Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0034260 Camellia sinensis var. sinensis HOM05D006420 ORTHO05D008009 8.8e-145 516.9 259 100.0
CSS0037657 Camellia sinensis var. sinensis HOM05D006420 ORTHO05D008009 5.7e-144 514.2 259 99.6
Actinidia05697 Actinidia chinensis HOM05D006420 ORTHO05D008009 1.1e-113 413.7 266 76.7
Dinv23938 Davidia involucrata HOM05D006420 ORTHO05D008009 1.4e-110 403.3 281 74.4
Lj9A85G78 Lonicera japonica HOM05D006420 ORTHO05D008009 1.5e-107 393.3 269 72.5
Lj9A86G16 Lonicera japonica HOM05D006420 ORTHO05D008009 1.9e-107 392.9 269 72.5
Hma1.2p1_0928F.1_g237740 Hydrangea macrophylla HOM05D006420 ORTHO05D008009 9.5e-107 390.6 265 72.8
RhsimUnG0226900 Rhododendron simsii HOM05D006420 ORTHO05D008009 1.3e-103 380.2 256 75.8
GSVIVG01000081001 Vitis vinifera HOM05D006420 ORTHO05D008009 4.1e-102 375.2 268 69.4
Hund21694 Selenicereus undatus HOM05D006420 ORTHO05D008009 3.5e-101 372.1 265 71.3
Solyc01g099130.3 Solanum lycopersicum HOM05D006420 ORTHO05D008009 3.9e-100 368.6 270 67.0
Sopen01g042690 Solanum pennellii HOM05D006420 ORTHO05D008009 3.9e-100 368.6 270 67.0
MSTRG.5100 Avicennia marina HOM05D006420 ORTHO05D008009 6.6e-100 367.9 270 66.3
PGSC0003DMG400024687 Solanum tuberosum HOM05D006420 ORTHO05D008009 8.6e-100 367.5 270 66.7
TAR636G1821 Trochodendron aralioides HOM05D006420 ORTHO05D008009 5.6e-99 364.8 284 65.8
TAR365G0270 Trochodendron aralioides HOM05D006420 ORTHO05D008009 9.5e-99 364.0 281 67.3
Aqoxy5G00493 Aquilegia oxysepala HOM05D006420 ORTHO05D008009 2.1e-98 362.8 271 65.3
Manes.08G120400 Manihot esculenta HOM05D006420 ORTHO05D008009 6.2e-98 361.3 263 65.8
Nitab4.5_0000137g0140 Nicotiana tabacum HOM05D006420 ORTHO05D008009 6.2e-98 361.3 270 65.6
Lsat_1_v5_gn_9_123421 Lactuca sativa HOM05D006420 ORTHO05D008009 1.1e-97 360.5 264 68.2
vmacro05011 Vaccinium macrocarpon HOM05D006420 ORTHO05D008009 1.8e-97 359.8 224 79.0
Gohir.A08G210900 Gossypium hirsutum HOM05D006420 ORTHO05D008009 3.1e-97 359.0 261 68.2
Gohir.D08G227700 Gossypium hirsutum HOM05D006420 ORTHO05D008009 3.1e-97 359.0 261 68.2
Gorai.004G241900 Gossypium raimondii HOM05D006420 ORTHO05D008009 3.1e-97 359.0 261 68.2
COL.COLO4_13456 Corchorus olitorius HOM05D006420 ORTHO05D008009 8.9e-97 357.5 261 68.6
Nn1g02269 Nelumbo nucifera HOM05D006420 ORTHO05D008009 1.3e-95 353.6 280 65.4
Oeu010909.1 Olea europaea HOM05D006420 ORTHO05D008009 1.3e-95 353.6 263 66.5
Nn4g26277 Nelumbo nucifera HOM05D006420 ORTHO05D008009 4.9e-95 351.7 231 75.3
Thecc.05G302400 Theobroma cacao HOM05D006420 ORTHO05D008009 4.9e-95 351.7 237 71.7
Sed0005627 Sechium edule HOM05D006420 ORTHO05D008009 3.2e-94 349.0 267 67.4
EL10Ac4g09358 Beta vulgaris HOM05D006420 ORTHO05D008009 4.2e-94 348.6 261 62.8
