Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0034232 Camellia sinensis var. sinensis HOM05D004470 ORTHO05D005079 1.0e-57 226.5 111 100.0
Hma1.2p1_0052F.1_g030690 Hydrangea macrophylla HOM05D004470 ORTHO05D005079 7.3e-48 193.7 111 82.9
PGSC0003DMG400002761 Solanum tuberosum HOM05D004470 ORTHO05D005079 2.4e-46 188.7 112 83.9
Dinv30905 Davidia involucrata HOM05D004470 ORTHO05D005079 3.1e-46 188.3 111 81.1
Nitab4.5_0010074g0010 Nicotiana tabacum HOM05D004470 ORTHO05D005079 5.2e-46 187.6 113 82.3
Sopen01g044200 Solanum pennellii HOM05D004470 ORTHO05D005079 5.2e-46 187.6 112 83.0
Nitab4.5_0001338g0040 Nicotiana tabacum HOM05D004470 ORTHO05D005079 6.9e-46 187.2 113 81.4
Hma1.2p1_0008F-1.1_g005470 Hydrangea macrophylla HOM05D004470 ORTHO05D005079 2.6e-45 185.3 111 81.1
Peaxi162Scf00357g00829 Petunia axillaris HOM05D004470 ORTHO05D005079 3.4e-45 184.9 113 84.1
CAN.G1076.31 Capsicum annuum HOM05D004470 ORTHO05D005079 2.4e-43 178.7 113 82.3
Nitab4.5_0001255g0050 Nicotiana tabacum HOM05D004470 ORTHO05D005079 2.3e-41 172.2 141 66.0
Sabra13G0006500 Salix brachista HOM05D004470 ORTHO05D005079 3.0e-41 171.8 114 77.2
Actinidia35512 Actinidia chinensis HOM05D004470 ORTHO05D005079 1.9e-40 169.1 91 89.0
CANSAT56G4147 Cannabis sativa HOM05D004470 ORTHO05D005079 3.3e-40 168.3 109 75.2
Potri.005G011800 Populus trichocarpa HOM05D004470 ORTHO05D005079 3.3e-40 168.3 114 75.4
TAR362G0763 Trochodendron aralioides HOM05D004470 ORTHO05D005079 3.3e-40 168.3 110 75.5
Atru.chr1.2932 Acer truncatum HOM05D004470 ORTHO05D005079 5.6e-40 167.5 113 79.6
PGR031G2302 Punica granatum HOM05D004470 ORTHO05D005079 5.6e-40 167.5 119 71.4
TWI34G1281 Tripterygium wilfordii HOM05D004470 ORTHO05D005079 5.6e-40 167.5 114 75.4
MSTRG.5145 Avicennia marina HOM05D004470 ORTHO05D005079 9.6e-40 166.8 115 73.0
CANSAT54G2827 Cannabis sativa HOM05D004470 ORTHO05D005079 9.6e-40 166.8 111 75.7
Nn3g21765 Nelumbo nucifera HOM05D004470 ORTHO05D005079 9.6e-40 166.8 101 81.2
Potri.013G007600 Populus trichocarpa HOM05D004470 ORTHO05D005079 1.3e-39 166.4 114 74.6
Sabra05G0020100 Salix brachista HOM05D004470 ORTHO05D005079 1.3e-39 166.4 114 74.6
Oeu000058.1 Olea europaea HOM05D004470 ORTHO05D005079 1.6e-39 166.0 111 73.0
Prupe.3G062500 Prunus persica HOM05D004470 ORTHO05D005079 1.6e-39 166.0 111 76.6
TWI36G1558 Tripterygium wilfordii HOM05D004470 ORTHO05D005079 1.6e-39 166.0 114 76.3
SGA_v2.0_scaffold37G14596 Striga asiatica HOM05D004470 ORTHO05D005079 8.1e-39 163.7 113 73.5
Migut.N00943 Erythranthe guttata HOM05D004470 ORTHO05D005079 1.1e-38 163.3 113 72.6
TWI63G0379 Tripterygium wilfordii HOM05D004470 ORTHO05D005079 1.1e-38 163.3 115 73.9
Prupe.2G047800 Prunus persica HOM05D004470 ORTHO05D005079 1.8e-38 162.5 111 73.9
