Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0034235 Camellia sinensis var. sinensis HOM05D000207 ORTHO05D022125 5.9e-52 207.2 103 100.0
CSS0000263 Camellia sinensis var. sinensis HOM05D000207 ORTHO05D022125 3.8e-51 204.5 103 99.0
CSS0005982 Camellia sinensis var. sinensis HOM05D000207 ORTHO05D022125 3.8e-51 204.5 103 99.0
CSS0003955 Camellia sinensis var. sinensis HOM05D000207 ORTHO05D022125 3.3e-50 201.4 103 97.1
CSS0016400 Camellia sinensis var. sinensis HOM05D000207 ORTHO05D022125 9.5e-50 199.9 103 97.1
CSS0030375 Camellia sinensis var. sinensis HOM05D000207 ORTHO05D004473 8.6e-35 150.2 114 72.8
Glyma.20G190000 Glycine max HOM05D000207 ORTHO05D004473 1.9e-34 149.1 114 69.3
Aa31LG11G5380 Aethionema arabicum HOM05D000207 ORTHO05D004473 2.5e-34 148.7 114 70.2
Aa31LG3G3390 Aethionema arabicum HOM05D000207 ORTHO05D004473 2.5e-34 148.7 114 70.2
AL3G21960 Arabidopsis lyrata HOM05D000207 ORTHO05D004473 2.5e-34 148.7 114 70.2
AT5G04510 Arabidopsis thaliana HOM05D000207 ORTHO05D004473 2.5e-34 148.7 114 70.2
Thhalv10020612m.g Eutrema salsugineum HOM05D000207 ORTHO05D004473 2.5e-34 148.7 114 70.2
CARHR085060 Cardamine hirsuta HOM05D000207 ORTHO05D004473 3.3e-34 148.3 114 70.2
FAN06G1510 Fragaria x ananassa HOM05D000055 ORTHO05D004473 3.3e-34 148.3 115 70.4
Lalb_Chr06g0170081 Lupinus albus HOM05D000207 ORTHO05D004473 3.3e-34 148.3 114 70.2
Atru.chr12.932 Acer truncatum HOM05D000207 ORTHO05D004473 4.3e-34 147.9 114 70.2
AT3G10540 Arabidopsis thaliana HOM05D000207 ORTHO05D004473 4.3e-34 147.9 114 70.2
A01p41690 Brassica napus HOM05D005033 ORTHO05D004473 4.3e-34 147.9 114 70.2
A05p38630 Brassica napus HOM05D005033 ORTHO05D004473 4.3e-34 147.9 114 70.2
C05p57510 Brassica napus HOM05D005033 ORTHO05D004473 4.3e-34 147.9 114 70.2
BolC5t34408H Brassica oleracea HOM05D005033 ORTHO05D004473 4.3e-34 147.9 114 70.2
BraA01t04243Z Brassica rapa HOM05D000207 ORTHO05D004473 4.3e-34 147.9 114 70.2
BraA05t22653Z Brassica rapa HOM05D000207 ORTHO05D004473 4.3e-34 147.9 114 70.2
Duzib114G0299 Durio zibethinus HOM05D000207 ORTHO05D004473 4.3e-34 147.9 114 70.2
Duzib128G1411 Durio zibethinus HOM05D000207 ORTHO05D004473 4.3e-34 147.9 114 70.2
FvH4_7g18280 Fragaria vesca HOM05D000207 ORTHO05D004473 4.3e-34 147.9 114 70.2
FAN06G3011 Fragaria x ananassa HOM05D000207 ORTHO05D004473 4.3e-34 147.9 114 70.2
Lj5g0004677 Lotus japonicus HOM05D000207 ORTHO05D004473 4.3e-34 147.9 114 68.4
Phvul.007G144600 Phaseolus vulgaris HOM05D000207 ORTHO05D004473 4.3e-34 147.9 114 68.4
