Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0021218 Camellia sinensis var. sinensis HOM05D007620 ORTHO05D009568 1.5e-104 384.4 585 100.0
CSS0034254 Camellia sinensis var. sinensis HOM05D007620 ORTHO05D009568 1.5e-104 384.4 585 100.0
CSS0013452 Camellia sinensis var. sinensis HOM05D007620 ORTHO05D009568 3.2e-102 376.7 585 99.3
Hma1.2p1_1512F.1_g287900 Hydrangea macrophylla HOM05D007620 ORTHO05D009568 4.0e-68 263.5 172 76.7
Dinv24674 Davidia involucrata HOM05D007620 ORTHO05D009568 3.1e-52 210.7 167 65.9
Thecc.05G270800 Theobroma cacao HOM05D007620 ORTHO05D009568 8.9e-52 209.1 176 60.8
PSO210G6557 Papaver somniferum HOM05D007620 ORTHO05D009568 1.5e-51 208.4 173 60.7
TAR362G1297 Trochodendron aralioides HOM05D007620 ORTHO05D009568 2.6e-51 207.6 172 61.6
QL03p030456 Quercus lobata HOM05D007620 ORTHO05D009568 4.4e-51 206.8 174 63.2
Haze_04424 Corylus avellana HOM05D007620 ORTHO05D009568 3.7e-50 203.8 173 61.3
CSS0031974 Camellia sinensis var. sinensis HOM05D007620 ORTHO05D009568 9.2e-49 199.1 173 61.8
Gohir.D11G257601 Gossypium hirsutum HOM05D007620 ORTHO05D009568 9.2e-49 199.1 175 60.0
Gorai.007G275900 Gossypium raimondii HOM05D007620 ORTHO05D009568 9.2e-49 199.1 175 60.0
Duzib177G1032 Durio zibethinus HOM05D007620 ORTHO05D009568 1.6e-48 198.4 173 56.6
Atru.chr2.986 Acer truncatum HOM05D007620 ORTHO05D009568 2.3e-47 194.5 177 53.7
Lj2C43T7 Lonicera japonica HOM05D007620 ORTHO05D009568 1.9e-46 191.4 174 58.6
Lsat_1_v5_gn_8_24880 Lactuca sativa HOM05D007620 ORTHO05D009568 2.1e-45 188.0 170 55.9
Nn1g02811 Nelumbo nucifera HOM05D007620 ORTHO05D009568 2.8e-45 187.6 171 59.6
FAN14G2205 Fragaria x ananassa HOM05D004964 ORTHO05D005918 4.7e-45 186.8 176 54.5
GSVIVG01023503001 Vitis vinifera HOM05D007620 ORTHO05D009568 2.3e-44 184.5 172 58.1
EL10Ac4g09018 Beta vulgaris HOM05D007620 ORTHO05D009568 8.9e-44 182.6 172 50.6
Lj2C43T8 Lonicera japonica HOM05D007620 ORTHO05D009568 2.6e-43 181.0 172 54.7
Oeu026591.1 Olea europaea HOM05D007620 ORTHO05D009568 2.6e-43 181.0 169 53.8
ClCG03G009720 Citrullus lanatus HOM05D007620 ORTHO05D009568 4.9e-42 176.8 168 56.0
Cc02_g08810 Coffea canephora HOM05D007620 ORTHO05D009568 1.1e-41 175.6 171 53.2
MELO3C010128.2 Cucumis melo HOM05D007620 ORTHO05D009568 1.2e-40 172.2 169 56.2
THA.LOC104801727 Tarenaya hassleriana HOM05D007620 ORTHO05D009568 2.1e-40 171.4 181 50.3
CsaV3_1G045110 Cucumis sativus L. HOM05D007620 ORTHO05D009568 4.6e-40 170.2 169 56.2
Sc09g0004220 Simmondsia chinensis HOM05D007620 ORTHO05D009568 3.9e-39 167.2 172 48.8
Cfa006355 Carpinus fangiana HOM05D007620 ORTHO05D009568 5.1e-39 166.8 173 52.6
MD04G1230300 Malus domestica HOM05D007620 ORTHO05D009568 6.6e-39 166.4 138 58.7
Aqoxy5G00210 Aquilegia oxysepala HOM05D007620 ORTHO05D009568 5.6e-38 163.3 175 53.7
CDE04G2606 Ceratophyllum demersum HOM05D007620 ORTHO05D009568 9.5e-38 162.5 170 52.4
Ciclev10019446m.g Citrus clementina HOM05D007620 ORTHO05D009568 1.6e-37 161.8 174 50.6
Psat0s1841g0080 Pisum sativum HOM05D007620 ORTHO05D009568 2.8e-37 161.0 178 48.9