Haze_04037 Corylus avellana HOM05D004470 ORTHO05D005079 4.0e-38 161.4 113 73.5
FAN02G2550 Fragaria x ananassa HOM05D004470 ORTHO05D005079 6.9e-38 160.6 111 73.9
FAN05G2322 Fragaria x ananassa HOM05D004470 ORTHO05D005079 9.0e-38 160.2 111 73.9
RcHm_v2.0_Chr2g0139741 Rosa chinensis HOM05D004470 ORTHO05D005079 9.0e-38 160.2 111 73.9
FAN09G3660 Fragaria x ananassa HOM05D004470 ORTHO05D005079 1.5e-37 159.5 111 73.0
Manes.09G177800 Manihot esculenta HOM05D004470 ORTHO05D005079 1.5e-37 159.5 110 73.6
SalBow5G0245 Salvia bowleyana HOM05D004470 ORTHO05D005079 1.5e-37 159.5 111 72.1
Thecc.05G324600 Theobroma cacao HOM05D004470 ORTHO05D005079 1.5e-37 159.5 111 73.0
CiPaw.08G154600 Carya illinoinensis HOM05D004470 ORTHO05D005079 2.0e-37 159.1 112 72.3
Sed0027904 Sechium edule HOM05D004470 ORTHO05D005079 2.0e-37 159.1 111 75.7
Duzib128G0232 Durio zibethinus HOM05D004470 ORTHO05D005079 2.6e-37 158.7 111 73.9
FAN14G0179 Fragaria x ananassa HOM05D004470 ORTHO05D005079 2.6e-37 158.7 111 73.0
Manes.08G110300 Manihot esculenta HOM05D004470 ORTHO05D005079 2.6e-37 158.7 111 72.1
CsaV3_1G037920 Cucumis sativus L. HOM05D004470 ORTHO05D005079 3.4e-37 158.3 111 72.1
DCAR_025290 Daucus carota HOM05D004470 ORTHO05D005079 3.4e-37 158.3 111 72.1
MD10G1090000 Malus domestica HOM05D004470 ORTHO05D005079 4.5e-37 157.9 100 77.0
QL03p015399 Quercus lobata HOM05D004470 ORTHO05D005079 5.8e-37 157.5 112 71.4
MELO3C015252.2 Cucumis melo HOM05D004470 ORTHO05D005079 1.7e-36 156.0 111 72.1
Lj6g0017458 Lotus japonicus HOM05D004470 ORTHO05D005079 1.7e-36 156.0 112 73.2
COL.COLO4_05537 Corchorus olitorius HOM05D004470 ORTHO05D005079 2.2e-36 155.6 111 72.1
Cc02_g35220 Coffea canephora HOM05D004470 ORTHO05D005079 2.9e-36 155.2 110 69.1
Duzib106G0025 Durio zibethinus HOM05D004470 ORTHO05D005079 2.9e-36 155.2 111 71.2
Gohir.A08G205100 Gossypium hirsutum HOM05D004470 ORTHO05D005079 3.8e-36 154.8 104 72.1
Gohir.D08G222200 Gossypium hirsutum HOM05D004470 ORTHO05D005079 3.8e-36 154.8 104 72.1
Gorai.004G236000 Gossypium raimondii HOM05D004470 ORTHO05D005079 3.8e-36 154.8 104 72.1
CDE02G2719 Ceratophyllum demersum HOM05D004470 ORTHO05D005079 8.4e-36 153.7 95 77.9
GSVIVG01031257001 Vitis vinifera HOM05D004470 ORTHO05D005079 8.4e-36 153.7 88 80.7
SGA_v2.0_scaffold5G02899 Striga asiatica HOM05D004470 ORTHO05D005079 1.1e-35 153.3 112 68.8
Eucgr.H03299 Eucalyptus grandis HOM05D004470 ORTHO05D005079 1.9e-35 152.5 94 79.8
arahy.Tifrunner.gnm1.ann1.IGN13F Arachis hypogaea HOM05D004470 ORTHO05D005079 2.4e-35 152.1 96 75.0
Eucgr.A00650 Eucalyptus grandis HOM05D004470 ORTHO05D005079 4.2e-35 151.4 93 76.3
CDE09G1304 Ceratophyllum demersum HOM05D004470 ORTHO05D005079 5.4e-35 151.0 95 75.8
CARHR186760 Cardamine hirsuta HOM05D004470 ORTHO05D005079 9.3e-35 150.2 112 65.2
