Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0034279 Camellia sinensis var. sinensis HOM05D000347 ORTHO05D008062 2.6e-95 352.1 181 100.0
Actinidia37581 Actinidia chinensis HOM05D000347 ORTHO05D008062 4.0e-59 231.9 182 68.1
Dinv19218 Davidia involucrata HOM05D000347 ORTHO05D008062 6.3e-57 224.6 183 68.3
Thecc.01G228300 Theobroma cacao HOM05D000347 ORTHO05D008062 1.4e-56 223.4 186 66.7
GSVIVG01028561001 Vitis vinifera HOM05D000347 ORTHO05D008062 3.1e-56 222.2 189 66.7
Prupe.8G205000 Prunus persica HOM05D000347 ORTHO05D000694 4.5e-55 218.4 185 67.0
Actinidia30090 Actinidia chinensis HOM05D000347 ORTHO05D008062 1.3e-54 216.9 182 66.5
QL09p044668 Quercus lobata HOM05D000347 ORTHO05D008062 2.7e-52 209.1 186 61.8
Potri.002G240300 Populus trichocarpa HOM05D000347 ORTHO05D008062 6.1e-52 208.0 185 64.9
Hma1.2p1_0351F.1_g132820 Hydrangea macrophylla HOM05D000347 ORTHO05D008062 8.0e-52 207.6 179 64.2
RcHm_v2.0_Chr6g0285151 Rosa chinensis HOM05D000347 ORTHO05D008062 1.8e-51 206.5 187 62.6
CiPaw.04G106800 Carya illinoinensis HOM05D000347 ORTHO05D000694 8.8e-51 204.1 185 61.6
Actinidia23733 Actinidia chinensis HOM05D000347 ORTHO05D008062 8.3e-49 197.6 184 61.4
Cc01_g17250 Coffea canephora HOM05D000347 ORTHO05D008062 1.1e-48 197.2 191 63.4
FvH4_2g19360 Fragaria vesca HOM05D000347 ORTHO05D008062 1.1e-48 197.2 187 61.0
FAN24G2098 Fragaria x ananassa HOM05D000347 ORTHO05D000694 1.1e-48 197.2 187 61.0
CiPaw.03G151400 Carya illinoinensis HOM05D000347 ORTHO05D008062 1.4e-48 196.8 185 60.5
MD05G1178500 Malus domestica HOM05D000347 ORTHO05D008062 1.4e-48 196.8 184 61.4
Manes.12G042000 Manihot esculenta HOM05D000347 ORTHO05D008062 1.4e-48 196.8 190 63.2
FAN15G1475 Fragaria x ananassa HOM05D000347 ORTHO05D000694 1.8e-48 196.4 187 61.0
Migut.D00520 Erythranthe guttata HOM05D000347 ORTHO05D008062 4.1e-48 195.3 191 58.6
Rhsim13G0044000 Rhododendron simsii HOM05D000347 ORTHO05D008062 9.1e-48 194.1 181 65.7
MD10G1166700 Malus domestica HOM05D000347 ORTHO05D008062 5.9e-47 191.4 184 59.2
Eucgr.H00807 Eucalyptus grandis HOM05D000347 ORTHO05D008062 7.7e-47 191.0 187 59.4
FAN27G2014 Fragaria x ananassa HOM05D000347 ORTHO05D008062 2.5e-45 186.0 181 59.1
Glyma.08G356200 Glycine max HOM05D000347 ORTHO05D008062 1.0e-43 180.6 190 56.3
Oeu018505.1 Olea europaea HOM05D000879 ORTHO05D002043 1.0e-43 180.6 180 57.2
TWI18G0408 Tripterygium wilfordii HOM05D000347 ORTHO05D008062 1.0e-43 180.6 240 50.0
Phvul.008G123300 Phaseolus vulgaris HOM05D000347 ORTHO05D008062 1.8e-43 179.9 186 55.4
