Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0034048 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D021063 4.8e-114 414.8 264 100.0
CSS0023750 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D021063 7.3e-78 294.7 289 66.4
CSS0029738 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 5.4e-73 278.5 283 64.7
Actinidia07470 Actinidia chinensis HOM05D004072 ORTHO05D005933 9.5e-54 214.5 284 52.8
vmacro03398 Vaccinium macrocarpon HOM05D004072 ORTHO05D005933 5.4e-49 198.7 284 52.1
Dinv32181 Davidia involucrata HOM05D004072 ORTHO05D005933 4.2e-33 146.0 303 42.6
GSVIVG01021613001 Vitis vinifera HOM05D004072 ORTHO05D005933 7.9e-32 141.7 287 42.9
TAR626G0585 Trochodendron aralioides HOM05D004072 ORTHO05D005933 1.5e-30 137.5 274 42.7
Rhsim13G0119900 Rhododendron simsii HOM05D004072 ORTHO05D005933 3.3e-30 136.3 297 44.8
Nn3g20249 Nelumbo nucifera HOM05D004072 ORTHO05D005933 2.8e-29 133.3 268 45.5
Cc09_g08230 Coffea canephora HOM05D004072 ORTHO05D005933 1.3e-26 124.4 310 42.3
TAR627G0650 Trochodendron aralioides HOM05D004072 ORTHO05D005933 1.7e-26 124.0 286 39.2
Lj1A1163T36 Lonicera japonica HOM05D004072 ORTHO05D005933 1.2e-24 117.9 298 41.3
Atru.chr10.895 Acer truncatum HOM05D004072 ORTHO05D005933 7.9e-24 115.2 288 37.8
Gohir.A01G139400 Gossypium hirsutum HOM05D004072 ORTHO05D005933 7.9e-24 115.2 287 39.4
Haze_05771 Corylus avellana HOM05D004072 ORTHO05D005933 1.9e-22 110.5 294 37.8
CiPaw.09G116100 Carya illinoinensis HOM05D004072 ORTHO05D005933 9.6e-22 108.2 290 36.6
SalBow8G4752 Salvia bowleyana HOM05D004072 ORTHO05D005933 2.8e-21 106.7 295 36.9
DCAR_003864 Daucus carota HOM05D004072 ORTHO05D005933 4.8e-21 105.9 284 38.0
RcHm_v2.0_Chr5g0015701 Rosa chinensis HOM05D004072 ORTHO05D005933 4.8e-21 105.9 283 35.7
MD10G1254200 Malus domestica HOM05D004072 ORTHO05D005933 3.1e-20 103.2 291 37.5
COL.COLO4_17682 Corchorus olitorius HOM05D004072 ORTHO05D005933 2.6e-19 100.1 303 35.0
Actinidia36003 Actinidia chinensis HOM05D004072 ORTHO05D021063 3.4e-19 99.8 86 68.6
Manes.06G055700 Manihot esculenta HOM05D004072 ORTHO05D005933 3.4e-19 99.8 286 36.7
Duzib052G1035 Durio zibethinus HOM05D004072 ORTHO05D005933 7.6e-19 98.6 290 35.9
CiPaw.10G086200 Carya illinoinensis HOM05D004072 ORTHO05D005933 1.1e-17 94.7 288 36.8
Oeu040089.1 Olea europaea HOM05D004072 ORTHO05D005933 1.4e-17 94.4 284 35.6
Manes.14G122228 Manihot esculenta HOM05D004072 ORTHO05D005933 2.5e-17 93.6 285 43.2
MSTRG.16285 Avicennia marina HOM05D004072 ORTHO05D005933 3.2e-17 93.2 289 33.9
PGR031G0553 Punica granatum HOM05D004072 ORTHO05D005933 4.2e-17 92.8 290 34.1
SGA_v2.0_scaffold223G42858 Striga asiatica HOM05D004072 ORTHO05D005933 4.2e-17 92.8 302 33.8
Duzib132G0425 Durio zibethinus HOM05D004072 ORTHO05D005933 1.6e-16 90.9 303 34.3
Migut.M01885 Erythranthe guttata HOM05D004072 ORTHO05D005933 1.8e-15 87.4 302 35.1
FAN16G0609 Fragaria x ananassa HOM05D004072 ORTHO05D005933 2.3e-15 87.0 285 34.0
CAN.G660.42 Capsicum annuum HOM05D004072 ORTHO05D005933 1.1e-14 84.7 300 34.7
Gorai.002G162800 Gossypium raimondii HOM05D004072 ORTHO05D005933 1.5e-14 84.3 300 34.0
Potri.011G090200 Populus trichocarpa HOM05D004072 ORTHO05D005933 2.5e-14 83.6 263 34.6
CAN.G660.43 Capsicum annuum HOM05D004072 ORTHO05D005933 3.3e-14 83.2 301 33.6
Thecc.02G012200 Theobroma cacao HOM05D004072 ORTHO05D005933 9.6e-14 81.6 291 34.0
Prupe.4G089200 Prunus persica HOM05D004072 ORTHO05D005933 2.1e-13 80.5 301 31.2
Sabra16G0235400 Salix brachista HOM05D004072 ORTHO05D005933 3.7e-13 79.7 276 33.7
QL05p053312 Quercus lobata HOM05D004072 ORTHO05D005933 6.3e-13 79.0 299 34.8
