Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0034194 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 3.4e-214 748.0 377 100.0
CSS0025326 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 9.0e-199 696.8 379 93.9
CSS0020440 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 1.7e-192 676.0 368 93.8
CSS0043256 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 2.4e-191 672.2 367 93.5
CSS0037716 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 5.5e-188 661.0 397 87.4
CSS0031560 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 1.4e-178 629.8 401 84.0
CSS0008548 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 1.2e-153 547.0 414 74.2
CSS0040633 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 3.9e-149 531.9 397 74.8
Actinidia28645 Actinidia chinensis HOM05D004724 ORTHO05D005734 1.0e-141 507.3 415 67.2
Lj6A780T47 Lonicera japonica HOM05D004724 ORTHO05D005734 9.2e-135 484.2 417 64.0
CSS0003173 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 6.6e-133 478.0 417 67.1
Hma1.2p1_0354F.1_g133420 Hydrangea macrophylla HOM05D004724 ORTHO05D005734 6.6e-133 478.0 415 64.6
GSVIVG01012211001 Vitis vinifera HOM05D004724 ORTHO05D005734 8.9e-130 467.6 415 61.4
Nn4g23396 Nelumbo nucifera HOM05D004724 ORTHO05D005734 6.4e-128 461.5 410 61.5
CSS0030883 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 1.2e-126 457.2 403 66.3
QL03p072107 Quercus lobata HOM05D004724 ORTHO05D005734 1.2e-126 457.2 413 60.5
Nn3g17424 Nelumbo nucifera HOM05D004724 ORTHO05D005734 3.5e-126 455.7 412 60.4
QL03p072513 Quercus lobata HOM05D004724 ORTHO05D005734 7.8e-126 454.5 413 60.0
vmacro16381 Vaccinium macrocarpon HOM05D004724 ORTHO05D005734 3.0e-125 452.6 510 52.9
CiPaw.05G125900 Carya illinoinensis HOM05D004724 ORTHO05D005734 1.9e-124 449.9 412 59.2
Migut.E00049 Erythranthe guttata HOM05D004724 ORTHO05D005734 7.3e-124 448.0 417 57.8
Dinv15029 Davidia involucrata HOM05D004724 ORTHO05D005734 2.1e-123 446.4 366 66.9
Dinv34076 Davidia involucrata HOM05D004724 ORTHO05D005734 2.1e-123 446.4 366 66.9
MSTRG.13448 Avicennia marina HOM05D004724 ORTHO05D005734 1.1e-122 444.1 422 59.2
Sc04g0007630 Simmondsia chinensis HOM05D004724 ORTHO05D005734 1.8e-122 443.4 415 58.3
Oeu048146.1 Olea europaea HOM05D004724 ORTHO05D005734 6.8e-122 441.4 417 59.7
MD16G1061800 Malus domestica HOM05D004724 ORTHO05D005734 8.9e-122 441.0 414 59.7
MD13G1063400 Malus domestica HOM05D004724 ORTHO05D005734 1.5e-121 440.3 414 58.9
HanXRQChr08g0211831 Helianthus annuus HOM05D004724 ORTHO05D005734 4.4e-121 438.7 417 58.3
Rhsim12G0135900 Rhododendron simsii HOM05D004724 ORTHO05D005734 5.8e-121 438.3 323 71.8
Eucgr.B03160 Eucalyptus grandis HOM05D004724 ORTHO05D005734 9.3e-119 431.0 414 58.0
Thecc.02G332500 Theobroma cacao HOM05D004724 ORTHO05D005734 2.3e-117 426.4 413 57.1
THA.LOC104822013 Tarenaya hassleriana HOM05D004724 ORTHO05D005734 3.9e-117 425.6 412 56.6
TWI31G1115 Tripterygium wilfordii HOM05D004724 ORTHO05D005734 3.9e-117 425.6 413 56.9
PGR102G0250 Punica granatum HOM05D004724 ORTHO05D005734 2.5e-116 422.9 414 56.3
Haze_11916 Corylus avellana HOM05D004724 ORTHO05D005734 4.3e-116 422.2 392 58.9
