Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0034144 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 1.7e-41 172.2 84 100.0
CSS0016207 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 1.3e-33 146.0 77 93.5
CSS0022995 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 4.3e-32 141.0 84 85.7
Lj3A1035T53 Lonicera japonica HOM05D001860 ORTHO05D004922 1.2e-29 132.9 84 75.0
vmacro01268 Vaccinium macrocarpon HOM05D001860 ORTHO05D004922 2.9e-28 128.3 84 75.0
vmacro01267 Vaccinium macrocarpon HOM05D001860 ORTHO05D004922 3.7e-28 127.9 84 72.6
CiPaw.06G086900 Carya illinoinensis HOM05D001860 ORTHO05D004922 4.9e-28 127.5 83 72.3
Rhsim12G0064600 Rhododendron simsii HOM05D001860 ORTHO05D004922 8.3e-28 126.7 84 75.0
TAR629G3174 Trochodendron aralioides HOM05D001860 ORTHO05D004922 1.1e-27 126.3 83 74.7
Manes.05G104100 Manihot esculenta HOM05D001860 ORTHO05D004922 1.4e-27 125.9 83 73.5
Actinidia31905 Actinidia chinensis HOM05D001860 ORTHO05D004922 1.9e-27 125.6 80 77.5
Nn3g17288 Nelumbo nucifera HOM05D001860 ORTHO05D004922 7.0e-27 123.6 83 71.1
TWI31G0055 Tripterygium wilfordii HOM05D001860 ORTHO05D004922 7.0e-27 123.6 84 71.4
Sabra08G0066100 Salix brachista HOM05D001860 ORTHO05D004922 1.2e-26 122.9 83 74.7
QL03p068521 Quercus lobata HOM05D001860 ORTHO05D004922 2.7e-26 121.7 82 69.5
Atru.chr11.1760 Acer truncatum HOM05D001860 ORTHO05D004922 3.5e-26 121.3 83 69.9
Hma1.2p1_1079F.1_g254970 Hydrangea macrophylla HOM05D001860 ORTHO05D004922 4.6e-26 120.9 82 72.0
Ciclev10032245m.g Citrus clementina HOM05D001860 ORTHO05D004922 6.0e-26 120.6 83 68.7
Haze_11992 Corylus avellana HOM05D001860 ORTHO05D004922 6.0e-26 120.6 83 72.3
Sed0020595 Sechium edule HOM05D001860 ORTHO05D004922 1.0e-25 119.8 83 66.3
Cc11_g12800 Coffea canephora HOM05D001860 ORTHO05D004922 1.3e-25 119.4 84 70.2
MBI05_g10765_MAGBIO Magnolia biondii HOM05D001860 ORTHO05D004922 1.3e-25 119.4 83 68.7
Potri.008G088500 Populus trichocarpa HOM05D001860 ORTHO05D004922 1.3e-25 119.4 83 72.3
Os02g0744100 Oryza sativa ssp. japonica HOM05D001860 ORTHO05D004922 1.7e-25 119.0 83 67.5
GSVIVG01019959001 Vitis vinifera HOM05D001860 ORTHO05D004922 1.7e-25 119.0 83 71.1
Glyma.02G109300 Glycine max HOM05D001860 ORTHO05D004922 2.3e-25 118.6 83 65.1
MSTRG.7790 Avicennia marina HOM05D001860 ORTHO05D004922 3.0e-25 118.2 83 65.1
CAN.G771.16 Capsicum annuum HOM05D001860 ORTHO05D004922 3.0e-25 118.2 80 68.8
Aqoxy5G04114 Aquilegia oxysepala HOM05D001860 ORTHO05D004922 3.9e-25 117.9 83 66.3
SalBow2G3316 Salvia bowleyana HOM05D001860 ORTHO05D004922 3.9e-25 117.9 83 65.1