Cpa.g.sc17.80 Carica papaya HOM05D004072 ORTHO05D021063 1.4e-12 77.8 288 31.6
FAN21G2972 Fragaria x ananassa HOM05D004072 ORTHO05D005933 1.4e-12 77.8 285 31.9
Nitab4.5_0008398g0020 Nicotiana tabacum HOM05D004072 ORTHO05D005933 4.1e-12 76.3 286 32.2
FvH4_3g09950 Fragaria vesca HOM05D004072 ORTHO05D005933 5.3e-12 75.9 285 32.3
FAN11G0415 Fragaria x ananassa HOM05D004072 ORTHO05D005933 5.3e-12 75.9 285 32.3
MD05G1274500 Malus domestica HOM05D004072 ORTHO05D005933 5.3e-12 75.9 290 32.1
Sopen02g019350 Solanum pennellii HOM05D004072 ORTHO05D005933 9.0e-12 75.1 279 34.1
Peaxi162Scf00670g00114 Petunia axillaris HOM05D004072 ORTHO05D005933 1.2e-11 74.7 241 35.7
Atru.chr10.903 Acer truncatum HOM05D004072 ORTHO05D021063 1.5e-11 74.3 186 35.5
Glyma.15G192800 Glycine max HOM05D004072 ORTHO05D005933 2.0e-11 73.9 281 33.8
Glyma.09G084500 Glycine max HOM05D004072 ORTHO05D005933 2.6e-11 73.6 282 35.5
Nitab4.5_0001181g0040 Nicotiana tabacum HOM05D004072 ORTHO05D005933 2.6e-11 73.6 281 32.4
PSO675G3632 Papaver somniferum HOM05D004072 ORTHO05D005933 3.4e-11 73.2 297 35.4
Aqoxy1G01646_Aqoxy1G01645 Aquilegia oxysepala HOM05D004072 ORTHO05D005933 4.5e-11 72.8 288 34.0
Solyc02g070260.4 Solanum lycopersicum HOM05D004072 ORTHO05D005933 4.5e-11 72.8 291 33.3
Gohir.D01G131100 Gossypium hirsutum HOM05D004072 ORTHO05D005933 7.6e-11 72.0 300 33.0
AUR62038603 Chenopodium quinoa HOM05D004072 ORTHO05D005933 1.7e-10 70.9 260 30.8
ECA236G2867 Erigeron canadensis HOM05D004072 ORTHO05D005933 1.7e-10 70.9 261 38.7
FAN25G0515 Fragaria x ananassa HOM05D004072 ORTHO05D005933 6.5e-10 68.9 285 31.2
PSO541G2055 Papaver somniferum HOM05D004072 ORTHO05D005933 1.1e-09 68.2 276 34.4
Potri.001G357700 Populus trichocarpa HOM05D004072 ORTHO05D005933 1.4e-09 67.8 270 33.0
Sc24g0001460 Simmondsia chinensis HOM05D004072 ORTHO05D005933 1.4e-09 67.8 308 30.2
Ah.14g086190 Amaranthus hybridus HOM05D004072 ORTHO05D005933 5.5e-09 65.9 244 34.0
HanXRQChr04g0119071 Helianthus annuus HOM05D004072 ORTHO05D005933 9.3e-09 65.1 251 35.1
TPR.G28615 Trifolium pratense HOM05D004072 ORTHO05D005933 1.2e-08 64.7 265 32.8
ClCG01G025080 Citrullus lanatus HOM05D004072 ORTHO05D005933 2.1e-08 63.9 297 31.0
Eucgr.E02482 Eucalyptus grandis HOM05D004072 ORTHO05D005933 2.1e-08 63.9 280 31.4
C03p22430 Brassica napus HOM05D004072 ORTHO05D005933 2.7e-08 63.5 276 29.3
arahy.Tifrunner.gnm1.ann1.39P5NE Arachis hypogaea HOM05D004072 ORTHO05D005933 3.6e-08 63.2 208 37.5
Lalb_Chr08g0233191 Lupinus albus HOM05D004072 ORTHO05D005933 6.1e-08 62.4 256 32.8
Medtr2g048210 Medicago truncatula HOM05D004072 ORTHO05D005933 1.0e-07 61.6 249 31.3
Sp4g16960 Schrenkiella parvula HOM05D004072 ORTHO05D005933 1.0e-07 61.6 267 29.6
arahy.Tifrunner.gnm1.ann1.WCP5HM Arachis hypogaea HOM05D004072 ORTHO05D005933 1.8e-07 60.8 271 32.1
TWI73G0101 Tripterygium wilfordii HOM05D004072 ORTHO05D005933 2.3e-07 60.5 311 29.6
AL4G30670 Arabidopsis lyrata HOM05D004072 ORTHO05D005933 3.0e-07 60.1 277 30.0
Thhalv10016130m.g Eutrema salsugineum HOM05D004072 ORTHO05D005933 3.9e-07 59.7 292 29.5
ATR0165G006 Amborella trichopoda HOM05D004072 ORTHO05D005933 5.1e-07 59.3 306 31.7
Aa31LG10G6650 Aethionema arabicum HOM05D004072 ORTHO05D005933 6.7e-07 58.9 260 28.1
Ca_02513_v3 Cicer arietinum L. HOM05D004072 ORTHO05D005933 1.5e-06 57.8 230 31.7
MELO3C007083.2 Cucumis melo HOM05D004072 ORTHO05D005933 1.5e-06 57.8 303 30.4
CANSAT35G1345 Cannabis sativa HOM05D004072 ORTHO05D005933 2.5e-06 57.0 291 38.1
BraA03t11178Z Brassica rapa HOM05D004072 ORTHO05D005933 3.3e-06 56.6 273 27.8


User provided reference genes

Program Settings