TWI79G1393 Tripterygium wilfordii HOM05D004724 ORTHO05D005734 4.8e-115 418.7 412 57.3
TAR622G0524 Trochodendron aralioides HOM05D004724 ORTHO05D005734 7.6e-113 411.4 412 56.8
Lalb_Chr10g0098781 Lupinus albus HOM05D004724 ORTHO05D005734 2.2e-112 409.8 414 55.6
Manes.01G028400 Manihot esculenta HOM05D004724 ORTHO05D005734 2.2e-112 409.8 414 53.4
RcHm_v2.0_Chr4g0438491 Rosa chinensis HOM05D004724 ORTHO05D005734 2.2e-112 409.8 415 54.2
TAR374G1337 Trochodendron aralioides HOM05D004724 ORTHO05D005734 2.9e-112 409.5 412 57.0
MELO3C011422.2 Cucumis melo HOM05D004724 ORTHO05D005734 1.1e-111 407.5 412 55.3
Nitab4.5_0004171g0040 Nicotiana tabacum HOM05D004724 ORTHO05D005734 1.1e-111 407.5 426 52.6
Gorai.005G145100 Gossypium raimondii HOM05D004724 ORTHO05D005734 1.4e-111 407.1 413 55.0
Gohir.D02G129300 Gossypium hirsutum HOM05D004724 ORTHO05D005734 3.2e-111 406.0 413 54.7
Nitab4.5_0000231g0420 Nicotiana tabacum HOM05D004724 ORTHO05D005734 4.2e-111 405.6 419 52.7
Gohir.A03G104200 Gossypium hirsutum HOM05D004724 ORTHO05D005734 7.1e-111 404.8 414 55.3
Lsat_1_v5_gn_8_47681 Lactuca sativa HOM05D004724 ORTHO05D005734 2.7e-110 402.9 373 59.5
Glyma.01G058200 Glycine max HOM05D004724 ORTHO05D005734 4.6e-110 402.1 415 53.5
PGSC0003DMG400028320 Solanum tuberosum HOM05D004724 ORTHO05D005734 6.0e-110 401.7 426 50.7
SalBow2G3108 Salvia bowleyana HOM05D004724 ORTHO05D005734 7.9e-110 401.4 427 53.2
CARHR025500 Cardamine hirsuta HOM05D004724 ORTHO05D005734 1.3e-109 400.6 413 54.0
CsaV3_6G033660 Cucumis sativus L. HOM05D004724 ORTHO05D005734 1.3e-109 400.6 412 54.4
Aa31LG7G8630 Aethionema arabicum HOM05D004724 ORTHO05D005734 3.9e-109 399.1 409 52.8
Sopen05g007210 Solanum pennellii HOM05D004724 ORTHO05D005734 3.9e-109 399.1 426 50.2
Peaxi162Scf00175g00020 Petunia axillaris HOM05D004724 ORTHO05D005734 5.1e-109 398.7 427 51.1
MBI16_g13587_MAGBIO Magnolia biondii HOM05D004724 ORTHO05D005734 6.6e-109 398.3 412 55.1
AT1G26460 Arabidopsis thaliana HOM05D004724 ORTHO05D005734 5.6e-108 395.2 419 52.7
Lj2g0005374 Lotus japonicus HOM05D004724 ORTHO05D005734 7.4e-108 394.8 414 52.4
Potri.010G159100 Populus trichocarpa HOM05D004724 ORTHO05D005734 2.8e-107 392.9 418 54.1
TPR.G24471 Trifolium pratense HOM05D004724 ORTHO05D005734 3.6e-107 392.5 414 53.6
Glyma.02G116000 Glycine max HOM05D004724 ORTHO05D005734 6.2e-107 391.7 411 53.0
PSO017G2003 Papaver somniferum HOM05D004724 ORTHO05D005734 6.2e-107 391.7 412 52.4
Atru.chr11.1649 Acer truncatum HOM05D004724 ORTHO05D005734 1.4e-106 390.6 415 53.3
PSO478G4140 Papaver somniferum HOM05D004724 ORTHO05D005734 1.8e-106 390.2 412 52.2
CAN.G616.33 Capsicum annuum HOM05D004724 ORTHO05D005734 2.4e-106 389.8 428 49.1
BolC5t31188H Brassica oleracea HOM05D004724 ORTHO05D005734 6.9e-106 388.3 422 51.2
Ca_04959_v3 Cicer arietinum L. HOM05D004724 ORTHO05D005734 6.9e-106 388.3 414 53.6
Cfa008886 Carpinus fangiana HOM05D004724 ORTHO05D005734 1.2e-105 387.5 413 53.3
AUR62007926 Chenopodium quinoa HOM05D004724 ORTHO05D005734 1.2e-105 387.5 413 54.0
ECA233G5398 Erigeron canadensis HOM05D004724 ORTHO05D005734 2.6e-105 386.3 376 55.6
