Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0034221 Camellia sinensis var. sinensis HOM05D006171 ORTHO05D007294 6.3e-174 614.0 308 100.0
CSS0033272 Camellia sinensis var. sinensis HOM05D006171 ORTHO05D007294 5.9e-156 554.3 309 93.2
Lsat_1_v5_gn_4_84921 Lactuca sativa HOM05D006171 ORTHO05D007294 1.1e-138 496.9 315 78.4
Rhsim12G0183500 Rhododendron simsii HOM05D006171 ORTHO05D007294 3.3e-138 495.4 307 82.1
Nitab4.5_0002700g0080 Nicotiana tabacum HOM05D006171 ORTHO05D007294 1.6e-137 493.0 310 78.1
CAN.G1008.12 Capsicum annuum HOM05D006171 ORTHO05D007294 4.0e-136 488.4 309 79.0
vmacro16838 Vaccinium macrocarpon HOM05D006171 ORTHO05D007294 4.0e-136 488.4 308 82.1
SalBow1G2136 Salvia bowleyana HOM05D006171 ORTHO05D007294 1.5e-135 486.5 311 79.1
Peaxi162Scf00314g01040 Petunia axillaris HOM05D006171 ORTHO05D007294 2.0e-135 486.1 310 76.1
Solyc03g117740.3 Solanum lycopersicum HOM05D006171 ORTHO05D007294 2.6e-135 485.7 308 78.2
Manes.11G069800 Manihot esculenta HOM05D006171 ORTHO05D007294 4.4e-135 485.0 317 77.6
PGSC0003DMG400014158 Solanum tuberosum HOM05D006171 ORTHO05D007294 7.5e-135 484.2 309 77.7
Sopen03g036650 Solanum pennellii HOM05D006171 ORTHO05D007294 9.8e-135 483.8 308 77.9
Nitab4.5_0004738g0050 Nicotiana tabacum HOM05D006171 ORTHO05D007294 4.9e-134 481.5 301 78.1
Potri.003G185754 Populus trichocarpa HOM05D006171 ORTHO05D007294 6.4e-134 481.1 294 81.6
Actinidia36860 Actinidia chinensis HOM05D006171 ORTHO05D007294 1.1e-133 480.3 262 88.5
Potri.003G185501 Populus trichocarpa HOM05D006171 ORTHO05D007294 2.4e-133 479.2 294 80.6
Potri.003G185901 Populus trichocarpa HOM05D006171 ORTHO05D007294 1.2e-132 476.9 261 88.1
TAR626G1848 Trochodendron aralioides HOM05D006171 ORTHO05D007294 2.0e-132 476.1 309 77.7
Lj5C82T4 Lonicera japonica HOM05D006171 ORTHO05D007294 3.5e-132 475.3 267 86.5
Cfa001846 Carpinus fangiana HOM05D006171 ORTHO05D007294 7.8e-132 474.2 281 82.2
PGR102G1595 Punica granatum HOM05D006171 ORTHO05D007294 1.3e-131 473.4 314 75.2
Ah.09g231760 Amaranthus hybridus HOM05D006171 ORTHO05D007294 2.3e-131 472.6 325 72.0
Prupe.3G104600 Prunus persica HOM05D006171 ORTHO05D007294 3.9e-131 471.9 261 86.2
THA.LOC104812426 Tarenaya hassleriana HOM05D006171 ORTHO05D007294 3.9e-131 471.9 261 87.0
Potri.001G040100 Populus trichocarpa HOM05D006171 ORTHO05D007294 1.9e-130 469.5 315 75.6
FvH4_6g28180 Fragaria vesca HOM05D006171 ORTHO05D007294 2.5e-130 469.2 309 75.7
FAN14G3270 Fragaria x ananassa HOM05D006171 ORTHO05D007294 2.5e-130 469.2 309 75.7
Sabra03G0135700 Salix brachista HOM05D006171 ORTHO05D007294 4.3e-130 468.4 301 78.4
Duzib235G0222 Durio zibethinus HOM05D006171 ORTHO05D007294 7.3e-130 467.6 278 81.3
AUR62002650 Chenopodium quinoa HOM05D006171 ORTHO05D007294 9.5e-130 467.2 260 85.4
Eucgr.F03988 Eucalyptus grandis HOM05D006171 ORTHO05D007294 1.6e-129 466.5 274 83.2
