Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0034076 Camellia sinensis var. sinensis HOM05D000979 ORTHO05D043283 7.0e-43 176.8 84 100.0
CSS0020489 Camellia sinensis var. sinensis HOM05D000979 ORTHO05D003182 3.1e-14 81.6 41 90.2
CSS0042313 Camellia sinensis var. sinensis HOM05D000979 ORTHO05D003182 3.1e-14 81.6 41 90.2
CSS0036928 Camellia sinensis var. sinensis HOM05D000979 ORTHO05D003182 4.0e-14 81.3 89 51.7
SEGI_14140 Sequoiadendron giganteum HOM05D000979 ORTHO05D043283 2.0e-13 79.0 88 48.9
ClCG06G016740 Citrullus lanatus HOM05D000979 ORTHO05D003182 3.4e-13 78.2 84 52.4
FvH4_5g16460 Fragaria vesca HOM05D000979 ORTHO05D003182 3.4e-13 78.2 89 52.8
FAN18G1931 Fragaria x ananassa HOM05D000979 ORTHO05D003182 3.4e-13 78.2 89 52.8
Cc04_g13530 Coffea canephora HOM05D000979 ORTHO05D003182 4.4e-13 77.8 41 85.4
Dinv20695 Davidia involucrata HOM05D000979 ORTHO05D003182 4.4e-13 77.8 41 85.4
Rhsim08G0168300 Rhododendron simsii HOM05D000979 ORTHO05D003182 4.4e-13 77.8 41 85.4
Sed0018463 Sechium edule HOM05D000979 ORTHO05D003182 4.4e-13 77.8 41 85.4
arahy.Tifrunner.gnm1.ann1.1E0YQ2 Arachis hypogaea HOM05D000979 ORTHO05D003182 5.8e-13 77.4 43 79.1
arahy.Tifrunner.gnm1.ann1.CGIH3L Arachis hypogaea HOM05D000979 ORTHO05D003182 5.8e-13 77.4 43 79.1
CANSAT80G0008 Cannabis sativa HOM05D000979 ORTHO05D003182 5.8e-13 77.4 82 51.2
PSO832G4469 Papaver somniferum HOM05D000979 ORTHO05D003182 5.8e-13 77.4 87 46.0
CAN.G853.9 Capsicum annuum HOM05D000979 ORTHO05D003182 7.6e-13 77.0 41 85.4
Solyc03g113900.4 Solanum lycopersicum HOM05D000979 ORTHO05D003182 7.6e-13 77.0 41 85.4
Sopen03g032950 Solanum pennellii HOM05D000979 ORTHO05D003182 7.6e-13 77.0 41 85.4
PGSC0003DMG401024473 Solanum tuberosum HOM05D000979 ORTHO05D003182 7.6e-13 77.0 41 85.4
Thecc.03G005300 Theobroma cacao HOM05D000979 ORTHO05D003182 7.6e-13 77.0 87 51.7
Ah.11g046160 Amaranthus hybridus HOM05D000306 ORTHO05D003182 9.9e-13 76.6 41 82.9
EL10Ac5g10823 Beta vulgaris HOM05D000979 ORTHO05D003182 9.9e-13 76.6 41 82.9
FAN08G3080 Fragaria x ananassa HOM05D000979 ORTHO05D003182 9.9e-13 76.6 85 51.8
Psat4g056000 Pisum sativum HOM05D000979 ORTHO05D003182 9.9e-13 76.6 41 82.9
RcHm_v2.0_Chr7g0179631 Rosa chinensis HOM05D000979 ORTHO05D003182 9.9e-13 76.6 85 51.8
vmacro19358 Vaccinium macrocarpon HOM05D000979 ORTHO05D003182 9.9e-13 76.6 41 82.9
AL1G40950 Arabidopsis lyrata HOM05D000979 ORTHO05D003182 1.3e-12 76.3 41 82.9
AT1G27520 Arabidopsis thaliana HOM05D000979 ORTHO05D003182 1.3e-12 76.3 41 82.9
Carub.0001s2607 Capsella rubella HOM05D000979 ORTHO05D003182 1.3e-12 76.3 41 82.9
Thhalv10007201m.g Eutrema salsugineum HOM05D000979 ORTHO05D003182 1.3e-12 76.3 41 82.9
Phvul.003G197300 Phaseolus vulgaris HOM05D000979 ORTHO05D003182 1.3e-12 76.3 41 82.9