AUR62003111 Chenopodium quinoa HOM05D004724 ORTHO05D005734 3.4e-105 386.0 413 53.5
Prupe.1G286100 Prunus persica HOM05D004724 ORTHO05D005734 2.2e-104 383.3 414 52.9
FvH4_4g30160 Fragaria vesca HOM05D004724 ORTHO05D005734 4.9e-104 382.1 416 52.4
SalBow8G1172 Salvia bowleyana HOM05D004724 ORTHO05D005734 4.9e-104 382.1 454 48.9
ClCG08G010390 Citrullus lanatus HOM05D004724 ORTHO05D005734 1.1e-103 380.9 412 51.7
SGA_v2.0_scaffold16G07777 Striga asiatica HOM05D004724 ORTHO05D005734 5.5e-103 378.6 417 52.3
Ciclev10031249m.g Citrus clementina HOM05D004724 ORTHO05D005734 9.3e-103 377.9 414 51.7
EL10Ac6g14982 Beta vulgaris HOM05D004724 ORTHO05D005734 4.6e-102 375.6 414 51.7
Migut.L01196 Erythranthe guttata HOM05D004724 ORTHO05D005734 4.6e-102 375.6 417 52.5
Sed0014019 Sechium edule HOM05D004724 ORTHO05D005734 4.6e-102 375.6 413 51.6
Medtr5g044270 Medicago truncatula HOM05D004724 ORTHO05D005734 6.0e-102 375.2 414 50.7
Sabra10G0120800 Salix brachista HOM05D004724 ORTHO05D005734 1.0e-101 374.4 418 51.4
AL1G39280 Arabidopsis lyrata HOM05D004724 ORTHO05D005734 6.7e-101 371.7 419 50.8
CANSAT64G0483 Cannabis sativa HOM05D004724 ORTHO05D005734 6.7e-101 371.7 419 51.1
Carub.0001s2456 Capsella rubella HOM05D004724 ORTHO05D005734 1.5e-100 370.5 419 50.6
Cc11_g12080 Coffea canephora HOM05D004724 ORTHO05D005734 2.5e-100 369.8 417 50.8
ATR0064G103 Amborella trichopoda HOM05D004724 ORTHO05D005734 1.6e-99 367.1 373 54.7
C05p24540 Brassica napus HOM05D004724 ORTHO05D005734 4.8e-99 365.5 422 48.8
THA.LOC104805036 Tarenaya hassleriana HOM05D004724 ORTHO05D005734 4.8e-99 365.5 412 49.5
arahy.Tifrunner.gnm1.ann1.06XI8G Arachis hypogaea HOM05D004724 ORTHO05D005734 6.2e-99 365.2 414 51.0
A09p39880 Brassica napus HOM05D004724 ORTHO05D005734 6.2e-99 365.2 422 48.6
BraA09t39487Z Brassica rapa HOM05D004724 ORTHO05D005734 6.2e-99 365.2 422 48.6
arahy.Tifrunner.gnm1.ann1.CTA0UQ Arachis hypogaea HOM05D004724 ORTHO05D005734 3.1e-98 362.8 413 50.8
Thhalv10007071m.g Eutrema salsugineum HOM05D004724 ORTHO05D005734 3.1e-98 362.8 415 50.4
DCAR_027471 Daucus carota HOM05D004724 ORTHO05D005734 9.0e-98 361.3 431 49.2
FAN22G1297 Fragaria x ananassa HOM05D004724 ORTHO05D005734 1.2e-97 360.9 422 49.8
FAN12G2645 Fragaria x ananassa HOM05D004724 ORTHO05D005734 1.5e-97 360.5 416 50.7
COL.COLO4_27896 Corchorus olitorius HOM05D004724 ORTHO05D005734 1.1e-95 354.4 412 49.5
Phvul.003G043100 Phaseolus vulgaris HOM05D004724 ORTHO05D005734 6.0e-94 348.6 415 49.2
Psat2g129640 Pisum sativum HOM05D004724 ORTHO05D005734 1.8e-93 347.1 273 65.9
FAN07G2095 Fragaria x ananassa HOM05D004724 ORTHO05D005734 1.3e-91 340.9 422 48.3
HPP92_009526 Vanilla planifolia HOM05D004724 ORTHO05D005734 1.3e-91 340.9 440 46.4
HPP92_009555 Vanilla planifolia HOM05D004724 ORTHO05D005734 6.3e-91 338.6 440 46.1
FAN17G2607 Fragaria x ananassa HOM05D004724 ORTHO05D005734 2.6e-89 333.2 432 47.0
Aqoxy3G03611 Aquilegia oxysepala HOM05D004724 ORTHO05D005734 1.3e-88 330.9 374 50.0
SGA_v2.0_scaffold287G47167 Striga asiatica HOM05D004724 ORTHO05D005734 6.1e-86 322.0 283 60.8
