Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0034119 Camellia sinensis var. sinensis HOM05D004962 ORTHO05D006249 0.0e+00 1691.0 812 100.0
CSS0022436 Camellia sinensis var. sinensis HOM05D004962 ORTHO05D006249 0.0e+00 1663.3 823 97.6
Dinv16141 Davidia involucrata HOM05D004962 ORTHO05D006249 0.0e+00 1438.3 832 84.5
Rhsim09G0103500 Rhododendron simsii HOM05D004962 ORTHO05D006249 0.0e+00 1399.4 831 81.7
Lj3A879T38 Lonicera japonica HOM05D004962 ORTHO05D006249 0.0e+00 1360.1 830 78.6
QL01p010772 Quercus lobata HOM05D004962 ORTHO05D006249 0.0e+00 1359.4 836 77.5
Sabra10G0090000 Salix brachista HOM05D004962 ORTHO05D006249 0.0e+00 1354.0 826 78.6
Atru.chr11.243 Acer truncatum HOM05D004962 ORTHO05D006249 0.0e+00 1350.5 826 77.8
Potri.010G119600 Populus trichocarpa HOM05D004962 ORTHO05D006249 0.0e+00 1350.5 826 78.3
CiPaw.05G242900 Carya illinoinensis HOM05D004962 ORTHO05D006249 0.0e+00 1350.1 835 77.5
Manes.14G107300 Manihot esculenta HOM05D004962 ORTHO05D006249 0.0e+00 1348.6 829 77.1
Ciclev10014261m.g Citrus clementina HOM05D004962 ORTHO05D006249 0.0e+00 1340.9 833 76.4
Actinidia14925 Actinidia chinensis HOM05D004962 ORTHO05D006249 0.0e+00 1326.2 776 83.0
TWI31G0370 Tripterygium wilfordii HOM05D004962 ORTHO05D006249 0.0e+00 1320.8 831 76.5
Prupe.1G317200 Prunus persica HOM05D004962 ORTHO05D006249 0.0e+00 1318.1 835 76.6
DCAR_007266 Daucus carota HOM05D004962 ORTHO05D006249 0.0e+00 1317.4 819 77.8
Nitab4.5_0002112g0120 Nicotiana tabacum HOM05D004962 ORTHO05D006249 0.0e+00 1317.4 824 76.2
GSVIVG01011835001 Vitis vinifera HOM05D004962 ORTHO05D006249 0.0e+00 1315.8 828 76.3
Nn4g23964 Nelumbo nucifera HOM05D004962 ORTHO05D006249 0.0e+00 1310.0 836 75.4
Haze_00658 Corylus avellana HOM05D004962 ORTHO05D006249 0.0e+00 1309.3 965 67.2
Duzib248G1599 Durio zibethinus HOM05D004962 ORTHO05D006249 0.0e+00 1308.1 834 75.2
MD13G1035000 Malus domestica HOM05D004962 ORTHO05D006249 0.0e+00 1308.1 832 75.6
Thecc.02G221200 Theobroma cacao HOM05D004962 ORTHO05D006249 0.0e+00 1308.1 835 74.9
SalBow8G2488 Salvia bowleyana HOM05D004962 ORTHO05D006249 0.0e+00 1307.4 828 74.2
FvH4_4g26660 Fragaria vesca HOM05D004962 ORTHO05D006249 0.0e+00 1301.2 829 76.0
Peaxi162Scf00179g00544 Petunia axillaris HOM05D004962 ORTHO05D006249 0.0e+00 1301.2 827 75.0
FAN12G3194 Fragaria x ananassa HOM05D004962 ORTHO05D006249 0.0e+00 1299.3 829 75.9
FAN12G0536 Fragaria x ananassa HOM05D004962 ORTHO05D006249 0.0e+00 1298.9 829 75.9
MD16G1036900 Malus domestica HOM05D004962 ORTHO05D006249 0.0e+00 1298.5 833 75.4
Nitab4.5_0000694g0070 Nicotiana tabacum HOM05D004962 ORTHO05D006249 0.0e+00 1298.5 825 75.3
PGSC0003DMG400025502 Solanum tuberosum HOM05D004962 ORTHO05D006249 0.0e+00 1298.5 825 74.9