Ca_04822_v3 Cicer arietinum L. HOM05D001860 ORTHO05D004922 5.0e-25 117.5 83 66.3
Psat2g116760 Pisum sativum HOM05D001860 ORTHO05D004922 5.0e-25 117.5 84 64.3
Sopen06g035410 Solanum pennellii HOM05D001860 ORTHO05D004922 5.0e-25 117.5 80 71.2
ECA246G1483 Erigeron canadensis HOM05D001860 ORTHO05D004922 6.6e-25 117.1 83 65.1
Lsat_1_v5_gn_3_52040 Lactuca sativa HOM05D001860 ORTHO05D004922 6.6e-25 117.1 83 66.3
Cfa008963 Carpinus fangiana HOM05D001860 ORTHO05D004922 8.6e-25 116.7 81 70.4
Medtr5g041780 Medicago truncatula HOM05D001860 ORTHO05D004922 8.6e-25 116.7 83 65.1
Nitab4.5_0001044g0130 Nicotiana tabacum HOM05D001860 ORTHO05D004922 8.6e-25 116.7 80 70.0
CANSAT64G2732 Cannabis sativa HOM05D001860 ORTHO05D004922 1.1e-24 116.3 83 66.3
Lalb_Chr04g0255941 Lupinus albus HOM05D001860 ORTHO05D004922 1.1e-24 116.3 83 63.9
Nitab4.5_0006433g0040 Nicotiana tabacum HOM05D001860 ORTHO05D004922 1.5e-24 115.9 80 68.8
Migut.L01273 Erythranthe guttata HOM05D001860 ORTHO05D004922 1.9e-24 115.5 83 67.5
Eucgr.B03211 Eucalyptus grandis HOM05D001860 ORTHO05D004922 1.9e-24 115.5 83 66.3
Solyc06g084030.3 Solanum lycopersicum HOM05D001860 ORTHO05D004922 1.9e-24 115.5 80 68.8
CsaV3_5G032900 Cucumis sativus L. HOM05D001860 ORTHO05D004922 2.5e-24 115.2 83 62.7
Phvul.002G083300 Phaseolus vulgaris HOM05D001860 ORTHO05D004922 2.5e-24 115.2 83 62.7
HanXRQChr17g0545281 Helianthus annuus HOM05D001860 ORTHO05D004922 3.3e-24 114.8 83 65.1
Oeu028272.1 Olea europaea HOM05D001860 ORTHO05D004922 3.3e-24 114.8 83 66.3
DCAR_026253 Daucus carota HOM05D001016 ORTHO05D003396 4.3e-24 114.4 83 63.9
EL10Ac6g13236 Beta vulgaris HOM05D001860 ORTHO05D004922 5.6e-24 114.0 83 66.3
Lj2g0002858 Lotus japonicus HOM05D001860 ORTHO05D004922 5.6e-24 114.0 84 63.1
SGA_v2.0_scaffold172G38956 Striga asiatica HOM05D001860 ORTHO05D004922 5.6e-24 114.0 83 63.9
AUR62032811 Chenopodium quinoa HOM05D001860 ORTHO05D004922 7.3e-24 113.6 83 67.5
MD16G1070300 Malus domestica HOM05D001860 ORTHO05D004922 7.3e-24 113.6 83 63.9
Oeu028270.1 Olea europaea HOM05D001860 ORTHO05D004922 7.3e-24 113.6 83 65.1
PGSC0003DMG400020063 Solanum tuberosum HOM05D001860 ORTHO05D004922 9.5e-24 113.2 80 66.2
Peaxi162Scf01530g00038 Petunia axillaris HOM05D001860 ORTHO05D004922 1.2e-23 112.8 80 66.2
SEGI_35280 Sequoiadendron giganteum HOM05D001860 ORTHO05D004922 1.2e-23 112.8 83 66.3
CDE06G2440 Ceratophyllum demersum HOM05D001860 ORTHO05D004922 1.6e-23 112.5 84 63.1
QL03p068503 Quercus lobata HOM05D001860 ORTHO05D004922 1.6e-23 112.5 76 68.4
