g08461 Nelumbo nucifera HOM05D004438 ORTHO05D005256 4.7e-21 105.9 101 52.5
Thhalv10005124m.g Eutrema salsugineum HOM05D004438 ORTHO05D005256 6.1e-21 105.5 57 84.2
Migut.G00404 Erythranthe guttata HOM05D004438 ORTHO05D005256 1.4e-20 104.4 82 62.2
ATR1132G028 Amborella trichopoda HOM05D004438 ORTHO05D005256 1.8e-20 104.0 113 49.6
Lalb_Chr21g0312471 Lupinus albus HOM05D004438 ORTHO05D005256 3.0e-20 103.2 105 49.5
SHI31196 Sapria himalayana HOM05D004438 ORTHO05D005256 4.0e-20 102.8 111 46.8
TWI56G0149 Tripterygium wilfordii HOM05D004438 ORTHO05D005256 4.0e-20 102.8 105 51.4
Sc23g0000680 Simmondsia chinensis HOM05D004438 ORTHO05D005256 8.8e-20 101.7 110 48.2
Nitab4.5_0004977g0040 Nicotiana tabacum HOM05D004438 ORTHO05D005256 2.0e-19 100.5 93 55.9
FvH4_3g18771 Fragaria vesca HOM05D004438 ORTHO05D005256 3.4e-19 99.8 102 50.0
Manes.02G145100 Manihot esculenta HOM05D004438 ORTHO05D005256 5.7e-19 99.0 97 51.5
EL10Ac6g13106 Beta vulgaris HOM05D004438 ORTHO05D005256 7.5e-19 98.6 93 57.0
Sabra02G0082700 Salix brachista HOM05D004438 ORTHO05D005256 7.5e-19 98.6 99 51.5
COL.COLO4_35234 Corchorus olitorius HOM05D004438 ORTHO05D005256 9.8e-19 98.2 109 45.9
Sabra05G0119900 Salix brachista HOM05D004438 ORTHO05D005256 2.2e-18 97.1 99 50.5
FAN11G0727 Fragaria x ananassa HOM05D000965 ORTHO05D000842 3.7e-18 96.3 98 50.0
SEGI_36857 Sequoiadendron giganteum HOM05D004438 ORTHO05D005256 4.8e-18 95.9 51 80.4
FAN21G3234 Fragaria x ananassa HOM05D000965 ORTHO05D000842 6.3e-18 95.5 98 49.0
arahy.Tifrunner.gnm1.ann1.7JV24P Arachis hypogaea HOM05D004438 ORTHO05D005256 7.0e-17 92.0 46 84.8
Mapoly0031s0095 Marchantia polymorpha HOM05D004438 ORTHO05D005256 1.2e-16 91.3 117 44.4
AagrBONN_evm.TU.Sc2ySwM_117.295 Anthoceros agrestis HOM05D004438 ORTHO05D005256 1.0e-15 88.2 54 63.0
Pp3c22_12110 Physcomitrium patens HOM05D004438 ORTHO05D005256 2.3e-15 87.0 50 68.0
Duzib264G0014 Durio zibethinus HOM05D004438 ORTHO05D005256 2.9e-15 86.7 88 51.1
CDE02G2078 Ceratophyllum demersum HOM05D004438 ORTHO05D005256 1.9e-14 84.0 41 87.8
AagrBONN_evm.TU.Sc2ySwM_344.1988 Anthoceros agrestis HOM05D004438 ORTHO05D005256 4.2e-14 82.8 50 62.0
SEGI_35678 Sequoiadendron giganteum HOM05D004438 ORTHO05D005256 7.2e-14 82.0 48 66.7
CSS0036861 Camellia sinensis var. sinensis HOM05D004438 ORTHO05D005256 6.1e-13 79.0 81 54.3
Pp3c19_18370 Physcomitrium patens HOM05D004438 ORTHO05D005256 8.0e-13 78.6 47 63.8
CSS0014831 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 1.8e-12 77.4 50 78.0
Oeu028520.2 Olea europaea HOM05D004438 ORTHO05D005256 2.0e-11 73.9 81 48.1
PRCOL_00001176 Prasinoderma coloniale HOM05D004438 ORTHO05D005256 5.7e-11 72.4 52 55.8
CSS0042465 Camellia sinensis var. sinensis HOM05D010331 ORTHO05D000001 2.8e-10 70.1 37 86.5
Cre07.g313800 Chlamydomonas reinhardtii HOM05D004438 ORTHO05D005256 4.9e-10 69.3 52 57.7
Rhsim08G0005900 Rhododendron simsii HOM05D004438 ORTHO05D005256 8.3e-10 68.6 89 42.7
ATR0049G041 Amborella trichopoda HOM05D004438 ORTHO05D005256 1.4e-09 67.8 66 43.9
CSS0030083 Camellia sinensis var. sinensis HOM05D010331 ORTHO05D000001 9.2e-09 65.1 52 59.6
MCO08G336 Micromonas commoda HOM05D004438 ORTHO05D005256 3.5e-08 63.2 50 52.0
CSS0039424 Camellia sinensis var. sinensis HOM05D010331 ORTHO05D000001 3.9e-07 59.7 33 81.8
CSS0050272 Camellia sinensis var. sinensis HOM05D010331 ORTHO05D000001 6.6e-07 58.9 32 84.4
CSS0030354 Camellia sinensis var. sinensis HOM05D000247 ORTHO05D000288 1.9e-06 57.4 37 67.6
CSS0004288 Camellia sinensis var. sinensis HOM05D010331 ORTHO05D000001 7.3e-06 55.5 32 81.2
CSS0028589 Camellia sinensis var. sinensis HOM05D010331 ORTHO05D000001 9.5e-06 55.1 65 50.8


User provided reference genes

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