CiPaw.07G030800 Carya illinoinensis HOM05D004470 ORTHO05D005079 9.3e-35 150.2 112 68.8
MD07G1055000 Malus domestica HOM05D004470 ORTHO05D005079 9.3e-35 150.2 88 78.4
Medtr2g023920 Medicago truncatula HOM05D004470 ORTHO05D005079 1.2e-34 149.8 83 84.3
Rhsim11G0097400 Rhododendron simsii HOM05D004470 ORTHO05D005079 1.2e-34 149.8 210 45.7
TPR.G29395 Trifolium pratense HOM05D004470 ORTHO05D005079 1.2e-34 149.8 83 84.3
TPR.G34849 Trifolium pratense HOM05D004470 ORTHO05D005079 1.2e-34 149.8 83 84.3
Aqoxy2G02663 Aquilegia oxysepala HOM05D004470 ORTHO05D005079 2.7e-34 148.7 89 79.8
AUR62006764 Chenopodium quinoa HOM05D004470 ORTHO05D005079 2.7e-34 148.7 112 69.6
Sc16g0009110 Simmondsia chinensis HOM05D004470 ORTHO05D005079 3.5e-34 148.3 88 83.0
EL10Ac4g09488 Beta vulgaris HOM05D004470 ORTHO05D005079 4.6e-34 147.9 108 70.4
Ciclev10002908m.g Citrus clementina HOM05D004470 ORTHO05D005079 4.6e-34 147.9 113 69.9
arahy.Tifrunner.gnm1.ann1.3R4C35 Arachis hypogaea HOM05D004470 ORTHO05D005079 6.0e-34 147.5 85 82.4
arahy.Tifrunner.gnm1.ann1.44SN5D Arachis hypogaea HOM05D004470 ORTHO05D005079 6.0e-34 147.5 85 82.4
Glyma.10G146200 Glycine max HOM05D004470 ORTHO05D005079 6.0e-34 147.5 108 69.4
Glyma.20G096000 Glycine max HOM05D004470 ORTHO05D005079 6.0e-34 147.5 111 65.8
Phvul.007G202300 Phaseolus vulgaris HOM05D004470 ORTHO05D005079 6.0e-34 147.5 97 73.2
Ah.06g196140 Amaranthus hybridus HOM05D004470 ORTHO05D005079 7.9e-34 147.1 107 71.0
AL6G38670 Arabidopsis lyrata HOM05D004470 ORTHO05D005079 1.0e-33 146.7 115 66.1
Sabra05G0008600 Salix brachista HOM05D004470 ORTHO05D005079 1.3e-33 146.4 155 54.8
Ah.16g100620 Amaranthus hybridus HOM05D004470 ORTHO05D005079 1.8e-33 146.0 107 70.1
Cfa006723 Carpinus fangiana HOM05D004470 ORTHO05D005079 2.3e-33 145.6 109 68.8
BcaNung03672 Brassica carinata HOM05D004470 ORTHO05D005079 3.0e-33 145.2 111 64.0
ClCG03G017770 Citrullus lanatus HOM05D004470 ORTHO05D005079 3.0e-33 145.2 145 57.2
ATR0693G181 Amborella trichopoda HOM05D004470 ORTHO05D005079 3.9e-33 144.8 87 81.6
Hund07308 Selenicereus undatus HOM05D004470 ORTHO05D005079 3.9e-33 144.8 111 67.6
C09p06260 Brassica napus HOM05D004470 ORTHO05D005079 6.7e-33 144.1 112 62.5
Lalb_Chr02g0147721 Lupinus albus HOM05D004470 ORTHO05D005079 6.7e-33 144.1 110 65.5
Psat1g179040 Pisum sativum HOM05D004470 ORTHO05D005079 8.7e-33 143.7 83 81.9
BcaC04g23637 Brassica carinata HOM05D004470 ORTHO05D005079 2.5e-32 142.1 113 62.8
BolC9t53546H Brassica oleracea HOM05D004470 ORTHO05D005079 2.5e-32 142.1 112 61.6
Sp2g21200 Schrenkiella parvula HOM05D004470 ORTHO05D005079 2.5e-32 142.1 113 62.8
BraA09t36207Z Brassica rapa HOM05D004470 ORTHO05D005079 3.3e-32 141.7 112 61.6
vmacro01577 Vaccinium macrocarpon HOM05D004470 ORTHO05D005079 4.3e-32 141.4 105 73.3
