Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0034066 Camellia sinensis var. sinensis HOM05D008087 ORTHO05D010187 9.3e-93 343.6 180 100.0
CSS0002060 Camellia sinensis var. sinensis HOM05D008087 ORTHO05D010187 9.6e-82 307.0 169 97.0
CSS0037579 Camellia sinensis var. sinensis HOM05D008087 ORTHO05D010187 2.8e-81 305.4 169 96.4
Nitab4.5_0002966g0020 Nicotiana tabacum HOM05D008087 ORTHO05D010187 1.9e-66 256.1 168 79.2
Lj4P912T21 Lonicera japonica HOM05D008087 ORTHO05D010187 1.6e-65 253.1 169 78.1
GSVIVG01015086001 Vitis vinifera HOM05D004023 ORTHO05D004681 1.1e-64 250.4 166 78.3
MSTRG.19463 Avicennia marina HOM05D008087 ORTHO05D010187 2.4e-64 249.2 164 78.7
Cc06_g12130 Coffea canephora HOM05D008087 ORTHO05D010187 2.4e-64 249.2 168 75.6
Hma1.2p1_0179F.1_g079550 Hydrangea macrophylla HOM05D008087 ORTHO05D010187 4.1e-64 248.4 167 77.2
QL11p000704 Quercus lobata HOM05D008087 ORTHO05D010187 4.1e-64 248.4 169 76.3
Rhsim05G0007800 Rhododendron simsii HOM05D008087 ORTHO05D010187 7.7e-63 244.2 168 77.4
Solyc07g041770.1 Solanum lycopersicum HOM05D008087 ORTHO05D010187 2.2e-62 242.7 168 73.2
TAR383G0588 Trochodendron aralioides HOM05D008087 ORTHO05D010187 5.0e-62 241.5 168 75.0
Manes.16G095600 Manihot esculenta HOM05D008087 ORTHO05D010187 8.5e-62 240.7 169 73.4
Cfa002992 Carpinus fangiana HOM05D008087 ORTHO05D010187 1.1e-61 240.4 169 75.7
Sopen07g021260 Solanum pennellii HOM05D008087 ORTHO05D010187 1.4e-61 240.0 168 72.6
Ciclev10009482m.g Citrus clementina HOM05D008087 ORTHO05D010187 2.5e-61 239.2 169 74.6
DCAR_024749 Daucus carota HOM05D008087 ORTHO05D010187 3.2e-61 238.8 169 74.0
PGSC0003DMG400013001 Solanum tuberosum HOM05D008087 ORTHO05D010187 3.2e-61 238.8 168 73.2
Oeu049121.1 Olea europaea HOM05D008087 ORTHO05D010187 1.2e-60 236.9 169 74.0
Gorai.010G088200 Gossypium raimondii HOM05D008087 ORTHO05D010187 1.6e-60 236.5 169 74.0
Gohir.D06G075300 Gossypium hirsutum HOM05D008087 ORTHO05D010187 2.1e-60 236.1 169 74.0
Nn8g38653 Nelumbo nucifera HOM05D008087 ORTHO05D010187 2.1e-60 236.1 168 73.8
SalBow6G2426 Salvia bowleyana HOM05D008087 ORTHO05D010187 2.7e-60 235.7 167 73.1
Gohir.A06G076300 Gossypium hirsutum HOM05D008087 ORTHO05D010187 3.6e-60 235.3 169 73.4
TWI34G0776 Tripterygium wilfordii HOM05D008087 ORTHO05D010187 3.6e-60 235.3 168 70.8
Thecc.09G077500 Theobroma cacao HOM05D008087 ORTHO05D010187 7.9e-60 234.2 169 72.8
Atru.chr7.1701 Acer truncatum HOM05D002335 ORTHO05D006692 1.0e-59 233.8 169 72.8
Glyma.13G110250 Glycine max HOM05D008087 ORTHO05D010187 3.9e-59 231.9 168 74.4
Sabra18G0058300 Salix brachista HOM05D008087 ORTHO05D010187 5.1e-59 231.5 171 71.9
VMungo1215G2436 Vigna mungo HOM05D008087 ORTHO05D010187 5.1e-59 231.5 168 73.8
COL.COLO4_18101 Corchorus olitorius HOM05D008087 ORTHO05D010187 6.7e-59 231.1 169 73.4
Potri.018G065700 Populus trichocarpa HOM05D008087 ORTHO05D010187 1.1e-58 230.3 171 72.5
MD15G1217200 Malus domestica HOM05D008087 ORTHO05D010187 2.0e-58 229.6 169 71.0
Prupe.7G199300 Prunus persica HOM05D008087 ORTHO05D010187 2.6e-58 229.2 170 71.8
Duzib168G2281 Durio zibethinus HOM05D008087 ORTHO05D010187 3.3e-58 228.8 169 72.2
Lj4g0020355 Lotus japonicus HOM05D008087 ORTHO05D010187 3.3e-58 228.8 168 72.0
Cpa.g.sc28.44 Carica papaya HOM05D008087 ORTHO05D010187 9.7e-58 227.3 171 73.1
CiPaw.03G206800 Carya illinoinensis HOM05D008087 ORTHO05D010187 9.7e-58 227.3 170 71.8
Glyma.17G049450 Glycine max HOM05D008087 ORTHO05D010187 2.2e-57 226.1 168 72.6
Phvul.003G131000 Phaseolus vulgaris HOM05D008087 ORTHO05D010187 2.8e-57 225.7 168 72.6