MSTRG.9390 Avicennia marina HOM05D006171 ORTHO05D007294 2.1e-129 466.1 302 77.5
Thecc.06G048100 Theobroma cacao HOM05D006171 ORTHO05D007294 3.6e-129 465.3 308 76.3
CiPaw.01G256900 Carya illinoinensis HOM05D006171 ORTHO05D007294 8.1e-129 464.2 309 75.7
ECA232G3902 Erigeron canadensis HOM05D006171 ORTHO05D007294 8.1e-129 464.2 260 85.0
Cpa.g.sc95.67 Carica papaya HOM05D006171 ORTHO05D007294 1.1e-128 463.8 291 77.7
Nn2g12468 Nelumbo nucifera HOM05D006171 ORTHO05D007294 1.1e-128 463.8 309 76.4
FAN09G0753 Fragaria x ananassa HOM05D006171 ORTHO05D007294 1.8e-128 463.0 309 75.4
A09p61030 Brassica napus HOM05D000031 ORTHO05D007294 2.3e-128 462.6 260 83.5
Sp1g14390 Schrenkiella parvula HOM05D006171 ORTHO05D007294 4.0e-128 461.8 261 83.5
Sc10g0006500 Simmondsia chinensis HOM05D006171 ORTHO05D007294 4.0e-128 461.8 306 75.8
Migut.D01148 Erythranthe guttata HOM05D006171 ORTHO05D007294 6.8e-128 461.1 304 77.3
Hund22405 Selenicereus undatus HOM05D006171 ORTHO05D007294 6.8e-128 461.1 284 79.2
Aqoxy7G02339 Aquilegia oxysepala HOM05D006171 ORTHO05D007294 8.9e-128 460.7 273 79.9
Carub.0001s1588 Capsella rubella HOM05D006171 ORTHO05D007294 8.9e-128 460.7 313 73.5
COL.COLO4_26789 Corchorus olitorius HOM05D006171 ORTHO05D007294 1.2e-127 460.3 254 86.6
Gohir.D05G117900 Gossypium hirsutum HOM05D006171 ORTHO05D007294 1.2e-127 460.3 255 85.9
AT1G16080 Arabidopsis thaliana HOM05D006171 ORTHO05D007294 1.5e-127 459.9 261 82.4
HanXRQChr16g0499501 Helianthus annuus HOM05D006171 ORTHO05D007294 2.0e-127 459.5 314 73.9
TWI12G1342 Tripterygium wilfordii HOM05D006171 ORTHO05D007294 2.0e-127 459.5 308 74.0
BraA09t41476Z Brassica rapa HOM05D000031 ORTHO05D007294 2.6e-127 459.1 309 74.4
Thhalv10008259m.g Eutrema salsugineum HOM05D006171 ORTHO05D007294 2.6e-127 459.1 261 83.1
RcHm_v2.0_Chr2g0132161 Rosa chinensis HOM05D006171 ORTHO05D007294 4.4e-127 458.4 304 75.3
AL1G28240 Arabidopsis lyrata HOM05D006171 ORTHO05D007294 9.9e-127 457.2 313 73.2
MD09G1228700 Malus domestica HOM05D006171 ORTHO05D007294 1.7e-126 456.4 261 83.9
Atru.chr1.2816 Acer truncatum HOM05D006171 ORTHO05D007294 2.2e-126 456.1 296 76.4
CsaV3_7G031750 Cucumis sativus L. HOM05D006171 ORTHO05D007294 2.9e-126 455.7 309 74.8
MELO3C023482.2 Cucumis melo HOM05D006171 ORTHO05D007294 8.3e-126 454.1 309 74.4
Potri.001G041140 Populus trichocarpa HOM05D006171 ORTHO05D007294 8.3e-126 454.1 315 74.3
BcaB02g06590 Brassica carinata HOM05D006171 ORTHO05D007294 1.9e-125 453.0 261 82.8
A06p12100 Brassica napus HOM05D006171 ORTHO05D007294 1.9e-125 453.0 309 72.5
BraA06t24379Z Brassica rapa HOM05D006171 ORTHO05D007294 2.4e-125 452.6 309 72.5
SGA_v2.0_scaffold74G24604 Striga asiatica HOM05D006171 ORTHO05D007294 2.4e-125 452.6 307 76.5
ClCG09G003450 Citrullus lanatus HOM05D006171 ORTHO05D007294 7.1e-125 451.1 307 73.6
BcaC05g25605 Brassica carinata HOM05D006171 ORTHO05D007294 1.6e-124 449.9 261 81.6