TAR636G2566 Trochodendron aralioides HOM05D000347 ORTHO05D008062 1.8e-43 179.9 195 54.9
Sabra02G0183100 Salix brachista HOM05D000347 ORTHO05D008062 4.0e-43 178.7 180 57.2
SGA_v2.0_scaffold1G00715 Striga asiatica HOM05D000347 ORTHO05D008062 5.2e-43 178.3 183 55.7
SalBow4G1846 Salvia bowleyana HOM05D000347 ORTHO05D008062 2.6e-42 176.0 178 59.6
vmacro02746 Vaccinium macrocarpon HOM05D000347 ORTHO05D008062 2.6e-42 176.0 181 62.4
Nitab4.5_0000866g0010 Nicotiana tabacum HOM05D000347 ORTHO05D008062 4.4e-42 175.3 183 56.3
Glyma.18G173300 Glycine max HOM05D000347 ORTHO05D008062 9.8e-42 174.1 189 55.0
VMungo1383G0854 Vigna mungo HOM05D000347 ORTHO05D008062 2.8e-41 172.6 186 54.8
Gohir.D11G142500 Gossypium hirsutum HOM05D000347 ORTHO05D008062 4.9e-41 171.8 190 55.3
Gorai.007G152800 Gossypium raimondii HOM05D000347 ORTHO05D008062 4.9e-41 171.8 190 55.3
PGR083G0949 Punica granatum HOM05D000347 ORTHO05D008062 8.3e-41 171.0 185 56.2
Ca_07542_v3 Cicer arietinum L. HOM05D000347 ORTHO05D008062 1.4e-40 170.2 187 52.9
Ciclev10021356m.g Citrus clementina HOM05D000347 ORTHO05D008062 1.8e-40 169.9 197 54.8
TAR365G0021 Trochodendron aralioides HOM05D000347 ORTHO05D008062 2.4e-40 169.5 187 51.3
Gohir.A11G136100 Gossypium hirsutum HOM05D000347 ORTHO05D008062 4.1e-40 168.7 185 54.6
Lj1g0023077 Lotus japonicus HOM05D000347 ORTHO05D008062 5.4e-40 168.3 185 50.3
Solyc09g061715.1 Solanum lycopersicum HOM05D000347 ORTHO05D008062 7.0e-40 167.9 185 56.8
Sopen09g024710 Solanum pennellii HOM05D000347 ORTHO05D008062 7.0e-40 167.9 185 56.8
CANSAT01G0926 Cannabis sativa HOM05D000347 ORTHO05D008062 2.0e-39 166.4 193 54.9
Medtr0027s0180 Medicago truncatula HOM05D000347 ORTHO05D008062 3.5e-39 165.6 188 54.3
MSTRG.21431 Avicennia marina HOM05D000347 ORTHO05D008062 4.5e-39 165.2 182 53.3
TAR365G1261 Trochodendron aralioides HOM05D000347 ORTHO05D008062 1.1e-37 160.6 203 47.3
Nn1g07779 Nelumbo nucifera HOM05D000347 ORTHO05D008062 1.9e-37 159.8 192 48.4
MELO3C018065.2 Cucumis melo HOM05D000347 ORTHO05D008062 7.3e-37 157.9 187 56.1
PGSC0003DMG400003422 Solanum tuberosum HOM05D000347 ORTHO05D008062 9.5e-37 157.5 179 55.3
CsaV3_3G028770 Cucumis sativus L. HOM05D000347 ORTHO05D008062 6.1e-36 154.8 187 55.1
TPR.G15284 Trifolium pratense HOM05D000347 ORTHO05D008062 1.0e-35 154.1 186 54.8
HanXRQChr01g0014681 Helianthus annuus HOM05D000347 ORTHO05D008062 1.4e-35 153.7 188 51.1
Sopen06g034940 Solanum pennellii HOM05D000347 ORTHO05D008062 3.1e-35 152.5 184 53.3