CAN.G1034.41 Capsicum annuum HOM05D006420 ORTHO05D008009 5.4e-94 348.2 242 68.6
AUR62000819 Chenopodium quinoa HOM05D006420 ORTHO05D008009 5.4e-94 348.2 261 64.4
PGR083G0891 Punica granatum HOM05D006420 ORTHO05D008009 7.1e-94 347.8 263 65.0
Peaxi162Scf00037g00513 Petunia axillaris HOM05D006420 ORTHO05D008009 9.2e-94 347.4 228 71.5
Duzib177G0348 Durio zibethinus HOM05D006420 ORTHO05D008009 1.2e-93 347.1 259 65.6
Cc02_g33350 Coffea canephora HOM05D006420 ORTHO05D008009 2.7e-93 345.9 227 71.8
PSO210G7816 Papaver somniferum HOM05D006420 ORTHO05D008009 4.6e-93 345.1 267 64.8
Cfa006594 Carpinus fangiana HOM05D006420 ORTHO05D008009 1.7e-92 343.2 224 73.7
AUR62005152 Chenopodium quinoa HOM05D006420 ORTHO05D008009 6.6e-92 341.3 272 62.5
CANSAT54G1557 Cannabis sativa HOM05D006420 ORTHO05D008009 1.5e-91 340.1 263 63.9
DCAR_029409 Daucus carota HOM05D006420 ORTHO05D008009 4.3e-91 338.6 224 72.8
Prupe.6G324800 Prunus persica HOM05D006420 ORTHO05D008009 9.6e-91 337.4 267 62.2
FAN14G2531 Fragaria x ananassa HOM05D006420 ORTHO05D008009 2.1e-90 336.3 269 62.5
Sc06g0003280 Simmondsia chinensis HOM05D006420 ORTHO05D008009 4.7e-90 335.1 224 73.2
CiPaw.07G020700 Carya illinoinensis HOM05D006420 ORTHO05D008009 8.1e-90 334.3 224 71.9
Glyma.20G234300 Glycine max HOM05D006420 ORTHO05D008009 8.1e-90 334.3 258 63.6
Ah.04g160290 Amaranthus hybridus HOM05D006420 ORTHO05D008009 1.1e-89 334.0 256 64.8
Psat6g150480 Pisum sativum HOM05D006420 ORTHO05D008009 2.4e-89 332.8 261 64.4
Cfa006595 Carpinus fangiana HOM05D006420 ORTHO05D008009 3.1e-89 332.4 224 71.4
Migut.N01987 Erythranthe guttata HOM05D006420 ORTHO05D008009 3.1e-89 332.4 275 61.5
Migut.N02012 Erythranthe guttata HOM05D006420 ORTHO05D008009 3.1e-89 332.4 275 61.5
Lalb_Chr21g0310681 Lupinus albus HOM05D006420 ORTHO05D008009 9.0e-89 330.9 262 63.7
MD04G1204800 Malus domestica HOM05D006420 ORTHO05D008009 9.0e-89 330.9 264 62.9
Phvul.007G179700 Phaseolus vulgaris HOM05D006420 ORTHO05D008009 9.0e-89 330.9 257 63.0
CsaV3_2G005340 Cucumis sativus L. HOM05D006420 ORTHO05D008009 1.2e-88 330.5 272 63.2
Cpa.g.sc48.61 Carica papaya HOM05D006420 ORTHO05D008009 1.5e-88 330.1 261 63.2
Ciclev10002177m.g Citrus clementina HOM05D006420 ORTHO05D008009 1.5e-88 330.1 267 64.8
HPP92_020377 Vanilla planifolia HOM05D006420 ORTHO05D008009 3.4e-88 328.9 260 63.5
MD12G1218500 Malus domestica HOM05D006420 ORTHO05D008009 5.8e-88 328.2 263 61.6
Duzib106G1877 Durio zibethinus HOM05D006420 ORTHO05D008009 9.9e-88 327.4 224 70.5
Ca_10114_v3 Cicer arietinum L. HOM05D006420 ORTHO05D008009 6.4e-87 324.7 227 69.2
Glyma.10G154000 Glycine max HOM05D006420 ORTHO05D008009 8.4e-87 324.3 261 60.9
