Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0034062 Camellia sinensis var. sinensis HOM05D005411 ORTHO05D006463 2.8e-86 322.0 175 100.0
Dinv38942 Davidia involucrata HOM05D005411 ORTHO05D006463 8.3e-54 214.2 175 72.6
Dinv38939 Davidia involucrata HOM05D005411 ORTHO05D006463 9.1e-53 210.7 175 70.3
Actinidia02004 Actinidia chinensis HOM05D005411 ORTHO05D006463 1.2e-49 200.3 176 69.3
Hma1.2p1_0377F.1_g139300 Hydrangea macrophylla HOM05D005411 ORTHO05D006463 5.2e-48 194.9 155 71.0
Actinidia14564 Actinidia chinensis HOM05D005411 ORTHO05D006463 2.6e-47 192.6 175 66.9
CiPaw.11G134900 Carya illinoinensis HOM05D005411 ORTHO05D006463 2.8e-46 189.1 156 69.9
Solyc08g081130.4 Solanum lycopersicum HOM05D005411 ORTHO05D006463 7.0e-45 184.5 126 74.6
Sopen08g029430 Solanum pennellii HOM05D005411 ORTHO05D006463 7.0e-45 184.5 126 74.6
PGSC0003DMG403012339 Solanum tuberosum HOM05D005411 ORTHO05D006463 7.0e-45 184.5 126 74.6
PGR042G1580 Punica granatum HOM05D005411 ORTHO05D006463 2.7e-44 182.6 147 68.7
Peaxi162Scf00119g00941 Petunia axillaris HOM05D005411 ORTHO05D006463 7.7e-44 181.0 153 64.7
Nitab4.5_0013184g0010 Nicotiana tabacum HOM05D005411 ORTHO05D006463 1.0e-43 180.6 115 78.3
Nitab4.5_0001615g0100 Nicotiana tabacum HOM05D005411 ORTHO05D006463 2.3e-43 179.5 115 77.4
QL12p032900 Quercus lobata HOM05D005411 ORTHO05D006463 2.3e-43 179.5 118 79.7
Cc08_g14780 Coffea canephora HOM05D005411 ORTHO05D006463 6.6e-43 177.9 158 63.9
RcHm_v2.0_Chr7g0197541 Rosa chinensis HOM05D005411 ORTHO05D006463 6.6e-43 177.9 119 78.2
Eucgr.H02261 Eucalyptus grandis HOM05D005411 ORTHO05D006463 8.6e-43 177.6 132 72.0
MD06G1084200 Malus domestica HOM05D005411 ORTHO05D006463 1.5e-42 176.8 155 67.1
Eucgr.L02732 Eucalyptus grandis HOM05D005411 ORTHO05D006463 1.9e-42 176.4 132 72.0
Manes.02G019300 Manihot esculenta HOM05D005411 ORTHO05D006463 2.5e-42 176.0 156 66.7
CAN.G774.50 Capsicum annuum HOM05D005411 ORTHO05D006463 3.3e-42 175.6 157 63.1
FvH4_5g02510 Fragaria vesca HOM05D005411 ORTHO05D006463 5.6e-42 174.9 113 81.4
Prupe.5G100600 Prunus persica HOM05D005411 ORTHO05D006463 5.6e-42 174.9 155 65.2
Lalb_Chr09g0332851 Lupinus albus HOM05D005411 ORTHO05D006463 9.5e-42 174.1 144 66.0
vmacro13959 Vaccinium macrocarpon HOM05D005411 ORTHO05D006463 9.5e-42 174.1 189 59.3
GSVIVG01019751001 Vitis vinifera HOM05D005411 ORTHO05D006463 1.6e-41 173.3 153 66.7
CANSAT78G0141 Cannabis sativa HOM05D005411 ORTHO05D006463 2.1e-41 172.9 158 61.4
Gohir.A03G016600 Gossypium hirsutum HOM05D005411 ORTHO05D006463 2.8e-41 172.6 165 59.4
Migut.A00759 Erythranthe guttata HOM05D005411 ORTHO05D006463 3.6e-41 172.2 153 64.7
Gorai.003G158500 Gossypium raimondii HOM05D005411 ORTHO05D006463 3.6e-41 172.2 169 59.2
Oeu011043.2 Olea europaea HOM05D005411 ORTHO05D006463 3.6e-41 172.2 158 61.4
MD14G1105400 Malus domestica HOM05D005411 ORTHO05D006463 6.1e-41 171.4 113 78.8
Sed0017646 Sechium edule HOM05D005411 ORTHO05D006463 8.0e-41 171.0 159 60.4