BcaNung03915 Brassica carinata HOM05D004470 ORTHO05D005079 5.6e-32 141.0 114 63.2
A09p05650 Brassica napus HOM05D004470 ORTHO05D005079 5.6e-32 141.0 112 61.6
BraA06t26628Z Brassica rapa HOM05D004470 ORTHO05D005079 7.4e-32 140.6 114 63.2
A06p37040 Brassica napus HOM05D004470 ORTHO05D005079 9.6e-32 140.2 114 63.2
BolC7t44679H Brassica oleracea HOM05D004470 ORTHO05D005079 1.3e-31 139.8 112 62.5
Ca_10181_v3 Cicer arietinum L. HOM05D004470 ORTHO05D005079 1.3e-31 139.8 98 73.5
AL3G16550 Arabidopsis lyrata HOM05D004470 ORTHO05D005079 2.8e-31 138.7 112 61.6
Lsat_1_v5_gn_2_67201 Lactuca sativa HOM05D004470 ORTHO05D005079 2.8e-31 138.7 116 62.9
Nn4g25533 Nelumbo nucifera HOM05D004470 ORTHO05D005079 2.8e-31 138.7 156 52.6
Carub.0003s0517 Capsella rubella HOM05D004470 ORTHO05D005079 3.7e-31 138.3 112 60.7
Lju926A3T37 Lonicera japonica HOM05D004470 ORTHO05D005079 3.7e-31 138.3 85 77.6
BcaB04g19711 Brassica carinata HOM05D004470 ORTHO05D005079 6.2e-31 137.5 113 61.1
HanXRQChr14g0445721 Helianthus annuus HOM05D004470 ORTHO05D005079 6.2e-31 137.5 116 62.1
AT3G05810 Arabidopsis thaliana HOM05D004470 ORTHO05D005079 1.8e-30 136.0 113 61.9
CARHR080260 Cardamine hirsuta HOM05D004470 ORTHO05D005079 1.8e-30 136.0 112 59.8
Carub.0006s2445 Capsella rubella HOM05D004470 ORTHO05D005079 5.3e-30 134.4 109 59.6
Aa31LG5G16190 Aethionema arabicum HOM05D004470 ORTHO05D005079 9.0e-30 133.7 113 62.8
Hund21865 Selenicereus undatus HOM05D004470 ORTHO05D005079 9.0e-30 133.7 81 80.2
PSO339G4842 Papaver somniferum HOM05D004470 ORTHO05D005079 1.5e-29 132.9 85 76.5
THA.LOC104802774 Tarenaya hassleriana HOM05D004470 ORTHO05D005079 1.5e-29 132.9 113 61.9
MBI18_g35544_MAGBIO Magnolia biondii HOM05D004470 ORTHO05D005079 3.4e-29 131.7 119 58.8
Sp3g04670 Schrenkiella parvula HOM05D004470 ORTHO05D005079 4.5e-29 131.3 112 58.9
HPP92_027934 Vanilla planifolia HOM05D004470 ORTHO05D005079 5.8e-29 131.0 109 61.5
Thhalv10021798m.g Eutrema salsugineum HOM05D004470 ORTHO05D005079 7.6e-29 130.6 112 58.0
PSO513G0108 Papaver somniferum HOM05D004470 ORTHO05D005079 7.6e-29 130.6 85 74.1
THA.LOC104821881 Tarenaya hassleriana HOM05D004470 ORTHO05D005079 7.6e-29 130.6 89 70.8
ECA238G3981 Erigeron canadensis HOM05D004470 ORTHO05D005079 1.3e-28 129.8 118 60.2
PSO675G4687 Papaver somniferum HOM05D004470 ORTHO05D005079 2.2e-28 129.0 86 76.7
HPP92_002708 Vanilla planifolia HOM05D004470 ORTHO05D005079 2.9e-28 128.6 82 73.2
PSO541G1615 Papaver somniferum HOM05D004470 ORTHO05D005079 1.1e-27 126.7 85 74.1
HPP92_002665 Vanilla planifolia HOM05D004470 ORTHO05D005079 1.1e-27 126.7 109 60.6
DCAR_002036 Daucus carota HOM05D004470 ORTHO05D005079 3.5e-26 121.7 86 73.3
FAN26G0538 Fragaria x ananassa HOM05D004470 ORTHO05D005079 3.0e-25 118.6 114 58.8
MD15G1427600 Malus domestica HOM05D004470 ORTHO05D005079 1.1e-24 116.7 78 73.1