RcHm_v2.0_Chr3g0454981 Rosa chinensis HOM05D006420 ORTHO05D008009 8.4e-87 324.3 281 59.4
arahy.Tifrunner.gnm1.ann1.GHU2GX Arachis hypogaea HOM05D006420 ORTHO05D008009 1.1e-86 323.9 227 70.5
ClCG02G015760 Citrullus lanatus HOM05D006420 ORTHO05D008009 1.1e-86 323.9 272 61.8
FAN09G3808 Fragaria x ananassa HOM05D006420 ORTHO05D008009 5.4e-86 321.6 271 59.0
FvH4_6g06020 Fragaria vesca HOM05D006420 ORTHO05D008009 9.3e-86 320.9 269 60.2
THA.LOC104820863 Tarenaya hassleriana HOM05D006420 ORTHO05D008009 9.3e-86 320.9 262 59.9
QL03p007116 Quercus lobata HOM05D006420 ORTHO05D008009 1.2e-85 320.5 267 60.7
arahy.Tifrunner.gnm1.ann1.7ESY4D Arachis hypogaea HOM05D006420 ORTHO05D008009 1.6e-85 320.1 227 69.6
TWI56G0424 Tripterygium wilfordii HOM05D006420 ORTHO05D008009 2.1e-85 319.7 270 60.7
TPR.G6113 Trifolium pratense HOM05D006420 ORTHO05D008009 6.0e-85 318.2 228 66.7
ATR0332G062 Amborella trichopoda HOM05D006420 ORTHO05D008009 1.0e-84 317.4 269 58.4
Atru.chr2.393 Acer truncatum HOM05D006420 ORTHO05D008009 1.7e-84 316.6 266 60.5
VMungo0720G1765 Vigna mungo HOM05D006420 ORTHO05D008009 5.1e-84 315.1 260 60.0
FAN05G3282 Fragaria x ananassa HOM05D006420 ORTHO05D008009 2.5e-83 312.8 270 58.5
ECA232G4325 Erigeron canadensis HOM05D006420 ORTHO05D008009 2.1e-82 309.7 222 69.8
Nitab4.5_0005541g0070 Nicotiana tabacum HOM05D006420 ORTHO05D008009 8.1e-82 307.8 270 57.8
FAN02G2504 Fragaria x ananassa HOM05D006420 ORTHO05D008009 1.1e-81 307.4 233 64.4
Lj5g0015213 Lotus japonicus HOM05D006420 ORTHO05D008009 1.1e-81 307.4 228 65.4
MBI04_g29616_MAGBIO Magnolia biondii HOM05D006420 ORTHO05D008009 1.4e-81 307.0 186 77.4
Medtr1g082950 Medicago truncatula HOM05D006420 ORTHO05D008009 1.4e-81 307.0 227 65.2
FAN05G1000 Fragaria x ananassa HOM05D006420 ORTHO05D008009 4.0e-81 305.4 288 55.2
A03p68650 Brassica napus HOM05D006420 ORTHO05D008009 1.2e-80 303.9 236 61.0
BraSC39t46193Z Brassica rapa HOM05D006420 ORTHO05D008009 1.2e-80 303.9 236 61.0
Thhalv10023646m.g Eutrema salsugineum HOM05D006420 ORTHO05D008009 1.3e-79 300.4 257 57.2
Aa31LG2G11700 Aethionema arabicum HOM05D006774 ORTHO05D008411 2.9e-79 299.3 260 56.9
BcaC06g31763 Brassica carinata HOM05D006420 ORTHO05D008009 4.9e-79 298.5 262 56.1
HanXRQChr16g0524621 Helianthus annuus HOM05D006420 ORTHO05D008009 1.4e-78 297.0 218 67.0
Haze_04190 Corylus avellana HOM05D006420 ORTHO05D008009 9.3e-78 294.3 323 50.2
Potri.013G021600 Populus trichocarpa HOM05D006420 ORTHO05D008009 2.7e-77 292.7 219 66.7
BcaC02g10755 Brassica carinata HOM05D006420 ORTHO05D008009 6.0e-77 291.6 260 55.0
C04p25420 Brassica napus HOM05D006420 ORTHO05D008009 6.0e-77 291.6 260 55.0
BolC4t24060H Brassica oleracea HOM05D006420 ORTHO05D008009 6.0e-77 291.6 260 55.0