Medtr7g059080 Medicago truncatula HOM05D000347 ORTHO05D008062 5.2e-35 151.8 164 55.5
Cpa.g.sc8.175 Carica papaya HOM05D000347 ORTHO05D008062 5.8e-34 148.3 164 56.7
Aqoxy2G03776 Aquilegia oxysepala HOM05D000347 ORTHO05D008062 9.8e-34 147.5 187 48.7
Solyc06g083560.3 Solanum lycopersicum HOM05D000347 ORTHO05D008062 9.8e-34 147.5 184 51.1
PGSC0003DMG400020089 Solanum tuberosum HOM05D007853 ORTHO05D009873 1.3e-33 147.1 178 52.8
ClCG07G001810 Citrullus lanatus HOM05D006129 ORTHO05D007446 6.4e-33 144.8 182 52.2
Sed0024927 Sechium edule HOM05D000901 ORTHO05D008062 8.3e-33 144.4 189 52.4
Lsat_1_v5_gn_5_179760 Lactuca sativa HOM05D000347 ORTHO05D008062 7.8e-31 137.9 196 47.4
Lalb_Chr03g0041901 Lupinus albus HOM05D000347 ORTHO05D008062 3.9e-30 135.6 183 46.4
Psat3g142320 Pisum sativum HOM05D000347 ORTHO05D008062 6.6e-30 134.8 188 48.4
Sed0024241 Sechium edule HOM05D000347 ORTHO05D008062 7.3e-29 131.3 178 48.9
Nitab4.5_0003790g0070 Nicotiana tabacum HOM05D000347 ORTHO05D008062 1.6e-28 130.2 114 62.3
AUR62031831 Chenopodium quinoa HOM05D000347 ORTHO05D008062 3.6e-28 129.0 198 49.5
Peaxi162Scf00517g00428 Petunia axillaris HOM05D000347 ORTHO05D008062 6.8e-27 124.8 180 45.6
Gohir.D08G211800 Gossypium hirsutum HOM05D000347 ORTHO05D008062 3.4e-26 122.5 191 45.0
Gorai.004G225100 Gossypium raimondii HOM05D000347 ORTHO05D008062 4.4e-26 122.1 191 46.1
Gohir.A08G194000 Gossypium hirsutum HOM05D000347 ORTHO05D008062 1.1e-24 117.5 190 44.7
Lalb_Chr01g0022451 Lupinus albus HOM05D000347 ORTHO05D008062 1.4e-24 117.1 185 43.2
DCAR_018551 Daucus carota HOM05D000347 ORTHO05D008062 1.9e-24 116.7 183 43.7
DCAR_004713 Daucus carota HOM05D000347 ORTHO05D008062 4.1e-24 115.5 188 45.2
Atru.chr5.2056 Acer truncatum HOM05D000347 ORTHO05D008062 5.4e-24 115.2 118 54.2
Haze_24776 Corylus avellana HOM05D000347 ORTHO05D008062 7.0e-24 114.8 99 61.6
Glyma.16G094000 Glycine max HOM05D000347 ORTHO05D008062 3.5e-23 112.5 183 42.1
Peaxi162Scf02141g00004 Petunia axillaris HOM05D000347 ORTHO05D008062 4.6e-23 112.1 114 52.6
AUR62008877 Chenopodium quinoa HOM05D000347 ORTHO05D008062 1.0e-22 110.9 157 47.8
arahy.Tifrunner.gnm1.ann1.54FW37 Arachis hypogaea HOM05D000347 ORTHO05D008062 1.3e-22 110.5 199 42.2
Ah.08g214040 Amaranthus hybridus HOM05D000901 ORTHO05D008062 2.3e-22 109.8 193 39.9
arahy.Tifrunner.gnm1.ann1.W0YDFD Arachis hypogaea HOM05D000347 ORTHO05D008062 3.9e-22 109.0 197 41.1
Sc05g0002410 Simmondsia chinensis HOM05D000347 ORTHO05D008062 5.6e-21 105.1 194 39.2
Lj3g0009150 Lotus japonicus HOM05D000347 ORTHO05D008062 1.8e-19 100.1 163 41.1