Zm00001eb340410 Zea mays HOM05D004470 ORTHO05D005079 1.9e-24 115.9 83 67.5
Zm00001eb130040 Zea mays HOM05D004470 ORTHO05D005079 2.5e-24 115.5 83 66.3
Os01g0299400 Oryza sativa ssp. japonica HOM05D004470 ORTHO05D005079 4.3e-24 114.8 84 65.5
FvH4_6g32060 Fragaria vesca HOM05D004470 ORTHO05D005079 1.3e-23 113.2 84 70.2
FAN28G2801 Fragaria x ananassa HOM05D004470 ORTHO05D005079 1.6e-23 112.8 87 67.8
unitig_37.g12917 Utricularia gibba HOM05D004470 ORTHO05D005079 3.1e-22 108.6 92 59.8
Os10g0150200 Oryza sativa ssp. japonica HOM05D004470 ORTHO05D005079 1.2e-21 106.7 79 64.6
VMungo0720G0966 Vigna mungo HOM05D004470 ORTHO05D005079 2.0e-21 105.9 95 60.0
AUR62000416 Chenopodium quinoa HOM05D004470 ORTHO05D005079 3.4e-21 105.1 88 65.9
vmacro19787 Vaccinium macrocarpon HOM05D000003 ORTHO05D005079 1.1e-19 100.1 65 72.3
HanXRQChr15g0471581 Helianthus annuus HOM05D004470 ORTHO05D005079 1.4e-19 99.8 91 57.1
Thhalv10026672m.g Eutrema salsugineum HOM05D004470 ORTHO05D005079 1.9e-19 99.4 91 57.1
Sc18g0006160 Simmondsia chinensis HOM05D004470 ORTHO05D005079 3.2e-19 98.6 63 76.2
Aa31LG1G17020 Aethionema arabicum HOM05D004470 ORTHO05D005079 4.6e-18 94.7 72 68.1
Mapoly0164s0021 Marchantia polymorpha HOM05D004470 ORTHO05D005079 3.9e-17 91.7 69 62.3
Rhsim05G0127900 Rhododendron simsii HOM05D004470 ORTHO05D005079 3.9e-17 91.7 51 88.2
BcaC03g17832 Brassica carinata HOM05D004470 ORTHO05D005079 1.5e-16 89.7 77 55.8
BcaNung06220 Brassica carinata HOM05D004470 ORTHO05D005079 1.5e-16 89.7 77 55.8
C02p58610 Brassica napus HOM05D004470 ORTHO05D005079 1.5e-16 89.7 74 59.5
AagrBONN_evm.TU.Sc2ySwM_228.963 Anthoceros agrestis HOM05D004470 ORTHO05D005079 5.7e-16 87.8 68 55.9
Cpa.g.sc48.175 Carica papaya HOM05D004470 ORTHO05D005079 2.2e-15 85.9 50 86.0
SEGI_31285 Sequoiadendron giganteum HOM05D004470 ORTHO05D005079 1.4e-14 83.2 60 70.0
Eucgr.H03248 Eucalyptus grandis HOM05D004470 ORTHO05D005079 2.4e-14 82.4 61 70.5
SHI42436 Sapria himalayana HOM05D004470 ORTHO05D005079 7.6e-13 77.4 55 67.3
Pp3c6_8090 Physcomitrium patens HOM05D004470 ORTHO05D005079 1.3e-12 76.6 68 50.0
AUR62036369 Chenopodium quinoa HOM05D004470 ORTHO05D005079 7.2e-11 70.9 46 78.3
A02p39020 Brassica napus HOM05D004470 ORTHO05D005079 1.4e-09 66.6 63 57.1
AUR62033672 Chenopodium quinoa HOM05D004470 ORTHO05D005079 1.4e-09 66.6 50 74.0
FAN28G0201 Fragaria x ananassa HOM05D004470 ORTHO05D005079 8.8e-09 63.9 58 60.3
BolC2t11922H Brassica oleracea HOM05D004470 ORTHO05D005079 7.4e-08 60.8 72 44.4
SMO116G0179 Selaginella moellendorffii HOM05D004470 ORTHO05D005079 7.4e-08 60.8 65 44.6
SMO195G0040 Selaginella moellendorffii HOM05D000001 ORTHO05D005079 7.4e-08 60.8 65 44.6


User provided reference genes

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