CARHR287540 Cardamine hirsuta HOM05D006420 ORTHO05D008009 3.3e-75 285.8 221 63.3
SpUn0004_0090 Schrenkiella parvula HOM05D006420 ORTHO05D008009 9.6e-75 284.3 221 62.4
Carub.0002s0818 Capsella rubella HOM05D006420 ORTHO05D008009 2.4e-73 279.6 220 61.8
Zm00001eb054020 Zea mays HOM05D006420 ORTHO05D008009 3.1e-73 279.3 228 57.9
AL1G65580 Arabidopsis lyrata HOM05D006420 ORTHO05D008009 6.9e-73 278.1 221 61.5
SGA_v2.0_scaffold81G26063 Striga asiatica HOM05D006420 ORTHO05D000105 9.0e-73 277.7 470 38.9
Sabra13G0024000 Salix brachista HOM05D006420 ORTHO05D008009 3.4e-72 275.8 219 62.6
AT1G55000 Arabidopsis thaliana HOM05D006420 ORTHO05D008009 7.6e-72 274.6 220 60.0
MELO3C004253.2 Cucumis melo HOM05D000208 ORTHO05D000130 2.1e-69 266.5 219 63.0
Os03g0699600 Oryza sativa ssp. japonica HOM05D006420 ORTHO05D008009 1.9e-67 260.0 208 57.7
Pp3c16_5370 Physcomitrium patens HOM05D006420 ORTHO05D008009 7.4e-59 231.5 210 56.2
AagrBONN_evm.TU.Sc2ySwM_368.542 Anthoceros agrestis HOM05D006420 ORTHO05D008009 1.8e-52 210.3 214 48.1
CDE02G2742 Ceratophyllum demersum HOM05D006420 ORTHO05D008009 1.3e-50 204.1 164 61.6
Rhsim07G0185100 Rhododendron simsii HOM05D006420 ORTHO05D008009 1.3e-50 204.1 125 82.4
SMO356G0643 Selaginella moellendorffii HOM05D006420 ORTHO05D008009 1.7e-47 193.7 208 46.2
Potri.005G032100 Populus trichocarpa HOM05D006420 ORTHO05D008009 1.4e-44 184.1 155 58.7
MD10G1167700 Malus domestica HOM05D006420 ORTHO05D008009 1.2e-40 171.0 117 68.4
QL03p007970 Quercus lobata HOM05D006420 ORTHO05D008009 2.5e-38 163.3 115 69.6
QL03p007144 Quercus lobata HOM05D006420 ORTHO05D008009 2.7e-37 159.8 116 69.0
vmacro23281 Vaccinium macrocarpon HOM05D006420 ORTHO05D008009 3.6e-37 159.5 99 75.8
Eucgr.B01949 Eucalyptus grandis HOM05D006420 ORTHO05D008009 1.8e-36 157.1 111 65.8
Eucgr.B01859 Eucalyptus grandis HOM05D006420 ORTHO05D008009 4.4e-35 152.5 107 65.4
Eucgr.B01946 Eucalyptus grandis HOM05D006420 ORTHO05D008009 7.4e-35 151.8 104 67.3
Sabra05G0034600 Salix brachista HOM05D006420 ORTHO05D008009 4.0e-28 129.4 134 50.0
SEGI_28170 Sequoiadendron giganteum HOM05D006420 ORTHO05D008009 5.9e-24 115.5 83 62.7
Cre16.g667100 Chlamydomonas reinhardtii HOM05D006420 ORTHO05D008009 2.5e-22 110.2 231 29.4
vmacro23282 Vaccinium macrocarpon HOM05D006420 ORTHO05D008009 2.4e-17 93.6 104 54.8
QL03p007977 Quercus lobata HOM05D006420 ORTHO05D008009 2.6e-11 73.6 76 46.1
QL03p007137 Quercus lobata HOM05D006420 ORTHO05D008009 9.8e-11 71.6 67 50.7
GSVIVG01012047001 Vitis vinifera HOM05D002624 ORTHO05D002796 1.6e-08 64.3 87 40.2
Thhalv10024156m.g Eutrema salsugineum HOM05D006420 ORTHO05D008009 1.3e-07 61.2 84 39.3


User provided reference genes

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