RcHm_v2.0_Chr4g0434371 Rosa chinensis HOM05D004962 ORTHO05D006249 0.0e+00 1295.8 829 76.1
Hund20741 Selenicereus undatus HOM05D004962 ORTHO05D006249 0.0e+00 1295.4 826 75.2
FAN07G0368 Fragaria x ananassa HOM05D004962 ORTHO05D006249 0.0e+00 1293.5 835 75.3
Solyc06g008310.3 Solanum lycopersicum HOM05D004962 ORTHO05D006249 0.0e+00 1293.5 828 75.0
Gohir.D10G184801 Gossypium hirsutum HOM05D004962 ORTHO05D006249 0.0e+00 1293.1 831 74.6
Sopen06g003160 Solanum pennellii HOM05D004962 ORTHO05D006249 0.0e+00 1292.7 827 74.7
Cc11_g09620 Coffea canephora HOM05D004962 ORTHO05D006249 0.0e+00 1291.2 825 74.9
Gorai.011G207200 Gossypium raimondii HOM05D004962 ORTHO05D006249 0.0e+00 1290.0 831 74.4
FAN22G2325 Fragaria x ananassa HOM05D004962 ORTHO05D006249 0.0e+00 1289.6 829 75.5
Sc04g0005990 Simmondsia chinensis HOM05D004962 ORTHO05D006249 0.0e+00 1289.6 829 74.7
Medtr1g109490 Medicago truncatula HOM05D004962 ORTHO05D006249 0.0e+00 1287.3 832 74.6
FAN17G1054 Fragaria x ananassa HOM05D004962 ORTHO05D006249 0.0e+00 1286.6 835 75.0
Aqoxy3G04030 Aquilegia oxysepala HOM05D004962 ORTHO05D006249 0.0e+00 1285.8 837 74.7
Glyma.20G121000 Glycine max HOM05D004962 ORTHO05D006249 0.0e+00 1285.8 836 74.3
MSTRG.2215 Avicennia marina HOM05D004962 ORTHO05D006249 0.0e+00 1285.4 828 73.7
VMungo0720G3109 Vigna mungo HOM05D004962 ORTHO05D006249 0.0e+00 1284.6 832 74.3
CANSAT01G1665 Cannabis sativa HOM05D004962 ORTHO05D006249 0.0e+00 1281.2 827 75.3
Phvul.007G032400 Phaseolus vulgaris HOM05D004962 ORTHO05D006249 0.0e+00 1280.0 832 73.9
PGR119G1728 Punica granatum HOM05D004962 ORTHO05D006249 0.0e+00 1279.6 832 74.5
Psat6g224120 Pisum sativum HOM05D004962 ORTHO05D006249 0.0e+00 1278.5 828 74.3
Eucgr.G02236 Eucalyptus grandis HOM05D004962 ORTHO05D006249 0.0e+00 1278.1 836 73.6
Glyma.10G270300 Glycine max HOM05D004962 ORTHO05D006249 0.0e+00 1272.7 836 73.6
vmacro10604 Vaccinium macrocarpon HOM05D004962 ORTHO05D006249 0.0e+00 1271.5 732 83.5
Ca_06893_v3 Cicer arietinum L. HOM05D004962 ORTHO05D006249 0.0e+00 1268.8 836 73.6
Lalb_Chr06g0165831 Lupinus albus HOM05D004962 ORTHO05D006249 0.0e+00 1266.9 833 73.1
AUR62014113 Chenopodium quinoa HOM05D004962 ORTHO05D006249 0.0e+00 1263.4 828 73.6
Lj5g0019473 Lotus japonicus HOM05D004962 ORTHO05D006249 0.0e+00 1260.0 835 72.9
MELO3C012277.2 Cucumis melo HOM05D004962 ORTHO05D006249 0.0e+00 1255.0 835 73.2
Migut.E00376 Erythranthe guttata HOM05D004962 ORTHO05D006249 0.0e+00 1252.7 821 72.4
arahy.Tifrunner.gnm1.ann1.HFR8A2 Arachis hypogaea HOM05D004962 ORTHO05D006249 0.0e+00 1251.9 836 72.0
AUR62002806 Chenopodium quinoa HOM05D004962 ORTHO05D006249 0.0e+00 1250.7 832 72.7