Migut.J00928 Erythranthe guttata HOM05D008087 ORTHO05D010187 1.1e-56 223.8 167 71.3
Duzib187G0811 Durio zibethinus HOM05D008087 ORTHO05D010187 1.4e-56 223.4 159 73.6
Eucgr.C03187 Eucalyptus grandis HOM05D008087 ORTHO05D010187 6.9e-56 221.1 168 68.5
RcHm_v2.0_Chr2g0094891 Rosa chinensis HOM05D008087 ORTHO05D010187 1.0e-54 217.2 168 69.6
Lalb_Chr07g0181171 Lupinus albus HOM05D008087 ORTHO05D010187 3.8e-54 215.3 168 69.0
Psat4g017680 Pisum sativum HOM05D008087 ORTHO05D010187 3.8e-54 215.3 170 69.4
arahy.Tifrunner.gnm1.ann1.TB6UZQ Arachis hypogaea HOM05D008087 ORTHO05D010187 1.1e-53 213.8 168 67.9
CANSAT56G3514 Cannabis sativa HOM05D008087 ORTHO05D010187 1.1e-53 213.8 168 67.3
AUR62028937 Chenopodium quinoa HOM05D008087 ORTHO05D010187 3.6e-52 208.8 170 66.5
TPR.G12579 Trifolium pratense HOM05D008087 ORTHO05D010187 2.3e-51 206.1 168 66.1
Aqoxy1G01322 Aquilegia oxysepala HOM05D008087 ORTHO05D010187 4.4e-50 201.8 168 62.5
PSO135G0253 Papaver somniferum HOM05D008087 ORTHO05D010187 9.7e-50 200.7 168 61.9
MBI19_g11825_MAGBIO Magnolia biondii HOM05D008087 ORTHO05D010187 1.1e-48 197.2 168 60.1
Medtr4g125370 Medicago truncatula HOM05D008087 ORTHO05D010187 3.6e-44 182.2 168 61.9
Sc08g0008880 Simmondsia chinensis HOM05D008087 ORTHO05D010187 7.5e-42 174.5 168 59.5
PGR044G2582 Punica granatum HOM05D008087 ORTHO05D010187 1.7e-41 173.3 169 59.8
Eucgr.L02787 Eucalyptus grandis HOM05D008087 ORTHO05D010187 3.7e-41 172.2 168 58.3
Lsat_1_v5_gn_7_35101 Lactuca sativa HOM05D004023 ORTHO05D004681 1.2e-39 167.2 154 64.3
Ca_21320_v3 Cicer arietinum L. HOM05D008087 ORTHO05D010187 2.9e-38 162.5 168 56.0
Nitab4.5_0000343g0200 Nicotiana tabacum HOM05D008087 ORTHO05D010187 2.5e-37 159.5 105 76.2
Peaxi162Scf00127g00202 Petunia axillaris HOM05D008087 ORTHO05D010187 7.2e-37 157.9 105 75.2
Ah.09g231600 Amaranthus hybridus HOM05D008087 ORTHO05D010187 1.2e-36 157.1 145 59.3
AL5G20930 Arabidopsis lyrata HOM05D008087 ORTHO05D010187 6.8e-35 151.4 169 53.8
AT3G42725 Arabidopsis thaliana HOM05D008087 ORTHO05D010187 1.1e-32 144.1 169 52.1
PGR044G2297 Punica granatum HOM05D008087 ORTHO05D010187 1.3e-25 120.6 127 55.1
THA.LOC104811009 Tarenaya hassleriana HOM05D008087 ORTHO05D010187 1.3e-25 120.6 169 46.2
PSO724G0984 Papaver somniferum HOM05D008087 ORTHO05D010187 1.7e-25 120.2 105 60.0
Ah.14g084950 Amaranthus hybridus HOM05D008087 ORTHO05D010187 8.3e-25 117.9 111 61.3
MD15G1091800 Malus domestica HOM05D008087 ORTHO05D010187 2.1e-20 103.2 81 64.2
ATR0598G047 Amborella trichopoda HOM05D008087 ORTHO05D010187 4.0e-19 99.0 114 46.5
Dinv42391 Davidia involucrata HOM05D002335 ORTHO05D006692 2.0e-18 96.7 102 52.0
Zm00001eb005810 Zea mays HOM05D008087 ORTHO05D010187 2.6e-18 96.3 153 43.8
ECA240G4665 Erigeron canadensis HOM05D002335 ORTHO05D006692 2.5e-13 79.7 54 74.1
HPP92_026302 Vanilla planifolia HOM05D008087 ORTHO05D010187 3.1e-11 72.8 159 35.8
SMO358G0701 Selaginella moellendorffii HOM05D016812 ORTHO05D010187 3.4e-10 69.3 175 31.4
Ciclev10030215m.g Citrus clementina HOM05D008087 ORTHO05D010187 3.5e-07 59.3 168 33.9
Aa31LG4G13290 Aethionema arabicum HOM05D008087 ORTHO05D010187 1.7e-06 57.0 120 40.0
Mapoly0038s0092 Marchantia polymorpha HOM05D016812 ORTHO05D010187 2.3e-06 56.6 162 30.9
Pp3c10_8870 Physcomitrium patens HOM05D016812 ORTHO05D024947 3.0e-06 56.2 166 30.7
SEGI_14451 Sequoiadendron giganteum HOM05D003033 ORTHO05D003475 6.6e-06 55.1 151 32.5


User provided reference genes

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