Lsat_1_v5_gn_6_6580 Lactuca sativa HOM05D005411 ORTHO05D006463 1.0e-40 170.6 119 73.1
Potri.001G103800 Populus trichocarpa HOM05D005411 ORTHO05D006463 1.4e-40 170.2 115 77.4
ClCG07G008090 Citrullus lanatus HOM05D005411 ORTHO05D006463 2.3e-40 169.5 111 76.6
MBI18_g42863_MAGBIO Magnolia biondii HOM05D005411 ORTHO05D006463 3.0e-40 169.1 173 59.0
vmacro11335 Vaccinium macrocarpon HOM05D005411 ORTHO05D006463 3.0e-40 169.1 194 56.7
vmacro22820 Vaccinium macrocarpon HOM05D005411 ORTHO05D006463 3.0e-40 169.1 194 56.7
TWI60G1258 Tripterygium wilfordii HOM05D005411 ORTHO05D006463 5.2e-40 168.3 175 57.7
CsaV3_4G005950 Cucumis sativus L. HOM05D005411 ORTHO05D006463 6.8e-40 167.9 166 56.6
PSO478G4730 Papaver somniferum HOM05D005411 ORTHO05D006463 8.9e-40 167.5 152 61.8
PSO782G3895 Papaver somniferum HOM05D005411 ORTHO05D006463 8.9e-40 167.5 152 61.8
Ciclev10022634m.g Citrus clementina HOM05D005411 ORTHO05D006463 3.4e-39 165.6 172 57.6
Phvul.002G289800 Phaseolus vulgaris HOM05D005411 ORTHO05D006463 3.4e-39 165.6 119 72.3
ECA233G5385 Erigeron canadensis HOM05D005411 ORTHO05D006463 9.8e-39 164.1 120 70.8
A01p14570 Brassica napus HOM05D005411 ORTHO05D006463 2.2e-38 162.9 131 67.2
BraA01t01399Z Brassica rapa HOM05D005411 ORTHO05D006463 2.2e-38 162.9 131 67.2
Carub.0007s1784 Capsella rubella HOM05D005411 ORTHO05D006463 2.2e-38 162.9 131 68.7
CARHR230670 Cardamine hirsuta HOM05D005411 ORTHO05D006463 2.9e-38 162.5 131 67.2
SalBow4G3209 Salvia bowleyana HOM05D005411 ORTHO05D006463 4.9e-38 161.8 111 73.0
Thhalv10026496m.g Eutrema salsugineum HOM05D005411 ORTHO05D006463 6.4e-38 161.4 134 67.9
AL7G30140 Arabidopsis lyrata HOM05D005411 ORTHO05D006463 8.3e-38 161.0 131 67.9
BcaC09g51012 Brassica carinata HOM05D005411 ORTHO05D006463 8.3e-38 161.0 131 67.2
BolC1t01733H Brassica oleracea HOM05D005411 ORTHO05D006463 8.3e-38 161.0 131 67.2
BraA03t14482Z Brassica rapa HOM05D000022 ORTHO05D000071 8.3e-38 161.0 126 68.3
THA.LOC104814574 Tarenaya hassleriana HOM05D005411 ORTHO05D006463 8.3e-38 161.0 114 73.7
HanXRQChr13g0394241 Helianthus annuus HOM05D005411 ORTHO05D006463 1.1e-37 160.6 175 56.6
ATR0680G335 Amborella trichopoda HOM05D005411 ORTHO05D006463 1.8e-37 159.8 119 70.6
MSTRG.25610 Avicennia marina HOM05D005411 ORTHO05D006463 2.4e-37 159.5 154 56.5
CiPaw.12G092800 Carya illinoinensis HOM05D005411 ORTHO05D006463 2.4e-37 159.5 155 60.6
A03p54210 Brassica napus HOM05D005411 ORTHO05D006463 4.1e-37 158.7 128 68.0
Medtr8g098255 Medicago truncatula HOM05D005411 ORTHO05D006463 4.1e-37 158.7 143 58.7
BcaNung01456 Brassica carinata HOM05D005411 ORTHO05D006463 7.0e-37 157.9 126 66.7
C07p52580 Brassica napus HOM05D000022 ORTHO05D000071 7.0e-37 157.9 126 66.7
BolC7t45755H Brassica oleracea HOM05D005411 ORTHO05D006463 7.0e-37 157.9 126 66.7
Psat7g033000 Pisum sativum HOM05D005411 ORTHO05D006463 1.6e-36 156.8 118 65.3
AT4G23330 Arabidopsis thaliana HOM05D005411 ORTHO05D006463 2.0e-36 156.4 115 72.2