Gohir.A11G247300 Gossypium hirsutum HOM05D007620 ORTHO05D009568 8.1e-37 159.5 99 71.7
CANSAT21G0311 Cannabis sativa HOM05D007620 ORTHO05D009568 1.4e-36 158.7 143 53.8
Sed0010835 Sechium edule HOM05D007620 ORTHO05D009568 1.4e-36 158.7 168 51.2
DCAR_023086 Daucus carota HOM05D007620 ORTHO05D009568 2.3e-36 157.9 172 51.2
Solyc04g010060.2 Solanum lycopersicum HOM05D007620 ORTHO05D009568 5.2e-36 156.8 162 49.4
Migut.F00879 Erythranthe guttata HOM05D007620 ORTHO05D009568 6.8e-36 156.4 184 47.8
Glyma.20G222800 Glycine max HOM05D007620 ORTHO05D009568 9.9e-35 152.5 184 46.7
Potri.019G019300 Populus trichocarpa HOM05D007620 ORTHO05D009568 1.3e-34 152.1 175 46.9
Phvul.008G151824 Phaseolus vulgaris HOM05D007620 ORTHO05D009568 1.7e-34 151.8 181 46.4
RcHm_v2.0_Chr3g0449651 Rosa chinensis HOM05D007620 ORTHO05D009568 2.2e-34 151.4 178 47.2
VMungo0720G2663 Vigna mungo HOM05D007620 ORTHO05D009568 8.3e-34 149.4 175 46.9
Glyma.10G166400 Glycine max HOM05D007620 ORTHO05D009568 1.1e-33 149.1 176 48.3
FAN05G4025 Fragaria x ananassa HOM05D004964 ORTHO05D005918 1.9e-33 148.3 176 46.0
FAN05G4826 Fragaria x ananassa HOM05D004964 ORTHO05D005918 1.9e-33 148.3 176 46.0
C05p62520 Brassica napus HOM05D007620 ORTHO05D009568 4.1e-33 147.1 148 51.4
FvH4_6g01920 Fragaria vesca HOM05D007620 ORTHO05D009568 4.1e-33 147.1 176 46.0
BolC5t34907H Brassica oleracea HOM05D007620 ORTHO05D009568 1.6e-32 145.2 148 50.7
Manes.08G053900 Manihot esculenta HOM05D007620 ORTHO05D009568 1.6e-32 145.2 172 45.3
ATR0736G141 Amborella trichopoda HOM05D007620 ORTHO05D009568 2.1e-32 144.8 108 64.8
Sabra13G0043000 Salix brachista HOM05D007620 ORTHO05D009568 2.1e-32 144.8 175 47.4
Potri.013G047000 Populus trichocarpa HOM05D007620 ORTHO05D009568 2.7e-32 144.4 175 46.9
A05p42800 Brassica napus HOM05D007620 ORTHO05D009568 3.5e-32 144.1 148 51.4
BraA05t22972Z Brassica rapa HOM05D007620 ORTHO05D009568 3.5e-32 144.1 148 51.4
FAN02G1272 Fragaria x ananassa HOM05D004964 ORTHO05D005918 3.5e-32 144.1 176 44.9
Psat6g139880 Pisum sativum HOM05D007620 ORTHO05D009568 1.3e-31 142.1 221 40.7
COL.COLO4_15485 Corchorus olitorius HOM05D007620 ORTHO05D009568 2.3e-31 141.4 97 64.9
SGA_v2.0_scaffold13G06478 Striga asiatica HOM05D007620 ORTHO05D009568 1.1e-30 139.0 149 50.3
PGR004G2089 Punica granatum HOM05D007620 ORTHO05D009568 9.6e-30 136.0 171 43.9
MD12G1247400 Malus domestica HOM05D007620 ORTHO05D009568 2.0e-27 128.3 154 46.8
AUR62040929 Chenopodium quinoa HOM05D007620 ORTHO05D009568 3.4e-27 127.5 136 45.6
AUR62004839 Chenopodium quinoa HOM05D007620 ORTHO05D009568 4.4e-27 127.1 137 45.3
Peaxi162Scf00528g00227 Petunia axillaris HOM05D007620 ORTHO05D009568 7.6e-27 126.3 167 44.3
Ca_09448_v3 Cicer arietinum L. HOM05D007620 ORTHO05D009568 1.7e-26 125.2 180 40.0
Lalb_Chr06g0168291 Lupinus albus HOM05D007620 ORTHO05D009568 3.8e-26 124.0 140 50.0
Lalb_Chr21g0311191 Lupinus albus HOM05D007620 ORTHO05D009568 4.2e-25 120.6 172 40.7
Eucgr.H04228 Eucalyptus grandis HOM05D007620 ORTHO05D009568 9.3e-25 119.4 174 42.0
MD12G1247200 Malus domestica HOM05D007620 ORTHO05D009568 9.3e-25 119.4 99 59.6