Lj3g0005429 Lotus japonicus HOM05D006171 ORTHO05D007294 1.6e-124 449.9 291 75.9
BolC5t30159H Brassica oleracea HOM05D006171 ORTHO05D007294 2.1e-124 449.5 309 71.5
AUR62034059 Chenopodium quinoa HOM05D006171 ORTHO05D007294 2.1e-124 449.5 304 73.0
Oeu003115.1 Olea europaea HOM05D006171 ORTHO05D007294 3.5e-124 448.7 243 87.7
Oeu003116.1 Olea europaea HOM05D006171 ORTHO05D007294 3.5e-124 448.7 243 87.7
Ciclev10025944m.g Citrus clementina HOM05D006171 ORTHO05D007294 4.6e-124 448.4 309 72.5
GSVIVG01016093001 Vitis vinifera HOM05D006171 ORTHO05D007294 6.0e-124 448.0 243 88.1
C08p44630 Brassica napus HOM05D000031 ORTHO05D007294 1.0e-123 447.2 260 80.8
BolC8t52009H Brassica oleracea HOM05D000031 ORTHO05D007294 1.0e-123 447.2 260 80.8
Medtr4g007910 Medicago truncatula HOM05D006171 ORTHO05D007294 1.7e-123 446.4 276 78.6
unitig_62.g23820 Utricularia gibba HOM05D006171 ORTHO05D007294 2.3e-123 446.0 290 75.9
BcaB03g14506 Brassica carinata HOM05D000031 ORTHO05D007294 3.0e-123 445.7 261 80.8
C05p14280 Brassica napus HOM05D006171 ORTHO05D007294 5.1e-123 444.9 261 81.2
Aa31LG7G650 Aethionema arabicum HOM05D006171 ORTHO05D007294 1.1e-122 443.7 279 77.1
Lalb_Chr25g0278721 Lupinus albus HOM05D006171 ORTHO05D007294 1.9e-122 443.0 300 74.0
arahy.Tifrunner.gnm1.ann1.B85C5A Arachis hypogaea HOM05D006171 ORTHO05D007294 9.5e-122 440.7 296 74.7
Glyma.08G220900 Glycine max HOM05D006171 ORTHO05D007294 9.5e-122 440.7 279 74.9
arahy.Tifrunner.gnm1.ann1.F1WQ27 Arachis hypogaea HOM05D006171 ORTHO05D007294 1.2e-121 440.3 296 74.7
HPP92_021945 Vanilla planifolia HOM05D006171 ORTHO05D007294 1.6e-121 439.9 261 80.5
VMungo0647G1588 Vigna mungo HOM05D006171 ORTHO05D007294 4.7e-121 438.3 280 74.6
Glyma.07G020900 Glycine max HOM05D006171 ORTHO05D007294 6.2e-121 438.0 289 74.0
Psat7g260440 Pisum sativum HOM05D006171 ORTHO05D007294 1.1e-120 437.2 291 74.6
Cc04_g05360 Coffea canephora HOM05D006171 ORTHO05D007294 6.8e-120 434.5 243 85.2
VMungo1309G0227 Vigna mungo HOM05D006171 ORTHO05D007294 8.9e-120 434.1 282 73.4
Phvul.008G253700 Phaseolus vulgaris HOM05D006171 ORTHO05D007294 2.6e-119 432.6 261 78.5
Phvul.009G155700 Phaseolus vulgaris HOM05D006171 ORTHO05D007294 3.4e-119 432.2 279 72.4
CDE07G0158 Ceratophyllum demersum HOM05D006171 ORTHO05D007294 1.7e-118 429.9 278 73.4
Zm00001eb177930 Zea mays HOM05D006171 ORTHO05D007294 1.2e-116 423.7 310 69.4
MBI14_g16440_MAGBIO Magnolia biondii HOM05D006171 ORTHO05D007294 1.6e-116 423.3 252 81.3
EL10Ac8g19420 Beta vulgaris HOM05D006171 ORTHO05D007294 6.6e-115 417.9 316 67.1
CBR_g3722 Chara braunii HOM05D006171 ORTHO05D007294 5.3e-104 381.7 261 70.5
Gorai.009G121800 Gossypium raimondii HOM05D006171 ORTHO05D007294 5.3e-104 381.7 219 84.9
Pp3c1_40240 Physcomitrium patens HOM05D006171 ORTHO05D007294 6.9e-104 381.3 269 68.4