Sp1g23770 Schrenkiella parvula HOM05D000979 ORTHO05D003182 1.3e-12 76.3 41 82.9
Eucgr.B00341 Eucalyptus grandis HOM05D000979 ORTHO05D003182 1.7e-12 75.9 41 82.9
Lalb_Chr12g0201401 Lupinus albus HOM05D000979 ORTHO05D003182 1.7e-12 75.9 41 82.9
Nn3g16991 Nelumbo nucifera HOM05D000979 ORTHO05D003182 1.7e-12 75.9 89 48.3
Prupe.5G178500 Prunus persica HOM05D000979 ORTHO05D003182 1.7e-12 75.9 86 48.8
TWI81G0481 Tripterygium wilfordii HOM05D000979 ORTHO05D003182 1.7e-12 75.9 86 51.2
TAR374G0531 Trochodendron aralioides HOM05D000979 ORTHO05D003182 1.7e-12 75.9 41 82.9
ATR1149G103 Amborella trichopoda HOM05D000979 ORTHO05D003182 2.2e-12 75.5 41 80.5
BcaC05g26569 Brassica carinata HOM05D000979 ORTHO05D003182 2.2e-12 75.5 41 80.5
BcaC05g26753 Brassica carinata HOM05D000979 ORTHO05D003182 2.2e-12 75.5 41 80.5
A09p38490 Brassica napus HOM05D000979 ORTHO05D003182 2.2e-12 75.5 41 80.5
C05p26210 Brassica napus HOM05D000979 ORTHO05D003182 2.2e-12 75.5 41 80.5
BolC5t31335H Brassica oleracea HOM05D000979 ORTHO05D003182 2.2e-12 75.5 41 80.5
BraA09t39355Z Brassica rapa HOM05D000979 ORTHO05D003182 2.2e-12 75.5 41 80.5
CDE06G1664 Ceratophyllum demersum HOM05D000979 ORTHO05D003182 2.2e-12 75.5 88 51.1
ECA247G1935 Erigeron canadensis HOM05D000979 ORTHO05D003182 2.2e-12 75.5 41 80.5
PGR083G1350 Punica granatum HOM05D000979 ORTHO05D003182 2.2e-12 75.5 41 82.9
VMungo1215G0019 Vigna mungo HOM05D000979 ORTHO05D003182 2.2e-12 75.5 41 80.5
AUR62008279 Chenopodium quinoa HOM05D000979 ORTHO05D003182 2.9e-12 75.1 41 80.5
CsaV3_1G001780 Cucumis sativus L. HOM05D000979 ORTHO05D003182 2.9e-12 75.1 80 53.8
THA.LOC104808302 Tarenaya hassleriana HOM05D000979 ORTHO05D003182 2.9e-12 75.1 41 80.5
Actinidia33039 Actinidia chinensis HOM05D000979 ORTHO05D003182 4.9e-12 74.3 37 89.2
Cfa019072 Carpinus fangiana HOM05D000979 ORTHO05D003182 4.9e-12 74.3 37 86.5
Haze_07442 Corylus avellana HOM05D000979 ORTHO05D003182 4.9e-12 74.3 37 86.5
Lj4g0017712 Lotus japonicus HOM05D000979 ORTHO05D003182 4.9e-12 74.3 41 80.5
MD14G1185600 Malus domestica HOM05D000979 ORTHO05D003182 4.9e-12 74.3 89 51.7
Medtr4g106370 Medicago truncatula HOM05D000979 ORTHO05D003182 4.9e-12 74.3 41 80.5
Os02g0741300 Oryza sativa ssp. japonica HOM05D000979 ORTHO05D003182 4.9e-12 74.3 41 80.5
TPR.G37545 Trifolium pratense HOM05D000979 ORTHO05D003182 4.9e-12 74.3 41 80.5
HPP92_017566 Vanilla planifolia HOM05D000979 ORTHO05D003182 4.9e-12 74.3 41 80.5
Zm00001eb254180 Zea mays HOM05D000979 ORTHO05D003182 4.9e-12 74.3 41 80.5
Atru.chr9.2408 Acer truncatum HOM05D000979 ORTHO05D003182 6.4e-12 73.9 87 48.3
Migut.I00053 Erythranthe guttata HOM05D000979 ORTHO05D003182 6.4e-12 73.9 41 80.5
Nn4g22903 Nelumbo nucifera HOM05D000979 ORTHO05D003182 6.4e-12 73.9 81 49.4
Nitab4.5_0001286g0080 Nicotiana tabacum HOM05D000979 ORTHO05D003182 6.4e-12 73.9 41 80.5