Nitab4.5_0002085g0080 Nicotiana tabacum HOM05D000347 ORTHO05D008062 1.2e-18 97.4 174 40.2
Nn3g19918 Nelumbo nucifera HOM05D000347 ORTHO05D008062 2.9e-17 92.8 89 55.1
Phvul.010G019000 Phaseolus vulgaris HOM05D000347 ORTHO05D008062 3.2e-16 89.4 187 40.1
Thhalv10002691m.g Eutrema salsugineum HOM05D011699 ORTHO05D008062 1.2e-15 87.4 143 44.1
A07p07520 Brassica napus HOM05D011699 ORTHO05D008062 3.5e-15 85.9 182 38.5
BraA07t28543Z Brassica rapa HOM05D011699 ORTHO05D008062 3.5e-15 85.9 182 38.5
BcaB06g26692 Brassica carinata HOM05D011699 ORTHO05D008062 6.0e-15 85.1 149 38.9
Carub.0003s2514 Capsella rubella HOM05D011699 ORTHO05D008062 7.8e-15 84.7 153 45.1
AL3G40480 Arabidopsis lyrata HOM05D011699 ORTHO05D008062 1.0e-14 84.3 151 42.4
AT3G24750 Arabidopsis thaliana HOM05D011699 ORTHO05D008062 1.3e-14 84.0 150 40.7
THA.LOC104821644 Tarenaya hassleriana HOM05D000347 ORTHO05D008062 1.3e-14 84.0 184 37.5
VMungo0331G1006 Vigna mungo HOM05D000347 ORTHO05D008062 1.3e-14 84.0 162 37.7
BolC7t41607H Brassica oleracea HOM05D011699 ORTHO05D008062 3.0e-14 82.8 150 40.7
Sc24g0003600 Simmondsia chinensis HOM05D000347 ORTHO05D008062 3.0e-14 82.8 119 47.9
BcaC06g35749 Brassica carinata HOM05D011699 ORTHO05D008062 1.1e-13 80.9 150 40.0
C07p11290 Brassica napus HOM05D011699 ORTHO05D008062 1.1e-13 80.9 155 38.7
MBI07_g21075_MAGBIO Magnolia biondii HOM05D000347 ORTHO05D008062 1.1e-13 80.9 146 42.5
Oeu058867.1 Olea europaea HOM05D000347 ORTHO05D008062 1.9e-13 80.1 67 61.2
Sp3g22490 Schrenkiella parvula HOM05D011699 ORTHO05D008062 7.3e-13 78.2 148 37.2
Phvul.010G019300 Phaseolus vulgaris HOM05D000347 ORTHO05D008062 1.2e-12 77.4 180 35.6
Medtr0027s0200 Medicago truncatula HOM05D000347 ORTHO05D008062 3.6e-12 75.9 90 52.2
SGA_v2.0_scaffold8G04652 Striga asiatica HOM05D005470 ORTHO05D006855 3.6e-12 75.9 124 46.8
PSO017G1362 Papaver somniferum HOM05D000347 ORTHO05D008062 6.8e-11 71.6 230 34.8
PSO063G6109 Papaver somniferum HOM05D000347 ORTHO05D008062 1.9e-08 63.5 230 31.7
ECA248G1409 Erigeron canadensis HOM05D000102 ORTHO05D000138 4.2e-08 62.4 78 50.0
Zm00001eb379630 Zea mays HOM05D042818 ORTHO05D008062 9.3e-08 61.2 195 32.3
Nitab4.5_0006773g0040 Nicotiana tabacum HOM05D000347 ORTHO05D008062 4.6e-07 58.9 42 64.3
unitig_8.g3754 Utricularia gibba HOM05D004922 ORTHO05D005990 2.3e-06 56.6 162 35.2
CARHR101080 Cardamine hirsuta HOM05D011699 ORTHO05D008062 8.7e-06 54.7 125 36.8


User provided reference genes

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