arahy.Tifrunner.gnm1.ann1.0UW6S5 Arachis hypogaea HOM05D001860 ORTHO05D004922 2.1e-23 112.1 83 62.7
MELO3C012111.2 Cucumis melo HOM05D001860 ORTHO05D004922 2.1e-23 112.1 83 61.4
FvH4_4g31120 Fragaria vesca HOM05D001860 ORTHO05D004922 2.1e-23 112.1 83 62.7
FAN12G1253 Fragaria x ananassa HOM05D001860 ORTHO05D004922 2.8e-23 111.7 82 62.2
QL03p068489 Quercus lobata HOM05D001860 ORTHO05D004922 2.8e-23 111.7 74 68.9
TPR.G36138 Trifolium pratense HOM05D001860 ORTHO05D004922 4.7e-23 110.9 83 63.9
Zm00001eb194590 Zea mays HOM05D001860 ORTHO05D004922 4.7e-23 110.9 83 62.7
FAN22G1600 Fragaria x ananassa HOM05D001860 ORTHO05D004922 8.1e-23 110.2 82 61.0
PSO017G0798 Papaver somniferum HOM05D001860 ORTHO05D004922 8.1e-23 110.2 83 66.3
PSO478G0757 Papaver somniferum HOM05D001860 ORTHO05D004922 8.1e-23 110.2 83 66.3
RcHm_v2.0_Chr4g0439511 Rosa chinensis HOM05D001860 ORTHO05D004922 8.1e-23 110.2 83 61.4
arahy.Tifrunner.gnm1.ann1.WF3EDY Arachis hypogaea HOM05D001860 ORTHO05D004922 1.1e-22 109.8 83 60.2
ATR0564G196 Amborella trichopoda HOM05D001860 ORTHO05D004922 1.4e-22 109.4 83 61.4
Thecc.02G343500 Theobroma cacao HOM05D001860 ORTHO05D004922 1.4e-22 109.4 82 65.9
Duzib248G0566 Durio zibethinus HOM05D001860 ORTHO05D004922 1.8e-22 109.0 82 62.2
FAN07G2810 Fragaria x ananassa HOM05D001860 ORTHO05D004922 1.8e-22 109.0 80 61.2
arahy.Tifrunner.gnm1.ann1.F2WL4X Arachis hypogaea HOM05D001860 ORTHO05D004922 2.3e-22 108.6 83 60.2
Hund25222 Selenicereus undatus HOM05D001860 ORTHO05D004922 2.3e-22 108.6 83 63.9
HPP92_016837 Vanilla planifolia HOM05D001860 ORTHO05D004922 4.0e-22 107.8 82 62.2
A07p31570 Brassica napus HOM05D001860 ORTHO05D004922 6.8e-22 107.1 85 64.7
BraA07t30786Z Brassica rapa HOM05D001860 ORTHO05D004922 6.8e-22 107.1 85 64.7
CsaV3_5G032890 Cucumis sativus L. HOM05D001860 ORTHO05D004922 6.8e-22 107.1 83 60.2
CDE04G1474 Ceratophyllum demersum HOM05D001860 ORTHO05D004922 1.2e-21 106.3 84 58.3
BcaB03g15478 Brassica carinata HOM05D001860 ORTHO05D004922 2.0e-21 105.5 85 63.5
Thhalv10018913m.g Eutrema salsugineum HOM05D001860 ORTHO05D004922 2.6e-21 105.1 85 62.4
Gorai.013G087000 Gossypium raimondii HOM05D001860 ORTHO05D004922 2.6e-21 105.1 82 62.2
BcaB03g14715 Brassica carinata HOM05D001860 ORTHO05D004922 4.4e-21 104.4 84 61.9
C06p36870 Brassica napus HOM05D000005 ORTHO05D042562 9.9e-21 103.2 85 63.5
Sp5g24640 Schrenkiella parvula HOM05D001860 ORTHO05D004922 9.9e-21 103.2 85 61.2
ClCG05G024130 Citrullus lanatus HOM05D001860 ORTHO05D004922 1.7e-20 102.4 75 66.7
Carub.0002s1616 Capsella rubella HOM05D001860 ORTHO05D004922 2.9e-20 101.7 84 58.3