arahy.Tifrunner.gnm1.ann1.I79V4W Arachis hypogaea HOM05D004962 ORTHO05D006249 0.0e+00 1248.4 836 72.1
Sed0022508 Sechium edule HOM05D004962 ORTHO05D006249 0.0e+00 1247.6 829 72.3
CsaV3_5G034620 Cucumis sativus L. HOM05D004962 ORTHO05D006249 0.0e+00 1246.5 835 72.6
SGA_v2.0_scaffold170G38808 Striga asiatica HOM05D004962 ORTHO05D006249 0.0e+00 1243.8 834 71.8
MBI09_g25150_MAGBIO Magnolia biondii HOM05D004962 ORTHO05D006249 0.0e+00 1241.5 829 72.1
HanXRQChr08g0213241 Helianthus annuus HOM05D004962 ORTHO05D006249 0.0e+00 1239.9 831 72.3
PSO063G7634 Papaver somniferum HOM05D004962 ORTHO05D006249 0.0e+00 1238.8 848 71.8
QL01p010697 Quercus lobata HOM05D004962 ORTHO05D006249 0.0e+00 1236.1 823 72.9
EL10Ac6g14300 Beta vulgaris HOM05D004962 ORTHO05D006249 0.0e+00 1235.3 851 69.8
ClCG05G022460 Citrullus lanatus HOM05D004962 ORTHO05D006249 0.0e+00 1235.3 871 69.3
ECA233G5272 Erigeron canadensis HOM05D004962 ORTHO05D006249 0.0e+00 1232.2 829 72.6
PSO782G5688 Papaver somniferum HOM05D004962 ORTHO05D006249 0.0e+00 1220.3 855 70.4
Oeu048367.1 Olea europaea HOM05D004962 ORTHO05D006249 0.0e+00 1209.1 928 65.4
Lsat_1_v5_gn_8_42541 Lactuca sativa HOM05D004962 ORTHO05D006249 0.0e+00 1196.0 823 71.0
Thhalv10011237m.g Eutrema salsugineum HOM05D004962 ORTHO05D006249 0.0e+00 1163.7 830 67.5
TPR.G18855 Trifolium pratense HOM05D004962 ORTHO05D006249 0.0e+00 1158.7 761 73.3
AL1G56890 Arabidopsis lyrata HOM05D004962 ORTHO05D006249 0.0e+00 1149.8 831 66.9
C06p04260 Brassica napus HOM05D004962 ORTHO05D006249 0.0e+00 1148.7 828 66.8
Carub.0001s3872 Capsella rubella HOM05D004962 ORTHO05D006249 0.0e+00 1147.9 830 66.6
Sp1g36410 Schrenkiella parvula HOM05D004962 ORTHO05D006249 0.0e+00 1147.9 830 66.9
Aa31LG10G4460 Aethionema arabicum HOM05D004962 ORTHO05D006249 0.0e+00 1147.5 825 66.7
BolC6t35550H Brassica oleracea HOM05D004962 ORTHO05D006249 0.0e+00 1146.0 829 66.7
BraA06t23589Z Brassica rapa HOM05D004962 ORTHO05D006249 0.0e+00 1144.0 827 66.7
BcaB04g17325 Brassica carinata HOM05D004962 ORTHO05D006249 0.0e+00 1143.3 828 66.7
BcaC08g43144 Brassica carinata HOM05D004962 ORTHO05D006249 0.0e+00 1140.9 828 66.4
A06p03820 Brassica napus HOM05D004962 ORTHO05D006249 0.0e+00 1138.3 827 66.5
THA.LOC104811357 Tarenaya hassleriana HOM05D004962 ORTHO05D006249 0.0e+00 1135.9 832 65.6
BcaB07g33669 Brassica carinata HOM05D004962 ORTHO05D006249 0.0e+00 1134.0 827 66.4
CARHR039570 Cardamine hirsuta HOM05D004962 ORTHO05D006249 0.0e+00 1132.5 831 66.5
AT1G49540 Arabidopsis thaliana HOM05D004962 ORTHO05D006249 0.0e+00 1124.8 831 65.8
ATR0759G035 Amborella trichopoda HOM05D004962 ORTHO05D006249 0.0e+00 1117.8 829 65.5
