Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0034177 Camellia sinensis var. sinensis HOM05D005304 ORTHO05D004438 3.8e-54 214.5 104 100.0
CSS0028161 Camellia sinensis var. sinensis HOM05D005304 ORTHO05D004438 1.7e-22 109.4 97 62.9
Potri.009G003400 Populus trichocarpa HOM05D005304 ORTHO05D004438 4.3e-18 94.7 98 54.1
CiPaw.14G106000 Carya illinoinensis HOM05D005304 ORTHO05D004438 5.3e-16 87.8 103 48.5
Prupe.6G114400 Prunus persica HOM05D005304 ORTHO05D004438 2.0e-15 85.9 82 51.2
Manes.07G093500 Manihot esculenta HOM05D005304 ORTHO05D004438 4.5e-15 84.7 68 61.8
Manes.11G153500 Manihot esculenta HOM05D005304 ORTHO05D004438 1.0e-14 83.6 92 48.9
QL01p014739 Quercus lobata HOM05D005304 ORTHO05D004438 1.3e-14 83.2 95 49.5
TAR623G1332 Trochodendron aralioides HOM05D005304 ORTHO05D004438 1.7e-14 82.8 73 56.2
CiPaw.13G144100 Carya illinoinensis HOM05D005304 ORTHO05D004438 3.8e-14 81.6 99 48.5
TAR369G0323 Trochodendron aralioides HOM05D001401 ORTHO05D002222 3.8e-14 81.6 66 62.1
TAR636G3524 Trochodendron aralioides HOM05D005304 ORTHO05D004438 3.8e-14 81.6 83 50.6
Potri.008G029600 Populus trichocarpa HOM05D005304 ORTHO05D004438 6.5e-14 80.9 76 55.3
PGR119G0321 Punica granatum HOM05D005304 ORTHO05D004438 1.1e-13 80.1 86 53.5
Sabra08G0019800 Salix brachista HOM05D005304 ORTHO05D004438 2.5e-13 79.0 60 60.0
Aqoxy2G01602 Aquilegia oxysepala HOM05D005304 ORTHO05D004438 3.2e-13 78.6 70 57.1
Duzib168G0406 Durio zibethinus HOM05D005304 ORTHO05D004438 3.2e-13 78.6 59 62.7
Manes.04G012000 Manihot esculenta HOM05D005304 ORTHO05D004438 3.2e-13 78.6 106 44.3
Ciclev10029845m.g Citrus clementina HOM05D005304 ORTHO05D004438 4.2e-13 78.2 90 51.1
TWI79G0532 Tripterygium wilfordii HOM05D005304 ORTHO05D004438 4.2e-13 78.2 93 48.4
QL08p052941 Quercus lobata HOM05D005304 ORTHO05D004438 5.5e-13 77.8 68 57.4
Lsat_1_v5_gn_8_22700 Lactuca sativa HOM05D005304 ORTHO05D004438 7.2e-13 77.4 83 51.8
Cfa001771 Carpinus fangiana HOM05D005304 ORTHO05D004438 1.2e-12 76.6 59 66.1
TAR633G0523 Trochodendron aralioides HOM05D005304 ORTHO05D004438 1.2e-12 76.6 59 61.0
CSS0003867 Camellia sinensis var. sinensis HOM05D017072 ORTHO05D004438 1.6e-12 76.3 58 63.8
Eucgr.J00398 Eucalyptus grandis HOM05D005304 ORTHO05D004438 3.6e-12 75.1 120 44.2
Thecc.09G296200 Theobroma cacao HOM05D005304 ORTHO05D004438 3.6e-12 75.1 59 61.0
CiPaw.01G264700 Carya illinoinensis HOM05D005304 ORTHO05D004438 6.1e-12 74.3 57 63.2
Nn6g35176 Nelumbo nucifera HOM05D005304 ORTHO05D004438 7.9e-12 73.9 90 46.7
Potri.010G231600 Populus trichocarpa HOM05D005304 ORTHO05D004438 7.9e-12 73.9 107 46.7
Duzib150G0717 Durio zibethinus HOM05D005304 ORTHO05D004438 1.0e-11 73.6 72 52.8
RcHm_v2.0_Chr5g0056381 Rosa chinensis HOM05D025255 ORTHO05D004438 1.4e-11 73.2 100 44.0
QL03p021677 Quercus lobata HOM05D005304 ORTHO05D004438 1.8e-11 72.8 57 59.6