RcHm_v2.0_Chr1g0361861 Rosa chinensis HOM05D000207 ORTHO05D004473 4.3e-34 147.9 114 70.2
Sabra10G0180600 Salix brachista HOM05D000207 ORTHO05D004473 4.3e-34 147.9 114 71.9
Sp3g08820 Schrenkiella parvula HOM05D000207 ORTHO05D004473 4.3e-34 147.9 114 70.2
TWI38G1628 Tripterygium wilfordii HOM05D000207 ORTHO05D004473 4.3e-34 147.9 114 70.2
BcaB04g21234 Brassica carinata HOM05D000207 ORTHO05D004473 5.6e-34 147.5 114 69.3
Cfa011202 Carpinus fangiana HOM05D000207 ORTHO05D004473 5.6e-34 147.5 114 70.2
Glyma.10G200600 Glycine max HOM05D000207 ORTHO05D004473 5.6e-34 147.5 114 68.4
Gohir.A01G129100 Gossypium hirsutum HOM05D000207 ORTHO05D004473 5.6e-34 147.5 114 70.2
Gohir.D01G118700 Gossypium hirsutum HOM05D000207 ORTHO05D004473 5.6e-34 147.5 114 70.2
Medtr1g090917 Medicago truncatula HOM05D000207 ORTHO05D004473 5.6e-34 147.5 114 68.4
Psat6g174800 Pisum sativum HOM05D000207 ORTHO05D004473 5.6e-34 147.5 114 68.4
Carub.0003s0978 Capsella rubella HOM05D000207 ORTHO05D004473 7.3e-34 147.1 114 69.3
Carub.0006s0345 Capsella rubella HOM05D000207 ORTHO05D004473 7.3e-34 147.1 114 69.3
CAN.G135.49 Capsicum annuum HOM05D000207 ORTHO05D004473 7.3e-34 147.1 114 69.3
CARHR208760 Cardamine hirsuta HOM05D000207 ORTHO05D004473 7.3e-34 147.1 114 69.3
Ca_10467_v3 Cicer arietinum L. HOM05D000207 ORTHO05D004473 7.3e-34 147.1 114 68.4
Thhalv10013385m.g Eutrema salsugineum HOM05D000207 ORTHO05D004473 7.3e-34 147.1 114 69.3
Nitab4.5_0000593g0180 Nicotiana tabacum HOM05D000207 ORTHO05D004473 7.3e-34 147.1 114 69.3
Peaxi162Scf00253g00141 Petunia axillaris HOM05D000207 ORTHO05D004473 7.3e-34 147.1 114 69.3
Sp6g38240 Schrenkiella parvula HOM05D000207 ORTHO05D004473 7.3e-34 147.1 114 69.3
Solyc11g007760.2 Solanum lycopersicum HOM05D000207 ORTHO05D004473 7.3e-34 147.1 114 69.3
Sopen11g003620 Solanum pennellii HOM05D000207 ORTHO05D004473 7.3e-34 147.1 114 69.3
THA.LOC104816450 Tarenaya hassleriana HOM05D000207 ORTHO05D004473 7.3e-34 147.1 114 69.3
BolC1t05385H Brassica oleracea HOM05D000207 ORTHO05D004473 9.5e-34 146.7 114 70.2
Oeu047513.2 Olea europaea HOM05D000207 ORTHO05D004473 9.5e-34 146.7 114 69.3
Potri.010G232800 Populus trichocarpa HOM05D000207 ORTHO05D004473 9.5e-34 146.7 114 71.1
Thecc.10G093700 Theobroma cacao HOM05D000207 ORTHO05D004473 9.5e-34 146.7 114 69.3
VMungo0720G2759 Vigna mungo HOM05D000207 ORTHO05D004473 9.5e-34 146.7 114 67.5
A10p31580 Brassica napus HOM05D000207 ORTHO05D004473 1.2e-33 146.4 114 68.4
C09p72250 Brassica napus HOM05D000207 ORTHO05D004473 1.2e-33 146.4 114 68.4