THA.LOC104822184 Tarenaya hassleriana HOM05D001860 ORTHO05D004922 2.9e-20 101.7 84 61.9
BcaC08g45887 Brassica carinata HOM05D001860 ORTHO05D004922 4.9e-20 100.9 85 62.4
BolC6t38800H Brassica oleracea HOM05D000005 ORTHO05D042562 4.9e-20 100.9 85 62.4
Sp5g24620 Schrenkiella parvula HOM05D001860 ORTHO05D004922 6.4e-20 100.5 84 60.7
AL2G28650 Arabidopsis lyrata HOM05D001860 ORTHO05D004922 8.3e-20 100.1 84 58.3
Carub.0002s1617 Capsella rubella HOM05D001860 ORTHO05D004922 8.3e-20 100.1 85 60.0
THA.LOC104822045 Tarenaya hassleriana HOM05D001860 ORTHO05D004922 8.3e-20 100.1 84 60.7
A07p35830 Brassica napus HOM05D001860 ORTHO05D004922 1.1e-19 99.8 85 61.2
A07p35840 Brassica napus HOM05D001860 ORTHO05D004922 1.1e-19 99.8 85 61.2
C06p40340 Brassica napus HOM05D001860 ORTHO05D004922 1.1e-19 99.8 85 61.2
C06p40370 Brassica napus HOM05D001860 ORTHO05D004922 1.1e-19 99.8 85 61.2
BolC6t39396H Brassica oleracea HOM05D001860 ORTHO05D004922 1.1e-19 99.8 85 61.2
BolC6t39398H Brassica oleracea HOM05D001860 ORTHO05D004922 1.1e-19 99.8 85 61.2
BraA07t31169Z Brassica rapa HOM05D001860 ORTHO05D004922 1.1e-19 99.8 85 61.2
BraA07t31170Z Brassica rapa HOM05D001860 ORTHO05D004922 1.1e-19 99.8 85 61.2
AL2G28640 Arabidopsis lyrata HOM05D001860 ORTHO05D004922 1.4e-19 99.4 84 56.0
BcaC08g46388 Brassica carinata HOM05D001860 ORTHO05D004922 1.9e-19 99.0 85 58.8
BolC6t39394H Brassica oleracea HOM05D001482 ORTHO05D001499 1.9e-19 99.0 85 58.8
Carub.0002s1615 Capsella rubella HOM05D001860 ORTHO05D004922 1.9e-19 99.0 84 57.1
AT1G69526 Arabidopsis thaliana HOM05D001860 ORTHO05D004922 2.4e-19 98.6 85 60.0
BcaB03g14714 Brassica carinata HOM05D001860 ORTHO05D004922 2.4e-19 98.6 85 58.8
MELO3C012110.2 Cucumis melo HOM05D001860 ORTHO05D004922 2.4e-19 98.6 77 62.3
A07p35820 Brassica napus HOM05D001482 ORTHO05D001499 3.2e-19 98.2 85 58.8
A07p35850 Brassica napus HOM05D001860 ORTHO05D004922 3.2e-19 98.2 84 58.3
C06p40330 Brassica napus HOM05D001860 ORTHO05D004922 3.2e-19 98.2 84 58.3
Thhalv10019583m.g Eutrema salsugineum HOM05D001860 ORTHO05D004922 3.2e-19 98.2 85 58.8
BraA07t31168Z Brassica rapa HOM05D001482 ORTHO05D001499 4.1e-19 97.8 85 57.6
CARHR062480 Cardamine hirsuta HOM05D001860 ORTHO05D004922 4.1e-19 97.8 85 58.8
Sp5g24630 Schrenkiella parvula HOM05D001860 ORTHO05D004922 7.1e-19 97.1 82 54.9
BcaB03g14720 Brassica carinata HOM05D001860 ORTHO05D004922 9.2e-19 96.7 82 58.5
Sp5g24610 Schrenkiella parvula HOM05D001860 ORTHO05D004922 9.2e-19 96.7 85 58.8