Haze_16785 Corylus avellana HOM05D005304 ORTHO05D004438 2.3e-11 72.4 59 62.7
Sabra10G0179600 Salix brachista HOM05D005304 ORTHO05D004438 2.3e-11 72.4 60 53.3
CiPaw.02G169800 Carya illinoinensis HOM05D005304 ORTHO05D004438 3.0e-11 72.0 67 56.7
FAN21G1648 Fragaria x ananassa HOM05D025255 ORTHO05D004438 3.9e-11 71.6 58 62.1
Gorai.009G089100 Gossypium raimondii HOM05D005304 ORTHO05D004438 5.1e-11 71.2 107 42.1
Gohir.A05G084500 Gossypium hirsutum HOM05D005304 ORTHO05D004438 6.7e-11 70.9 108 41.7
Gohir.D05G087300 Gossypium hirsutum HOM05D005304 ORTHO05D004438 6.7e-11 70.9 72 52.8
Oeu059829.1 Olea europaea HOM05D005304 ORTHO05D004438 8.8e-11 70.5 75 46.7
Nn2g13894 Nelumbo nucifera HOM05D005304 ORTHO05D004438 1.1e-10 70.1 115 44.3
QL03p011649 Quercus lobata HOM05D005304 ORTHO05D004438 1.1e-10 70.1 57 57.9
Gohir.D07G109600 Gossypium hirsutum HOM05D005304 ORTHO05D004438 1.5e-10 69.7 57 59.6
PGR102G2181 Punica granatum HOM05D005304 ORTHO05D004438 1.5e-10 69.7 82 46.3
FAN16G1536 Fragaria x ananassa HOM05D025255 ORTHO05D004438 2.0e-10 69.3 58 60.3
Gohir.A07G105600 Gossypium hirsutum HOM05D005304 ORTHO05D004438 2.0e-10 69.3 57 59.6
Duzib114G0655 Durio zibethinus HOM05D005304 ORTHO05D004438 3.3e-10 68.6 80 43.8
Lsat_1_v5_gn_9_70641 Lactuca sativa HOM05D005304 ORTHO05D004438 3.3e-10 68.6 63 52.4
Potri.001G212300 Populus trichocarpa HOM05D005304 ORTHO05D004438 3.3e-10 68.6 131 38.9
FvH4_3g30440 Fragaria vesca HOM05D025255 ORTHO05D004438 4.3e-10 68.2 82 47.6
FAN11G2118 Fragaria x ananassa HOM05D025255 ORTHO05D004438 4.3e-10 68.2 82 47.6
Manes.10G053200 Manihot esculenta HOM05D005304 ORTHO05D004438 4.3e-10 68.2 69 55.1
Atru.chr3.3495 Acer truncatum HOM05D005304 ORTHO05D004438 5.7e-10 67.8 101 48.5
Duzib128G0830 Durio zibethinus HOM05D005304 ORTHO05D004438 5.7e-10 67.8 78 46.2
Glyma.20G190800 Glycine max HOM05D005304 ORTHO05D004438 5.7e-10 67.8 84 40.5
Rhsim03G0110900 Rhododendron simsii HOM05D005304 ORTHO05D004438 5.7e-10 67.8 108 45.4
Prupe.2G095100 Prunus persica HOM05D005304 ORTHO05D004438 7.4e-10 67.4 66 53.0
Oeu032435.1 Olea europaea HOM05D005304 ORTHO05D004438 9.7e-10 67.0 81 45.7
FAN10G3090 Fragaria x ananassa HOM05D005304 ORTHO05D004438 2.2e-09 65.9 77 46.8
Manes.10G053300 Manihot esculenta HOM05D005304 ORTHO05D004438 2.2e-09 65.9 68 54.4
Oeu026982.1 Olea europaea HOM05D047474 ORTHO05D004438 2.2e-09 65.9 108 38.9
FvH4_7g06790 Fragaria vesca HOM05D005304 ORTHO05D004438 2.8e-09 65.5 77 46.8
FAN06G1004 Fragaria x ananassa HOM05D005304 ORTHO05D004438 2.8e-09 65.5 77 46.8
Eucgr.J01032 Eucalyptus grandis HOM05D005304 ORTHO05D004438 3.7e-09 65.1 56 55.4
Potri.010G231700 Populus trichocarpa HOM05D005304 ORTHO05D004438 3.7e-09 65.1 73 52.1
PGR044G1405 Punica granatum HOM05D005304 ORTHO05D004438 3.7e-09 65.1 59 50.8
Atru.chr12.921 Acer truncatum HOM05D005304 ORTHO05D004438 4.8e-09 64.7 64 59.4
FAN10G0320 Fragaria x ananassa HOM05D005304 ORTHO05D004438 6.3e-09 64.3 74 47.3