BolC9t59969H Brassica oleracea HOM05D000207 ORTHO05D004473 1.2e-33 146.4 114 68.4
BraA10t45204Z Brassica rapa HOM05D000207 ORTHO05D004473 1.2e-33 146.4 114 68.4
CSS0024824 Camellia sinensis var. sinensis HOM05D000207 ORTHO05D004473 1.2e-33 146.4 114 69.3
CSS0035486 Camellia sinensis var. sinensis HOM05D000207 ORTHO05D004473 1.2e-33 146.4 114 69.3
CAN.G316.5 Capsicum annuum HOM05D000207 ORTHO05D004473 1.2e-33 146.4 114 70.2
Cc02_g10410 Coffea canephora HOM05D000207 ORTHO05D004473 1.2e-33 146.4 114 69.3
QL04p040407 Quercus lobata HOM05D000207 ORTHO05D004473 1.2e-33 146.4 114 68.4
vmacro07211 Vaccinium macrocarpon HOM05D000207 ORTHO05D004473 1.2e-33 146.4 114 69.3
Ciclev10031678m.g Citrus clementina HOM05D000207 ORTHO05D004473 1.6e-33 146.0 114 69.3
Gorai.002G144800 Gossypium raimondii HOM05D000207 ORTHO05D004473 1.6e-33 146.0 114 69.3
Psat0s2832g0040 Pisum sativum HOM05D000207 ORTHO05D004473 1.6e-33 146.0 114 67.5
PGSC0003DMG402027355 Solanum tuberosum HOM05D000207 ORTHO05D004473 1.6e-33 146.0 114 69.3
TAR633G0321 Trochodendron aralioides HOM05D001933 ORTHO05D004473 1.6e-33 146.0 114 70.2
BcaC05g29451 Brassica carinata HOM05D000207 ORTHO05D004473 2.1e-33 145.6 114 69.3
BcaC05g29453 Brassica carinata HOM05D005033 ORTHO05D004473 2.1e-33 145.6 114 69.3
CANSAT56G2199 Cannabis sativa HOM05D000207 ORTHO05D004473 2.1e-33 145.6 114 70.2
Eucgr.J01029 Eucalyptus grandis HOM05D000207 ORTHO05D004473 2.1e-33 145.6 114 69.3
MD01G1098600 Malus domestica HOM05D000207 ORTHO05D004473 2.1e-33 145.6 114 69.3
Nitab4.5_0001016g0070 Nicotiana tabacum HOM05D000207 ORTHO05D004473 2.1e-33 145.6 114 67.5
Nitab4.5_0003408g0150 Nicotiana tabacum HOM05D000207 ORTHO05D004473 2.1e-33 145.6 114 68.4
Prupe.2G204000 Prunus persica HOM05D000207 ORTHO05D004473 2.1e-33 145.6 114 69.3
Sc20g0001400 Simmondsia chinensis HOM05D000207 ORTHO05D004473 2.1e-33 145.6 114 69.3
CiPaw.14G027400 Carya illinoinensis HOM05D000207 ORTHO05D004473 2.8e-33 145.2 114 69.3
FAN01G1531 Fragaria x ananassa HOM05D000207 ORTHO05D004473 2.8e-33 145.2 114 69.3
FAN01G2015 Fragaria x ananassa HOM05D000207 ORTHO05D004473 2.8e-33 145.2 114 69.3
FAN10G1984 Fragaria x ananassa HOM05D000207 ORTHO05D004473 2.8e-33 145.2 114 69.3
Lalb_Chr19g0129301 Lupinus albus HOM05D000207 ORTHO05D004473 2.8e-33 145.2 114 68.4
Manes.10G054000 Manihot esculenta HOM05D000207 ORTHO05D004473 2.8e-33 145.2 114 67.5
Nn2g13951 Nelumbo nucifera HOM05D000207 ORTHO05D004473 2.8e-33 145.2 114 69.3