Cfa012226 Carpinus fangiana HOM05D005411 ORTHO05D006463 2.0e-36 156.4 132 65.2
BcaC03g18356 Brassica carinata HOM05D005411 ORTHO05D006463 5.9e-36 154.8 129 66.7
C02p64340 Brassica napus HOM05D005411 ORTHO05D006463 5.9e-36 154.8 129 66.7
BcaNung03266 Brassica carinata HOM05D005411 ORTHO05D006463 1.3e-35 153.7 115 71.3
Lj8E221T1 Lonicera japonica HOM05D005411 ORTHO05D006463 1.3e-35 153.7 103 73.8
Rhsim07G0090400 Rhododendron simsii HOM05D005411 ORTHO05D006463 1.3e-35 153.7 131 69.5
TPR.G12871 Trifolium pratense HOM05D005411 ORTHO05D006463 1.3e-35 153.7 108 69.4
Lj4g0004308 Lotus japonicus HOM05D005411 ORTHO05D006463 1.7e-35 153.3 111 71.2
unitig_46.g18551 Utricularia gibba HOM05D005411 ORTHO05D006463 3.9e-35 152.1 118 67.8
Ca_17530_v3 Cicer arietinum L. HOM05D005411 ORTHO05D006463 1.5e-34 150.2 152 55.9
Nn1g01526 Nelumbo nucifera HOM05D005411 ORTHO05D006463 1.9e-34 149.8 156 55.1
TAR374G0701 Trochodendron aralioides HOM05D005411 ORTHO05D006463 7.3e-34 147.9 135 63.0
Os07g0483400 Oryza sativa ssp. japonica HOM05D005411 ORTHO05D006463 3.6e-33 145.6 110 65.5
SGA_v2.0_scaffold173G39183 Striga asiatica HOM05D005411 ORTHO05D006463 3.6e-33 145.6 107 68.2
FAN13G2772 Fragaria x ananassa HOM05D005411 ORTHO05D006463 3.1e-32 142.5 97 77.3
FAN18G0348 Fragaria x ananassa HOM05D005411 ORTHO05D006463 4.0e-32 142.1 91 80.2
arahy.Tifrunner.gnm1.ann1.FJ1DNZ Arachis hypogaea HOM05D005411 ORTHO05D006463 1.5e-31 140.2 93 73.1
arahy.Tifrunner.gnm1.ann1.P2DUDW Arachis hypogaea HOM05D005411 ORTHO05D006463 1.5e-31 140.2 93 73.1
Thecc.03G279100 Theobroma cacao HOM05D005411 ORTHO05D006463 1.5e-31 140.2 154 55.2
MELO3C016353.2 Cucumis melo HOM05D005411 ORTHO05D006463 3.4e-31 139.0 144 54.2
Sabra01G0078400 Salix brachista HOM05D005411 ORTHO05D006463 5.8e-31 138.3 96 75.0
Glyma.05G208200 Glycine max HOM05D005411 ORTHO05D006463 1.3e-30 137.1 104 68.3
FAN04G3034 Fragaria x ananassa HOM05D005411 ORTHO05D006463 3.7e-30 135.6 144 58.3
Aqoxy7G00317 Aquilegia oxysepala HOM05D005411 ORTHO05D006463 6.4e-30 134.8 131 60.3
Hund16039 Selenicereus undatus HOM05D005411 ORTHO05D006463 1.9e-29 133.3 114 60.5
AUR62022799 Chenopodium quinoa HOM05D005411 ORTHO05D006463 3.2e-29 132.5 92 67.4
FAN08G0497 Fragaria x ananassa HOM05D005411 ORTHO05D006463 9.2e-29 131.0 144 56.2
VMungo0251G3187 Vigna mungo HOM05D005411 ORTHO05D006463 9.2e-29 131.0 97 68.0
Duzib205G1808 Durio zibethinus HOM05D005411 ORTHO05D006463 1.2e-28 130.6 93 75.3
Aa31LG9G10800 Aethionema arabicum HOM05D005411 ORTHO05D006463 3.5e-28 129.0 91 71.4
CDE11G0686 Ceratophyllum demersum HOM05D003133 ORTHO05D006463 3.0e-27 125.9 95 67.4
SEGI_09083 Sequoiadendron giganteum HOM05D005411 ORTHO05D006463 1.9e-26 123.2 105 59.0
CSS0044618 Camellia sinensis var. sinensis HOM05D005411 ORTHO05D006463 1.6e-25 120.2 107 68.2
BolC5t34770H Brassica oleracea HOM05D005411 ORTHO05D006463 3.1e-24 115.9 94 69.1