TPR.G31694 Trifolium pratense HOM05D014522 ORTHO05D004438 6.3e-09 64.3 113 40.7
Gorai.001G117700 Gossypium raimondii HOM05D005304 ORTHO05D004438 8.2e-09 63.9 57 56.1
Phvul.007G141600 Phaseolus vulgaris HOM05D005304 ORTHO05D004438 8.2e-09 63.9 59 55.9
ClCG05G021460 Citrullus lanatus HOM05D005304 ORTHO05D004438 1.1e-08 63.5 64 53.1
Cc02_g10500 Coffea canephora HOM05D005304 ORTHO05D004438 1.1e-08 63.5 86 45.3
FAN01G2164 Fragaria x ananassa HOM05D005304 ORTHO05D004438 1.1e-08 63.5 77 45.5
Duzib128G0918 Durio zibethinus HOM05D005304 ORTHO05D004438 1.4e-08 63.2 78 46.2
RcHm_v2.0_Chr1g0336411 Rosa chinensis HOM05D005304 ORTHO05D004438 1.4e-08 63.2 80 46.2
VMungo0720G0262 Vigna mungo HOM05D005304 ORTHO05D004438 1.4e-08 63.2 64 51.6
VMungo1127G0478 Vigna mungo HOM05D014522 ORTHO05D004438 1.4e-08 63.2 74 48.6
FAN03G1417 Fragaria x ananassa HOM05D005304 ORTHO05D004438 1.8e-08 62.8 77 45.5
Gohir.D01G118400 Gossypium hirsutum HOM05D005304 ORTHO05D004438 2.4e-08 62.4 111 35.1
Gorai.002G144400 Gossypium raimondii HOM05D005304 ORTHO05D004438 2.4e-08 62.4 111 35.1
Oeu026980.1 Olea europaea HOM05D047474 ORTHO05D004438 3.1e-08 62.0 108 38.0
TWI38G0392 Tripterygium wilfordii HOM05D005304 ORTHO05D004438 3.1e-08 62.0 69 49.3
FAN02G4580 Fragaria x ananassa HOM05D005304 ORTHO05D004438 4.1e-08 61.6 76 46.1
Lalb_Chr02g0151151 Lupinus albus HOM05D005304 ORTHO05D004438 4.1e-08 61.6 67 50.7
TPR.G37843 Trifolium pratense HOM05D005304 ORTHO05D004438 4.1e-08 61.6 56 58.9
Ca_10460_v3 Cicer arietinum L. HOM05D005304 ORTHO05D004438 5.3e-08 61.2 59 55.9
ClCG08G007940 Citrullus lanatus HOM05D005304 ORTHO05D004438 5.3e-08 61.2 65 47.7
CsaV3_5G035790 Cucumis sativus L. HOM05D005304 ORTHO05D004438 5.3e-08 61.2 75 41.3
FAN12G4274 Fragaria x ananassa HOM05D005304 ORTHO05D004438 5.3e-08 61.2 76 46.1
Glyma.10G199500 Glycine max HOM05D005304 ORTHO05D004438 5.3e-08 61.2 58 50.0
Sabra08G0019700 Salix brachista HOM05D005304 ORTHO05D004438 5.3e-08 61.2 91 48.4
Sed0018085 Sechium edule HOM05D005304 ORTHO05D004438 5.3e-08 61.2 65 46.2
MELO3C019852.2 Cucumis melo HOM05D005304 ORTHO05D004438 6.9e-08 60.8 65 46.2
CsaV3_2G032750 Cucumis sativus L. HOM05D005304 ORTHO05D004438 6.9e-08 60.8 65 46.2
Lalb_Chr06g0170051 Lupinus albus HOM05D005304 ORTHO05D004438 6.9e-08 60.8 66 48.5
Sopen06g031160 Solanum pennellii HOM05D005304 ORTHO05D004438 6.9e-08 60.8 69 46.4
Gohir.A01G128800 Gossypium hirsutum HOM05D005304 ORTHO05D004438 9.1e-08 60.5 111 34.2
Sed0010031 Sechium edule HOM05D005304 ORTHO05D004438 9.1e-08 60.5 96 39.6
Eucgr.B03916 Eucalyptus grandis HOM05D005304 ORTHO05D004438 1.2e-07 60.1 85 42.4
SalBow4G2705 Salvia bowleyana HOM05D005304 ORTHO05D004438 1.2e-07 60.1 57 49.1
Gohir.D04G021300 Gossypium hirsutum HOM05D005304 ORTHO05D004438 1.5e-07 59.7 63 46.0
CANSAT56G0274 Cannabis sativa HOM05D005304 ORTHO05D004438 2.0e-07 59.3 75 46.7