Solyc03g071750.3 Solanum lycopersicum HOM05D000207 ORTHO05D004473 2.8e-33 145.2 114 69.3
Sopen03g020030 Solanum pennellii HOM05D000207 ORTHO05D004473 2.8e-33 145.2 114 69.3
PGSC0003DMG400016913 Solanum tuberosum HOM05D000207 ORTHO05D004473 2.8e-33 145.2 114 69.3
TPR.G21921 Trifolium pratense HOM05D000207 ORTHO05D004473 2.8e-33 145.2 114 66.7
AL6G14150 Arabidopsis lyrata HOM05D000207 ORTHO05D004473 3.6e-33 144.8 114 68.4
EL10As9g23947 Beta vulgaris HOM05D000207 ORTHO05D004473 3.6e-33 144.8 114 68.4
AUR62043367 Chenopodium quinoa HOM05D000207 ORTHO05D004473 3.6e-33 144.8 114 68.4
Hma1.2p1_0361F.1_g135950 Hydrangea macrophylla HOM05D000207 ORTHO05D004473 3.6e-33 144.8 114 68.4
Potri.008G028800 Populus trichocarpa HOM05D000207 ORTHO05D004473 3.6e-33 144.8 114 68.4
Rhsim03G0110400 Rhododendron simsii HOM05D000207 ORTHO05D004473 3.6e-33 144.8 114 68.4
Sed0021073 Sechium edule HOM05D000207 ORTHO05D004473 3.6e-33 144.8 114 68.4
SGA_v2.0_scaffold13G06467 Striga asiatica HOM05D000207 ORTHO05D004473 3.6e-33 144.8 114 68.4
Actinidia06711 Actinidia chinensis HOM05D000207 ORTHO05D004473 4.7e-33 144.4 114 68.4
Actinidia18562 Actinidia chinensis HOM05D000207 ORTHO05D004473 4.7e-33 144.4 114 68.4
ClCG05G021500 Citrullus lanatus HOM05D000207 ORTHO05D004473 4.7e-33 144.4 114 68.4
Haze_02644 Corylus avellana HOM05D000207 ORTHO05D004473 4.7e-33 144.4 124 65.3
Migut.F00925 Erythranthe guttata HOM05D000207 ORTHO05D004473 4.7e-33 144.4 114 68.4
MD07G1165300 Malus domestica HOM05D000207 ORTHO05D004473 4.7e-33 144.4 114 69.3
Peaxi162Scf00398g00725 Petunia axillaris HOM05D000207 ORTHO05D004473 4.7e-33 144.4 119 65.5
Psat0s1617g0040 Pisum sativum HOM05D000207 ORTHO05D004473 4.7e-33 144.4 114 66.7
GSVIVG01034673001 Vitis vinifera HOM05D000207 ORTHO05D004473 4.7e-33 144.4 114 68.4
MELO3C012376.2 Cucumis melo HOM05D000207 ORTHO05D004473 6.2e-33 144.1 114 68.4
CsaV3_5G035750 Cucumis sativus L. HOM05D000207 ORTHO05D004473 6.2e-33 144.1 114 68.4
ECA233G1732 Erigeron canadensis HOM05D000038 ORTHO05D004473 6.2e-33 144.1 114 67.5
Hma1.2p1_1625F.1_g294310 Hydrangea macrophylla HOM05D000207 ORTHO05D004473 6.2e-33 144.1 114 66.7
Lsat_1_v5_gn_8_22900 Lactuca sativa HOM05D000207 ORTHO05D004473 6.2e-33 144.1 114 67.5
Manes.07G093000 Manihot esculenta HOM05D000207 ORTHO05D004473 6.2e-33 144.1 114 67.5
Nitab4.5_0001313g0010 Nicotiana tabacum HOM05D000207 ORTHO05D004473 6.2e-33 144.1 114 66.7
Ah.04g163540 Amaranthus hybridus HOM05D000207 ORTHO05D004473 1.1e-32 143.3 114 67.5