PGSC0003DMG400011475 Solanum tuberosum HOM05D007620 ORTHO05D009568 1.6e-24 118.6 168 43.5
ECA233G5729 Erigeron canadensis HOM05D007620 ORTHO05D009568 2.1e-24 118.2 73 71.2
HPP92_005407 Vanilla planifolia HOM05D007620 ORTHO05D009568 1.0e-23 115.9 148 43.2
CAN.G358.141 Capsicum annuum HOM05D007620 ORTHO05D009568 3.0e-23 114.4 175 42.3
Ah.06g191910 Amaranthus hybridus HOM05D007620 ORTHO05D009568 5.1e-23 113.6 140 43.6
Lj5g0020911 Lotus japonicus HOM05D007620 ORTHO05D009568 4.3e-22 110.5 74 70.3
SalBow6G2000 Salvia bowleyana HOM05D007620 ORTHO05D009568 4.3e-22 110.5 74 64.9
Sp3g03610 Schrenkiella parvula HOM05D007620 ORTHO05D009568 1.3e-21 109.0 150 40.7
Medtr1g080110 Medicago truncatula HOM05D007620 ORTHO05D009568 2.4e-20 104.8 81 64.2
Aa31LG5G15170 Aethionema arabicum HOM05D007620 ORTHO05D009568 1.2e-19 102.4 150 38.0
Lj1g0023548 Lotus japonicus HOM05D007620 ORTHO05D009568 1.2e-19 102.4 139 43.9
Psat0s1841g0040 Pisum sativum HOM05D007620 ORTHO05D009568 2.9e-18 97.8 218 32.6
Carub.0003s0393 Capsella rubella HOM05D007620 ORTHO05D009568 3.8e-18 97.4 148 37.8
AL3G14890 Arabidopsis lyrata HOM05D007620 ORTHO05D009568 4.9e-18 97.1 156 40.4
AT3G04760 Arabidopsis thaliana HOM05D007620 ORTHO05D009568 1.4e-17 95.5 116 44.0
Glyma.03G251200 Glycine max HOM05D007620 ORTHO05D009568 1.6e-16 92.0 112 48.2
CARHR079010 Cardamine hirsuta HOM05D007620 ORTHO05D009568 3.5e-16 90.9 109 43.1
TPR.G22332 Trifolium pratense HOM05D007620 ORTHO05D009568 2.3e-15 88.2 146 39.0
PGR004G1481 Punica granatum HOM05D007620 ORTHO05D009568 3.9e-15 87.4 67 59.7
Prupe.6G350200 Prunus persica HOM05D007620 ORTHO05D009568 2.8e-13 81.3 46 76.1
COL.COLO4_15482 Corchorus olitorius HOM05D007620 ORTHO05D009568 2.0e-11 75.1 46 73.9
Thhalv10022408m.g Eutrema salsugineum HOM05D007620 ORTHO05D009568 7.6e-11 73.2 44 72.7
Nitab4.5_0006737g0010 Nicotiana tabacum HOM05D007620 ORTHO05D009568 9.9e-11 72.8 43 72.1
CDE01G0171 Ceratophyllum demersum HOM05D007620 ORTHO05D009568 1.3e-10 72.4 92 41.3
Sopen04g005200 Solanum pennellii HOM05D007620 ORTHO05D009568 1.7e-10 72.0 43 69.8
Ca_05489_v3 Cicer arietinum L. HOM05D006739 ORTHO05D008402 2.9e-10 71.2 92 45.7
Ca_29619_v3 Cicer arietinum L. HOM05D006739 ORTHO05D008402 2.9e-10 71.2 92 45.7
Nitab4.5_0003780g0130 Nicotiana tabacum HOM05D007620 ORTHO05D009568 6.4e-10 70.1 43 69.8
Hund26855 Selenicereus undatus HOM05D006739 ORTHO05D008402 1.1e-09 69.3 86 44.2
Actinidia10267 Actinidia chinensis HOM05D006739 ORTHO05D008402 1.0e-07 62.8 101 42.6
CAN.G843.18 Capsicum annuum HOM05D005764 ORTHO05D006600 1.3e-07 62.4 93 36.6
Prupe.8G196100 Prunus persica HOM05D008810 ORTHO05D010971 1.1e-06 59.3 97 29.9
MD10G1157300 Malus domestica HOM05D008810 ORTHO05D010971 4.3e-06 57.4 96 29.2
Ciclev10028053m.g Citrus clementina HOM05D000162 ORTHO05D000090 5.6e-06 57.0 120 34.2
MSTRG.21866 Avicennia marina HOM05D000424 ORTHO05D000355 7.4e-06 56.6 99 28.3
CARHR144310 Cardamine hirsuta HOM05D008835 ORTHO05D011094 7.4e-06 56.6 80 35.0


User provided reference genes

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