MELO3C035553.2 Cucumis melo HOM05D026992 ORTHO05D004438 2.0e-07 59.3 66 45.5
Lalb_Chr19g0129331 Lupinus albus HOM05D005304 ORTHO05D004438 2.0e-07 59.3 54 50.0
SHI54636 Sapria himalayana HOM05D005304 ORTHO05D004438 2.0e-07 59.3 75 40.0
Ciclev10033091m.g Citrus clementina HOM05D005304 ORTHO05D004438 2.6e-07 58.9 77 41.6
MELO3C012381.2 Cucumis melo HOM05D005304 ORTHO05D004438 2.6e-07 58.9 57 47.4
Medtr1g090837 Medicago truncatula HOM05D005304 ORTHO05D004438 2.6e-07 58.9 76 46.1
Nitab4.5_0000107g0230 Nicotiana tabacum HOM05D005304 ORTHO05D004438 2.6e-07 58.9 56 57.1
Psat6g173960 Pisum sativum HOM05D005304 ORTHO05D004438 2.6e-07 58.9 59 54.2
ClCG01G013950 Citrullus lanatus HOM05D026992 ORTHO05D004438 3.4e-07 58.5 83 41.0
Migut.F01894 Erythranthe guttata HOM05D005304 ORTHO05D004438 3.4e-07 58.5 90 44.4
Gorai.012G025400 Gossypium raimondii HOM05D005304 ORTHO05D004438 3.4e-07 58.5 63 46.0
PGR044G0041 Punica granatum HOM05D005304 ORTHO05D004438 3.4e-07 58.5 57 50.9
Sed0009329 Sechium edule HOM05D005304 ORTHO05D004438 3.4e-07 58.5 63 46.0
Thecc.10G090600 Theobroma cacao HOM05D005304 ORTHO05D004438 3.4e-07 58.5 62 48.4
Cpa.g.sc128.74 Carica papaya HOM05D005304 ORTHO05D004438 4.5e-07 58.2 100 46.0
Lj5g0009089 Lotus japonicus HOM05D005304 ORTHO05D004438 4.5e-07 58.2 80 42.5
CsaV3_1G014250 Cucumis sativus L. HOM05D026992 ORTHO05D004438 7.7e-07 57.4 52 57.7
COL.COLO4_32872 Corchorus olitorius HOM05D005304 ORTHO05D004438 1.0e-06 57.0 74 44.6
Lalb_Chr03g0027791 Lupinus albus HOM05D014522 ORTHO05D004438 2.2e-06 55.8 84 39.3
Medtr4g056580 Medicago truncatula HOM05D014522 ORTHO05D004438 2.2e-06 55.8 74 39.2
Gohir.A05G393600 Gossypium hirsutum HOM05D005304 ORTHO05D004438 2.9e-06 55.5 63 44.4
Sed0006013 Sechium edule HOM05D005304 ORTHO05D004438 2.9e-06 55.5 64 45.3
Eucgr.J01033 Eucalyptus grandis HOM05D005304 ORTHO05D004438 3.8e-06 55.1 100 41.0
Lalb_Chr03g0036331 Lupinus albus HOM05D005304 ORTHO05D004438 3.8e-06 55.1 75 41.3
Nitab4.5_0000593g0370 Nicotiana tabacum HOM05D005304 ORTHO05D004438 5.0e-06 54.7 72 43.1
MSTRG.27507 Avicennia marina HOM05D005304 ORTHO05D004438 6.5e-06 54.3 53 49.1
CAN.G612.11 Capsicum annuum HOM05D005304 ORTHO05D004438 6.5e-06 54.3 75 45.3
Cfa010131 Carpinus fangiana HOM05D005304 ORTHO05D004438 6.5e-06 54.3 46 56.5
Hma1.2p1_0454F.1_g156290 Hydrangea macrophylla HOM05D005304 ORTHO05D004438 6.5e-06 54.3 70 38.6
Lj3g0006440 Lotus japonicus HOM05D014522 ORTHO05D004438 6.5e-06 54.3 91 37.4
Haze_23519 Corylus avellana HOM05D005304 ORTHO05D004438 8.5e-06 53.9 146 32.2
Thhalv10009156m.g Eutrema salsugineum HOM05D010843 ORTHO05D012975 8.5e-06 53.9 71 45.1
SalBow6G1975 Salvia bowleyana HOM05D005304 ORTHO05D004438 8.5e-06 53.9 66 48.5
TWI63G0695 Tripterygium wilfordii HOM05D005304 ORTHO05D004438 8.5e-06 53.9 69 46.4


User provided reference genes

Program Settings