arahy.Tifrunner.gnm1.ann1.I5SWNV Arachis hypogaea HOM05D000207 ORTHO05D004473 1.1e-32 143.3 114 67.5
arahy.Tifrunner.gnm1.ann1.MV6I8X Arachis hypogaea HOM05D000207 ORTHO05D004473 1.1e-32 143.3 114 67.5
Gohir.D05G291500 Gossypium hirsutum HOM05D000207 ORTHO05D004473 1.1e-32 143.3 114 66.7
Gorai.009G307200 Gossypium raimondii HOM05D000207 ORTHO05D004473 1.1e-32 143.3 114 66.7
PGR044G1457 Punica granatum HOM05D000207 ORTHO05D004473 1.1e-32 143.3 114 67.5
AUR62043740 Chenopodium quinoa HOM05D000207 ORTHO05D004473 1.4e-32 142.9 114 67.5
Migut.F01666 Erythranthe guttata HOM05D000207 ORTHO05D004473 1.4e-32 142.9 114 67.5
SalBow4G0022 Salvia bowleyana HOM05D000207 ORTHO05D004473 1.4e-32 142.9 114 67.5
Dinv31278 Davidia involucrata HOM05D001491 ORTHO05D004473 2.3e-32 142.1 115 69.6
CSS0035322 Camellia sinensis var. sinensis HOM05D000207 ORTHO05D004473 3.1e-32 141.7 115 69.6
CiPaw.13G034800 Carya illinoinensis HOM05D000207 ORTHO05D004473 3.1e-32 141.7 114 67.5
Gohir.A05G290300 Gossypium hirsutum HOM05D000207 ORTHO05D004473 4.0e-32 141.4 114 65.8
Gohir.A05G394300 Gossypium hirsutum HOM05D000207 ORTHO05D004473 5.2e-32 141.0 114 66.7
Sed0002916 Sechium edule HOM05D000207 ORTHO05D004473 5.2e-32 141.0 115 68.7
unitig_736.g22534 Utricularia gibba HOM05D000207 ORTHO05D004473 5.2e-32 141.0 114 66.7
HanXRQChr12g0368411 Helianthus annuus HOM05D000207 ORTHO05D004473 8.9e-32 140.2 114 65.8
MSTRG.9118 Avicennia marina HOM05D000207 ORTHO05D004473 1.5e-31 139.4 114 64.9
DCAR_014270 Daucus carota HOM05D000207 ORTHO05D004473 1.5e-31 139.4 119 63.9
COL.COLO4_07609 Corchorus olitorius HOM05D001491 ORTHO05D004473 2.0e-31 139.0 130 60.0
Nn6g35103 Nelumbo nucifera HOM05D000207 ORTHO05D004473 2.6e-31 138.7 114 66.7
MSTRG.27513 Avicennia marina HOM05D000207 ORTHO05D004473 3.4e-31 138.3 114 66.7
BcaC06g32162 Brassica carinata HOM05D000207 ORTHO05D004473 4.4e-31 137.9 138 57.2
TAR623G1710 Trochodendron aralioides HOM05D000207 ORTHO05D004473 4.4e-31 137.9 114 67.5
Aqoxy2G01506 Aquilegia oxysepala HOM05D000207 ORTHO05D004473 9.9e-31 136.7 114 64.9
FAN10G1843 Fragaria x ananassa HOM05D000207 ORTHO05D004473 9.9e-31 136.7 136 58.1
Cpa.g.sc128.64 Carica papaya HOM05D000207 ORTHO05D004473 1.3e-30 136.3 114 66.7
PSO063G1339 Papaver somniferum HOM05D000207 ORTHO05D004473 3.7e-30 134.8 114 62.3
PSO339G3642 Papaver somniferum HOM05D000207 ORTHO05D004473 1.1e-29 133.3 114 61.4
HanXRQChr08g0218051 Helianthus annuus HOM05D000207 ORTHO05D004473 1.9e-29 132.5 115 64.3
PSO339G2723 Papaver somniferum HOM05D000207 ORTHO05D004473 2.4e-29 132.1 114 61.4