SMO356G0223 Selaginella moellendorffii HOM05D006171 ORTHO05D007294 5.4e-101 371.7 259 68.7
CBR_g39222 Chara braunii HOM05D006171 ORTHO05D007294 7.9e-100 367.9 256 69.1
Mapoly0047s0137 Marchantia polymorpha HOM05D006171 ORTHO05D007294 1.8e-99 366.7 260 66.5
FAN05G3051 Fragaria x ananassa HOM05D006171 ORTHO05D007294 2.5e-98 362.8 284 68.3
Dinv21434 Davidia involucrata HOM05D006171 ORTHO05D007294 1.3e-97 360.5 249 76.7
Os08g0266300 Oryza sativa ssp. japonica HOM05D006171 ORTHO05D007294 1.3e-97 360.5 249 73.9
CANSAT64G1829 Cannabis sativa HOM05D006171 ORTHO05D007294 3.4e-95 352.4 192 85.9
MD17G1227100 Malus domestica HOM05D006171 ORTHO05D007294 1.9e-93 346.7 190 86.3
HanXRQChr16g0499491 Helianthus annuus HOM05D006171 ORTHO05D007294 3.2e-93 345.9 264 63.6
PSO017G5952 Papaver somniferum HOM05D006171 ORTHO05D007294 2.5e-90 336.3 192 81.8
ATR0580G215 Amborella trichopoda HOM05D006171 ORTHO05D007294 5.6e-90 335.1 190 82.6
PSO170G6342 Papaver somniferum HOM05D006171 ORTHO05D007294 1.3e-89 334.0 192 81.2
MCO15G666 Micromonas commoda HOM05D006171 ORTHO05D007294 4.2e-85 318.9 263 60.8
Cre10.g435850 Chlamydomonas reinhardtii HOM05D006171 ORTHO05D007294 1.8e-83 313.5 256 62.1
Gohir.A05G117000 Gossypium hirsutum HOM05D006171 ORTHO05D007294 3.3e-82 309.3 173 85.0
PRCOL_00006061 Prasinoderma coloniale HOM05D006171 ORTHO05D007294 7.4e-82 308.1 243 61.7
QL05p037111 Quercus lobata HOM05D006171 ORTHO05D007294 2.8e-81 306.2 186 81.2
AagrBONN_evm.TU.Sc2ySwM_344.694 Anthoceros agrestis HOM05D006171 ORTHO05D007294 9.0e-80 301.2 223 66.8
Hma1.2p1_2173F.1_g316040 Hydrangea macrophylla HOM05D006171 ORTHO05D007294 2.7e-76 289.7 207 73.9
Aqoxy6G02563 Aquilegia oxysepala HOM05D006171 ORTHO05D007294 2.8e-65 253.1 310 46.8
Rhsim12G0183600 Rhododendron simsii HOM05D006171 ORTHO05D007294 2.9e-62 243.0 255 53.7
RcHm_v2.0_Chr2g0132191 Rosa chinensis HOM05D006171 ORTHO05D007294 5.0e-62 242.3 188 65.4
Sed0008158 Sechium edule HOM05D006171 ORTHO05D007294 3.3e-58 229.6 144 75.7
AagrBONN_evm.TU.Sc2ySwM_344.1199 Anthoceros agrestis HOM05D006171 ORTHO05D007294 3.3e-37 159.8 276 38.4
QL05p037113 Quercus lobata HOM05D006171 ORTHO05D007294 1.0e-35 154.8 82 85.4
CDE04G3654 Ceratophyllum demersum HOM05D006171 ORTHO05D007294 2.3e-35 153.7 136 58.1
SEGI_00638 Sequoiadendron giganteum HOM05D006171 ORTHO05D007294 8.6e-22 108.6 65 78.5
Cre03.g167050 Chlamydomonas reinhardtii HOM05D006171 ORTHO05D007294 2.3e-19 100.5 327 27.5
PRCOL_00003410 Prasinoderma coloniale HOM05D006171 ORTHO05D007294 6.8e-19 99.0 274 32.5
RcHm_v2.0_Chr2g0132221 Rosa chinensis HOM05D006171 ORTHO05D007294 2.6e-18 97.1 62 72.6
Nn5g31109 Nelumbo nucifera HOM05D006171 ORTHO05D007294 3.5e-15 86.7 81 61.7
arahy.Tifrunner.gnm1.ann1.VYJR5C Arachis hypogaea HOM05D006171 ORTHO05D007294 2.3e-14 84.0 104 52.9


User provided reference genes

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