Zm00001eb033820 Zea mays HOM05D004962 ORTHO05D006249 0.0e+00 1105.9 828 64.5
Os08g0493900 Oryza sativa ssp. japonica HOM05D004962 ORTHO05D006249 0.0e+00 1105.5 831 63.2
CDE06G0233 Ceratophyllum demersum HOM05D004962 ORTHO05D006249 0.0e+00 1100.1 816 65.1
Ah.03g138470 Amaranthus hybridus HOM05D004962 ORTHO05D006249 1.1e-299 1033.1 666 74.0
SHI16242 Sapria himalayana HOM05D004962 ORTHO05D006249 1.3e-290 1003.0 826 60.3
Gohir.A10G178200 Gossypium hirsutum HOM05D004962 ORTHO05D006249 3.1e-281 971.8 638 72.6
Cpa.g.sc65.71 Carica papaya HOM05D004962 ORTHO05D006249 1.8e-273 946.0 818 59.0
TAR371G0254 Trochodendron aralioides HOM05D004962 ORTHO05D006249 9.5e-270 933.7 571 78.8
Mapoly0064s0032 Marchantia polymorpha HOM05D004962 ORTHO05D006249 2.7e-248 862.4 891 50.8
Pp3c16_8750 Physcomitrium patens HOM05D004962 ORTHO05D005286 1.0e-239 833.9 857 49.7
SMO364G0112 Selaginella moellendorffii HOM05D004962 ORTHO05D006249 4.0e-236 822.0 850 51.3
unitig_699.g19525 Utricularia gibba HOM05D004962 ORTHO05D006249 3.2e-233 812.4 808 52.5
COL.COLO4_32126 Corchorus olitorius HOM05D004962 ORTHO05D006249 1.0e-178 631.3 402 72.9
COL.COLO4_32127 Corchorus olitorius HOM05D004962 ORTHO05D006249 7.2e-177 625.2 447 68.5
HPP92_023439 Vanilla planifolia HOM05D004962 ORTHO05D006249 4.3e-153 546.2 401 67.6
Aa31LG10G4060 Aethionema arabicum HOM05D004962 ORTHO05D006249 1.3e-133 481.5 359 64.3
HPP92_023440 Vanilla planifolia HOM05D004962 ORTHO05D006249 1.3e-130 471.5 350 62.3
Actinidia16688 Actinidia chinensis HOM05D004962 ORTHO05D006249 1.6e-128 464.5 264 83.0
TAR371G0924 Trochodendron aralioides HOM05D004962 ORTHO05D006249 3.4e-110 403.7 230 81.7
Sed0004719 Sechium edule HOM05D004962 ORTHO05D006249 1.2e-107 395.2 811 34.9
MD07G1142000 Malus domestica HOM05D004962 ORTHO05D006249 3.1e-103 380.6 298 67.8
ClCG04G012840 Citrullus lanatus HOM05D004962 ORTHO05D001482 7.6e-102 375.9 472 46.4
Cfa023883 Carpinus fangiana HOM05D004962 ORTHO05D006249 3.9e-98 363.6 867 31.5
Dinv31590 Davidia involucrata HOM05D004962 ORTHO05D006249 1.9e-97 361.3 193 86.0
SEGI_20231 Sequoiadendron giganteum HOM05D004962 ORTHO05D006249 1.3e-96 358.6 304 57.2
Dinv31591 Davidia involucrata HOM05D004962 ORTHO05D006249 5.5e-92 343.2 239 72.8
Cre10.g462750 Chlamydomonas reinhardtii HOM05D004962 ORTHO05D006249 7.1e-92 342.8 1177 26.3
SEGI_12856 Sequoiadendron giganteum HOM05D004962 ORTHO05D006249 3.4e-86 323.9 250 62.8
MCO16G399 Micromonas commoda HOM05D004962 ORTHO05D006249 8.7e-82 309.3 853 29.3
TAR371G1111 Trochodendron aralioides HOM05D004962 ORTHO05D006249 1.5e-81 308.5 195 74.4
MD07G1141900 Malus domestica HOM05D004962 ORTHO05D006249 2.0e-78 298.1 192 74.5
BcaC07g37033 Brassica carinata HOM05D004962 ORTHO05D006249 1.5e-70 271.9 549 35.0