Hund25184 Selenicereus undatus HOM05D004724 ORTHO05D005734 3.9e-85 319.3 380 48.9
Zm00001eb108470 Zea mays HOM05D004724 ORTHO05D005734 3.1e-82 309.7 371 46.6
CiPaw.06G092100 Carya illinoinensis HOM05D004724 ORTHO05D005734 4.1e-82 309.3 404 46.8
Os07g0599000 Oryza sativa ssp. japonica HOM05D004724 ORTHO05D005734 6.9e-82 308.5 367 46.6
CDE04G2698 Ceratophyllum demersum HOM05D004724 ORTHO05D005734 1.3e-80 304.3 422 42.4
VMungo1215G0095 Vigna mungo HOM05D004724 ORTHO05D005734 2.2e-80 303.5 415 45.3
Zm00001eb326730 Zea mays HOM05D004724 ORTHO05D005734 3.2e-79 299.7 366 45.6
Solyc05g012390.4 Solanum lycopersicum HOM05D004724 ORTHO05D005734 5.7e-76 288.9 325 47.7
DCAR_027465 Daucus carota HOM05D004724 ORTHO05D005734 1.0e-72 278.1 338 49.1
SHI32884 Sapria himalayana HOM05D004724 ORTHO05D005734 1.8e-69 267.3 250 56.4
GSVIVG01028487001 Vitis vinifera HOM05D004724 ORTHO05D005734 9.4e-63 245.0 226 58.8
SEGI_02789 Sequoiadendron giganteum HOM05D004724 ORTHO05D005734 8.0e-62 241.9 236 54.2
GSVIVG01021735001 Vitis vinifera HOM05D004724 ORTHO05D005734 4.4e-60 236.1 226 58.0
EL10Ac5g12464 Beta vulgaris HOM05D004724 ORTHO05D005734 1.4e-58 231.1 255 51.4
Ah.02g126900 Amaranthus hybridus HOM05D004724 ORTHO05D005734 1.1e-50 204.9 235 48.9
CDE07G1937 Ceratophyllum demersum HOM05D004724 ORTHO05D005734 3.0e-45 186.8 239 45.2
SHI32782 Sapria himalayana HOM05D004724 ORTHO05D005734 3.4e-44 183.3 418 32.8
Cpa.g.sc1.117 Carica papaya HOM05D004724 ORTHO05D005734 1.4e-42 177.9 206 50.5
Mapoly0002s0313 Marchantia polymorpha HOM05D004724 ORTHO05D005734 6.8e-37 159.1 364 30.2
Actinidia32302 Actinidia chinensis HOM05D004724 ORTHO05D005734 1.7e-35 154.5 135 64.4
AagrBONN_evm.TU.Sc2ySwM_117.2858 Anthoceros agrestis HOM05D004724 ORTHO05D005734 6.4e-35 152.5 363 29.2
GSVIVG01009940001 Vitis vinifera HOM05D004724 ORTHO05D005734 1.1e-34 151.8 98 73.5
SHI32882 Sapria himalayana HOM05D004724 ORTHO05D005734 1.2e-28 131.7 159 47.8
Actinidia32301 Actinidia chinensis HOM05D004724 ORTHO05D005734 3.7e-27 126.7 89 70.8
Pp3c14_20030 Physcomitrium patens HOM05D004724 ORTHO05D005734 1.9e-23 114.4 379 25.6
Pp3c1_28760 Physcomitrium patens HOM05D004724 ORTHO05D005734 2.5e-23 114.0 381 23.6
Medtr6g024415 Medicago truncatula HOM05D004724 ORTHO05D005734 1.2e-22 111.7 148 45.9
CBR_g55790 Chara braunii HOM05D004724 ORTHO05D005734 1.9e-18 97.8 203 30.0
Nitab4.5_0011966g0020 Nicotiana tabacum HOM05D004724 ORTHO05D005734 1.2e-17 95.1 141 39.7
Actinidia32300 Actinidia chinensis HOM05D004724 ORTHO05D007268 3.2e-10 70.5 121 39.7
Ah.02g126910 Amaranthus hybridus HOM05D004724 ORTHO05D005734 1.7e-08 64.7 107 38.3
Hma1.2p1_0477F.1_g160970 Hydrangea macrophylla HOM05D004724 ORTHO05D005734 2.3e-08 64.3 43 65.1
Hma1.2p1_1953F.1_g308830 Hydrangea macrophylla HOM05D004724 ORTHO05D005734 2.3e-08 64.3 43 65.1
Gohir.D12G165066 Gossypium hirsutum HOM05D004724 ORTHO05D005734 3.9e-08 63.5 55 54.5
Nn4g24499 Nelumbo nucifera HOM05D000723 ORTHO05D278618 1.6e-06 58.2 93 39.8
Hma1.2p1_0820F.1_g223970 Hydrangea macrophylla HOM05D004724 ORTHO05D005734 2.1e-06 57.8 37 73.0


User provided reference genes

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