GSVIVG01007818001 Vitis vinifera HOM05D000979 ORTHO05D003182 6.4e-12 73.9 42 78.6
Glyma.17G092900 Glycine max HOM05D000979 ORTHO05D003182 8.4e-12 73.6 41 78.0
Glyma.U031507 Glycine max HOM05D000979 ORTHO05D003182 8.4e-12 73.6 41 78.0
HanXRQChr02g0044201 Helianthus annuus HOM05D000979 ORTHO05D003182 8.4e-12 73.6 41 78.0
Manes.06G101300 Manihot esculenta HOM05D000979 ORTHO05D003182 8.4e-12 73.6 75 52.0
Nitab4.5_0001642g0070 Nicotiana tabacum HOM05D000979 ORTHO05D003182 8.4e-12 73.6 37 86.5
MELO3C017118.2 Cucumis melo HOM05D000979 ORTHO05D003182 1.1e-11 73.2 41 80.5
MBI15_g03390_MAGBIO Magnolia biondii HOM05D000979 ORTHO05D003182 1.1e-11 73.2 41 78.0
QL10p012440 Quercus lobata HOM05D000979 ORTHO05D003182 1.1e-11 73.2 41 78.0
COL.COLO4_04325 Corchorus olitorius HOM05D000979 ORTHO05D003182 1.4e-11 72.8 41 78.0
DCAR_026114 Daucus carota HOM05D000979 ORTHO05D003182 1.4e-11 72.8 42 73.8
Duzib084G1093 Durio zibethinus HOM05D000979 ORTHO05D003182 1.4e-11 72.8 41 78.0
Gohir.A09G170400 Gossypium hirsutum HOM05D000979 ORTHO05D003182 1.4e-11 72.8 41 78.0
Gohir.D09G166100 Gossypium hirsutum HOM05D000979 ORTHO05D003182 1.4e-11 72.8 41 78.0
Gorai.006G187900 Gossypium raimondii HOM05D000979 ORTHO05D003182 1.4e-11 72.8 41 78.0
CiPaw.11G031100 Carya illinoinensis HOM05D000979 ORTHO05D003182 1.9e-11 72.4 41 78.0
Lj9C453T5 Lonicera japonica HOM05D000979 ORTHO05D003182 1.9e-11 72.4 40 80.0
Oeu016338.1 Olea europaea HOM05D000979 ORTHO05D003182 1.9e-11 72.4 57 57.9
Hund09408 Selenicereus undatus HOM05D000979 ORTHO05D003182 1.9e-11 72.4 41 78.0
Ciclev10019471m.g Citrus clementina HOM05D000979 ORTHO05D003182 2.4e-11 72.0 41 75.6
Potri.015G071400 Populus trichocarpa HOM05D000979 ORTHO05D003182 2.4e-11 72.0 41 75.6
Sabra15G0076500 Salix brachista HOM05D000979 ORTHO05D003182 2.4e-11 72.0 41 75.6
Sabra15G0096400 Salix brachista HOM05D000979 ORTHO05D003182 2.4e-11 72.0 41 75.6
Potri.012G076600 Populus trichocarpa HOM05D000979 ORTHO05D003182 3.2e-11 71.6 41 75.6
SMO145G0001 Selaginella moellendorffii HOM05D000979 ORTHO05D003182 3.2e-11 71.6 42 73.8
SMO366G0001 Selaginella moellendorffii HOM05D000979 ORTHO05D003182 3.2e-11 71.6 42 73.8
Aqoxy3G03093 Aquilegia oxysepala HOM05D000979 ORTHO05D003182 4.1e-11 71.2 41 75.6
Cpa.g.sc110.19 Carica papaya HOM05D000979 ORTHO05D003182 7.1e-11 70.5 77 48.1
unitig_750.g28479 Utricularia gibba HOM05D000979 ORTHO05D003182 9.2e-11 70.1 41 73.2
MCO15G188 Micromonas commoda HOM05D000979 ORTHO05D003182 1.6e-10 69.3 38 76.3
SGA_v2.0_scaffold467G52027 Striga asiatica HOM05D000979 ORTHO05D003182 2.1e-10 68.9 40 75.0
Lsat_1_v5_gn_1_12180 Lactuca sativa HOM05D000979 ORTHO05D003182 1.9e-08 62.4 69 49.3


User provided reference genes

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