PSO384G5087 Papaver somniferum HOM05D000207 ORTHO05D004473 2.4e-29 132.1 114 61.4
CDE08G1512 Ceratophyllum demersum HOM05D000207 ORTHO05D004473 9.2e-29 130.2 114 64.0
FAN03G1778 Fragaria x ananassa HOM05D000207 ORTHO05D004473 9.2e-29 130.2 136 56.6
Lj3A934G30 Lonicera japonica HOM05D000207 ORTHO05D004473 1.2e-28 129.8 148 52.0
ATR0661G301 Amborella trichopoda HOM05D000207 ORTHO05D004473 6.0e-28 127.5 114 61.4
Lalb_Chr02g0151221 Lupinus albus HOM05D000207 ORTHO05D004473 6.0e-28 127.5 105 65.7
HPP92_025159 Vanilla planifolia HOM05D000207 ORTHO05D004473 6.0e-28 127.5 114 62.3
Zm00001eb146330 Zea mays HOM05D000207 ORTHO05D004473 4.3e-26 121.3 114 58.8
Hund06744 Selenicereus undatus HOM05D000207 ORTHO05D004473 7.3e-26 120.6 169 45.0
Os01g0872800 Oryza sativa ssp. japonica HOM05D000207 ORTHO05D004473 9.5e-26 120.2 114 57.9
unitig_899.g14484 Utricularia gibba HOM05D000207 ORTHO05D004473 1.6e-25 119.4 80 75.0
CSS0023838 Camellia sinensis var. sinensis HOM05D000207 ORTHO05D004473 8.1e-25 117.1 114 62.3
MBI17_g17191_MAGBIO Magnolia biondii HOM05D000207 ORTHO05D004473 8.1e-25 117.1 109 61.5
Gohir.A05G394175 Gossypium hirsutum HOM05D000207 ORTHO05D004473 2.4e-24 115.5 70 78.6
THA.LOC104816510 Tarenaya hassleriana HOM05D000207 ORTHO05D022125 4.9e-22 107.8 102 56.9
SEGI_25768 Sequoiadendron giganteum HOM05D000207 ORTHO05D004473 5.4e-21 104.4 114 49.1
Lj2C25T7 Lonicera japonica HOM05D000207 ORTHO05D004473 3.0e-19 98.6 114 53.5
DCAR_006380 Daucus carota HOM05D000207 ORTHO05D004473 1.1e-18 96.7 114 51.8
SMO367G0096 Selaginella moellendorffii HOM05D000207 ORTHO05D004473 4.3e-18 94.7 117 47.0
SGA_v2.0_scaffold13G06504 Striga asiatica HOM05D000207 ORTHO05D004473 2.1e-17 92.4 87 59.8
HPP92_009267 Vanilla planifolia HOM05D000207 ORTHO05D004473 8.1e-17 90.5 112 48.2
Mapoly0015s0182 Marchantia polymorpha HOM05D000207 ORTHO05D004473 7.6e-15 84.0 113 45.1
AagrBONN_evm.TU.Sc2ySwM_368.3398 Anthoceros agrestis HOM05D000207 ORTHO05D004473 1.3e-11 73.2 114 39.5
Pp3c26_8560 Physcomitrium patens HOM05D000207 ORTHO05D004473 5.6e-10 67.8 115 39.1
SHI21308 Sapria himalayana HOM05D000207 ORTHO05D004473 5.6e-10 67.8 45 68.9
CDE02G2680 Ceratophyllum demersum HOM05D000146 ORTHO05D004473 4.0e-08 61.6 41 73.2
Cre11.g467568 Chlamydomonas reinhardtii HOM05D000207 ORTHO05D004473 1.5e-07 59.7 116 33.6
BcaNung05806 Brassica carinata HOM05D000146 ORTHO05D004473 3.8e-06 55.1 27 92.6


User provided reference genes

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