C08p04030 Brassica napus HOM05D004962 ORTHO05D006249 7.2e-52 209.9 193 52.8
A08p03840 Brassica napus HOM05D004962 ORTHO05D006249 1.0e-50 206.1 551 29.9
BraA08t32413Z Brassica rapa HOM05D004962 ORTHO05D006249 1.0e-50 206.1 551 29.9
SEGI_09159 Sequoiadendron giganteum HOM05D004962 ORTHO05D006249 1.0e-45 189.5 154 61.7
TAR371G0141 Trochodendron aralioides HOM05D004962 ORTHO05D006249 9.8e-41 172.9 102 76.5
vmacro10603 Vaccinium macrocarpon HOM05D004962 ORTHO05D006249 1.3e-40 172.6 109 78.0
PGSC0003DMG400024407 Solanum tuberosum HOM05D004962 ORTHO05D006249 6.3e-40 170.2 99 79.8
PGSC0003DMG400031444 Solanum tuberosum HOM05D004962 ORTHO05D006249 6.4e-32 143.7 78 84.6
Dinv31589 Davidia involucrata HOM05D004962 ORTHO05D006249 2.3e-29 135.2 96 68.8
TAR371G0959 Trochodendron aralioides HOM05D004962 ORTHO05D006249 6.6e-29 133.7 70 88.6
CBR_g37253 Chara braunii HOM05D004962 ORTHO05D000048 2.3e-26 125.2 209 38.8
TPR.G18842 Trifolium pratense HOM05D004962 ORTHO05D006249 2.0e-25 122.1 69 79.7
C08p04020 Brassica napus HOM05D004962 ORTHO05D006249 3.2e-23 114.8 69 76.8
Actinidia16687 Actinidia chinensis HOM05D004962 ORTHO05D006249 7.8e-22 110.2 53 84.9
TAR371G1015 Trochodendron aralioides HOM05D004962 ORTHO05D006249 1.3e-21 109.4 64 76.6
BcaB02g11086 Brassica carinata HOM05D004962 ORTHO05D006249 3.0e-21 108.2 93 54.8
SEGI_19116 Sequoiadendron giganteum HOM05D004962 ORTHO05D006249 1.1e-20 106.3 65 66.2
A05p20570 Brassica napus HOM05D004962 ORTHO05D040710 4.3e-20 104.4 114 52.6
BolC8t47195H Brassica oleracea HOM05D004962 ORTHO05D006249 4.3e-20 104.4 131 44.3
BraA05t20967Z Brassica rapa HOM05D004962 ORTHO05D040710 3.4e-17 94.7 113 48.7
BolC8t47194H Brassica oleracea HOM05D004962 ORTHO05D006249 9.9e-17 93.2 139 39.6
Psat5g186320 Pisum sativum HOM05D000280 ORTHO05D004446 1.8e-10 72.4 44 63.6
RcHm_v2.0_Chr7g0200531 Rosa chinensis HOM05D004962 ORTHO05D006249 1.3e-08 66.2 86 45.3
ECA247G3798 Erigeron canadensis HOM05D000464 ORTHO05D006292 4.1e-07 61.2 146 30.1
SEGI_06199 Sequoiadendron giganteum HOM05D005323 ORTHO05D006820 7.1e-07 60.5 120 30.8
DCAR_026196 Daucus carota HOM05D000464 ORTHO05D006292 1.2e-06 59.7 148 29.7
Rhsim12G0170400 Rhododendron simsii HOM05D000464 ORTHO05D006292 1.2e-06 59.7 176 27.8
SHI17349 Sapria himalayana HOM05D000464 ORTHO05D006292 1.2e-06 59.7 147 27.9
Mapoly0049s0059 Marchantia polymorpha HOM05D005323 ORTHO05D006820 3.5e-06 58.2 120 29.2
SHI06205 Sapria himalayana HOM05D005323 ORTHO05D000023 4.6e-06 57.8 133 27.1
DCAR_007461 Daucus carota HOM05D000464 ORTHO05D006292 6.0e-06 57.4 146 27.4


User provided reference genes

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