AT1G69523 Arabidopsis thaliana HOM05D001860 ORTHO05D004922 1.2e-18 96.3 84 53.6
CARHR062450 Cardamine hirsuta HOM05D001860 ORTHO05D004922 1.6e-18 95.9 85 58.8
CARHR062460 Cardamine hirsuta HOM05D001860 ORTHO05D004922 1.6e-18 95.9 84 53.6
Aa31LG4G11250 Aethionema arabicum HOM05D001860 ORTHO05D004922 6.0e-18 94.0 84 53.6
BcaC08g46392 Brassica carinata HOM05D001860 ORTHO05D004922 6.0e-18 94.0 79 59.5
Carub.0002s1614 Capsella rubella HOM05D001860 ORTHO05D004922 6.0e-18 94.0 84 58.3
BcaC08g46390 Brassica carinata HOM05D001860 ORTHO05D004922 1.7e-17 92.4 56 73.2
BraA07t31171Z Brassica rapa HOM05D001860 ORTHO05D004922 5.1e-17 90.9 68 63.2
AagrBONN_evm.TU.Sc2ySwM_368.914 Anthoceros agrestis HOM05D001860 ORTHO05D004922 8.6e-17 90.1 80 56.2
BolC6t39399H Brassica oleracea HOM05D001860 ORTHO05D004922 1.1e-16 89.7 80 56.2
COL.COLO4_22943 Corchorus olitorius HOM05D001860 ORTHO05D004922 1.1e-16 89.7 101 49.5
THA.LOC104822044 Tarenaya hassleriana HOM05D001860 ORTHO05D004922 1.1e-16 89.7 115 44.3
AT1G69520 Arabidopsis thaliana HOM05D001860 ORTHO05D004922 2.5e-16 88.6 85 51.8
unitig_26.g10298 Utricularia gibba HOM05D001860 ORTHO05D004922 3.3e-16 88.2 106 45.3
Aa31LG4G11270 Aethionema arabicum HOM05D001860 ORTHO05D004922 3.6e-15 84.7 112 44.6
Pp3c24_6910 Physcomitrium patens HOM05D001860 ORTHO05D004922 3.6e-15 84.7 80 53.8
SMO239G0167 Selaginella moellendorffii HOM05D001860 ORTHO05D004922 4.7e-15 84.3 80 51.2
Mapoly0002s0191 Marchantia polymorpha HOM05D001860 ORTHO05D004922 6.2e-15 84.0 80 55.0
C06p40380 Brassica napus HOM05D001482 ORTHO05D001499 1.4e-14 82.8 116 43.1
C06p40360 Brassica napus HOM05D001860 ORTHO05D004922 3.1e-14 81.6 48 77.1
SMO137G0248 Selaginella moellendorffii HOM05D001860 ORTHO05D004922 2.4e-11 72.0 57 57.9
PRCOL_00003589 Prasinoderma coloniale HOM05D001860 ORTHO05D004922 1.7e-09 65.9 65 49.2
CDE08G0834 Ceratophyllum demersum HOM05D001860 ORTHO05D004922 1.1e-08 63.2 50 60.0
MCO03G556 Micromonas commoda HOM05D001860 ORTHO05D004922 1.1e-08 63.2 80 43.8
FAN17G3114 Fragaria x ananassa HOM05D001860 ORTHO05D004922 1.5e-08 62.8 51 54.9
Cre07.g342550 Chlamydomonas reinhardtii HOM05D001860 ORTHO05D004922 1.9e-08 62.4 58 50.0
PRCOL_00000783 Prasinoderma coloniale HOM05D001860 ORTHO05D004922 2.1e-07 58.9 60 48.3
MCO09G753 Micromonas commoda HOM05D001860 ORTHO05D004922 2.8e-07 58.5 45 55.6
Ah.02g129590 Amaranthus hybridus HOM05D001860 ORTHO05D004922 3.6e-07 58.2 49 57.1
CBR_g41443 Chara braunii HOM05D001860 ORTHO05D004922 4.7e-07 57.8 62 50.0


User provided reference genes

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