EL10Ac2g04672 Beta vulgaris HOM05D005411 ORTHO05D006463 8.9e-24 114.4 82 63.4
C01p18020 Brassica napus HOM05D005411 ORTHO05D006463 1.2e-23 114.0 94 66.0
AUR62012163 Chenopodium quinoa HOM05D005411 ORTHO05D006463 1.2e-23 114.0 131 48.1
Zm00001eb104990 Zea mays HOM05D005411 ORTHO05D006463 1.2e-23 114.0 86 64.0
BcaNung00981 Brassica carinata HOM05D005411 ORTHO05D006463 1.5e-23 113.6 143 51.7
Gohir.D03G151300 Gossypium hirsutum HOM05D005411 ORTHO05D006463 3.4e-23 112.5 132 52.3
Sc01g0009600 Simmondsia chinensis HOM05D005411 ORTHO05D006463 3.4e-23 112.5 102 55.9
Hma1.2p1_0377F.1_g139290 Hydrangea macrophylla HOM05D005411 ORTHO05D006463 3.7e-22 109.0 112 61.6
Pp3c11_2200 Physcomitrium patens HOM05D005411 ORTHO05D006463 2.4e-21 106.3 138 45.7
BcaNung00977 Brassica carinata HOM05D005411 ORTHO05D006463 7.1e-21 104.8 68 76.5
CDE09G0994 Ceratophyllum demersum HOM05D005411 ORTHO05D006463 1.6e-20 103.6 76 67.1
Mapoly0008s0209 Marchantia polymorpha HOM05D005411 ORTHO05D006463 8.6e-19 97.8 99 47.5
Atru.chr9.2185 Acer truncatum HOM05D005411 ORTHO05D006463 3.3e-18 95.9 90 58.9
Oeu047371.1 Olea europaea HOM05D005411 ORTHO05D006463 4.3e-18 95.5 66 72.7
Duzib084G0828 Durio zibethinus HOM05D005411 ORTHO05D006463 2.1e-17 93.2 71 66.2
AagrBONN_evm.TU.Sc2ySwM_369.479 Anthoceros agrestis HOM05D005411 ORTHO05D006463 5.2e-16 88.6 84 51.2
SHI07138 Sapria himalayana HOM05D005411 ORTHO05D006463 9.9e-15 84.3 70 58.6
BcaC01g04135 Brassica carinata HOM05D005411 ORTHO05D006463 4.1e-13 79.0 56 69.6
Potri.003G127900 Populus trichocarpa HOM05D005411 ORTHO05D006463 4.1e-13 79.0 111 49.5
SMO329G0027 Selaginella moellendorffii HOM05D005411 ORTHO05D006463 1.3e-11 73.9 78 47.4
SMO358G0504 Selaginella moellendorffii HOM05D005411 ORTHO05D006463 1.3e-11 73.9 78 47.4
BolC3t16740H Brassica oleracea HOM05D005411 ORTHO05D006463 1.7e-11 73.6 68 61.8
C03p44770 Brassica napus HOM05D005411 ORTHO05D006463 2.3e-11 73.2 68 61.8
CSS0004409 Camellia sinensis var. sinensis HOM05D005411 ORTHO05D006463 2.1e-09 66.6 53 73.6
CSS0027281 Camellia sinensis var. sinensis HOM05D005411 ORTHO05D006463 2.1e-09 66.6 53 73.6
HPP92_001497 Vanilla planifolia HOM05D005411 ORTHO05D006463 2.1e-09 66.6 46 67.4
BcaB05g22557 Brassica carinata HOM05D002513 ORTHO05D002720 2.8e-09 66.2 89 48.3
Sabra17G0003100 Salix brachista HOM05D005411 ORTHO05D006463 2.0e-07 60.1 99 44.4
Sabra17G0003800 Salix brachista HOM05D005411 ORTHO05D006463 2.0e-07 60.1 99 44.4
Sabra18G0123000 Salix brachista HOM05D005411 ORTHO05D006463 7.6e-07 58.2 99 43.4
PGSC0003DMG402012339 Solanum tuberosum HOM05D005411 ORTHO05D006463 9.9e-07 57.8 53 56.6
Eucgr.H02258 Eucalyptus grandis HOM05D005411 ORTHO05D006463 1.7e-06 57.0 36 83.3
Sabra14G0123800 Salix brachista HOM05D005411 ORTHO05D006463 2.9e-06 56.2 99 42.4
Sabra17G0034500 Salix brachista HOM05D005411 ORTHO05D006463 2.9e-06 56.2 74 50.0


User provided reference genes

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