Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0034044 Camellia sinensis var. sinensis HOM05D005269 ORTHO05D006429 2.3e-63 245.4 119 100.0
Actinidia33802 Actinidia chinensis HOM05D005269 ORTHO05D006429 1.5e-43 179.5 126 73.8
vmacro22190 Vaccinium macrocarpon HOM05D005269 ORTHO05D006429 2.2e-42 175.6 120 75.8
Rhsim09G0214100 Rhododendron simsii HOM05D005269 ORTHO05D006429 1.1e-41 173.3 143 66.4
Dinv17239 Davidia involucrata HOM05D005269 ORTHO05D006429 1.1e-38 163.3 134 67.9
Hma1.2p1_0419F.1_g149570 Hydrangea macrophylla HOM05D005269 ORTHO05D006429 7.6e-35 150.6 134 62.7
Cc11_g00500 Coffea canephora HOM05D005269 ORTHO05D006429 2.1e-32 142.5 122 61.5
Sopen09g034380 Solanum pennellii HOM05D005269 ORTHO05D006429 1.0e-31 140.2 116 61.2
Solyc09g091450.3 Solanum lycopersicum HOM05D005269 ORTHO05D006429 2.3e-31 139.0 116 60.3
PGSC0003DMG400029616 Solanum tuberosum HOM05D005269 ORTHO05D006429 3.9e-31 138.3 116 60.3
MSTRG.4345 Avicennia marina HOM05D005269 ORTHO05D006429 5.1e-31 137.9 118 60.2
THA.LOC104820303 Tarenaya hassleriana HOM05D005269 ORTHO05D006429 3.3e-30 135.2 121 56.2
TAR629G0465 Trochodendron aralioides HOM05D005269 ORTHO05D006429 3.3e-30 135.2 124 59.7
Lj7A504G56 Lonicera japonica HOM05D005269 ORTHO05D006429 9.6e-30 133.7 122 58.2
CiPaw.05G211300 Carya illinoinensis HOM05D005269 ORTHO05D006429 1.3e-29 133.3 120 56.7
Sp1g08440 Schrenkiella parvula HOM05D005269 ORTHO05D006429 1.3e-29 133.3 120 57.5
Peaxi162Scf00047g01229 Petunia axillaris HOM05D005269 ORTHO05D006429 1.6e-29 132.9 125 60.0
Ciclev10033086m.g Citrus clementina HOM05D005269 ORTHO05D006429 2.1e-29 132.5 123 52.8
CAN.G500.91 Capsicum annuum HOM05D005269 ORTHO05D006429 6.2e-29 131.0 115 57.4
Aa31LG1G5120 Aethionema arabicum HOM05D005269 ORTHO05D006429 8.2e-29 130.6 120 55.0
PGR004G2648 Punica granatum HOM05D005269 ORTHO05D006429 4.1e-28 128.3 118 55.9
BcaC05g24843 Brassica carinata HOM05D005269 ORTHO05D006429 5.3e-28 127.9 120 55.0
BolC5t29544H Brassica oleracea HOM05D005269 ORTHO05D006429 5.3e-28 127.9 120 55.0
Prupe.2G330200 Prunus persica HOM05D005269 ORTHO05D006429 5.3e-28 127.9 127 58.3
GSVIVG01024265001 Vitis vinifera HOM05D005269 ORTHO05D006429 6.9e-28 127.5 118 54.2
Cpa.g.sc43.150 Carica papaya HOM05D005269 ORTHO05D006429 9.0e-28 127.1 122 53.3
Thhalv10009118m.g Eutrema salsugineum HOM05D005269 ORTHO05D006429 1.2e-27 126.7 120 54.2
TAR374G1160 Trochodendron aralioides HOM05D005269 ORTHO05D006429 1.2e-27 126.7 122 56.6
AL1G20410 Arabidopsis lyrata HOM05D005269 ORTHO05D006429 1.5e-27 126.3 120 52.5
CANSAT78G2182 Cannabis sativa HOM05D005269 ORTHO05D006429 1.5e-27 126.3 110 55.5
Haze_00354 Corylus avellana HOM05D005269 ORTHO05D006429 1.5e-27 126.3 127 53.5
A06p06530 Brassica napus HOM05D005269 ORTHO05D006429 2.0e-27 125.9 120 54.2
Oeu034712.1 Olea europaea HOM05D005269 ORTHO05D006429 2.0e-27 125.9 132 54.5
PGSC0003DMG400019109 Solanum tuberosum HOM05D005269 ORTHO05D006429 2.0e-27 125.9 130 54.6
BraA06t23864Z Brassica rapa HOM05D005269 ORTHO05D006429 2.6e-27 125.6 120 54.2
MELO3C005384.2 Cucumis melo HOM05D005269 ORTHO05D006429 2.6e-27 125.6 128 55.5
EL10Ac4g10063 Beta vulgaris HOM05D005269 ORTHO05D006429 3.4e-27 125.2 122 53.3
CARHR009820 Cardamine hirsuta HOM05D005269 ORTHO05D006429 3.4e-27 125.2 121 53.7
DCAR_009029 Daucus carota HOM05D005269 ORTHO05D006429 5.8e-27 124.4 123 54.5
Sabra19G0053500 Salix brachista HOM05D005269 ORTHO05D006429 5.8e-27 124.4 119 52.9
AT1G09815 Arabidopsis thaliana HOM05D005269 ORTHO05D006429 7.6e-27 124.0 120 50.8
MD07G1311000 Malus domestica HOM05D005269 ORTHO05D006429 7.6e-27 124.0 133 54.1
Peaxi162Scf00536g00089 Petunia axillaris HOM05D005269 ORTHO05D006429 7.6e-27 124.0 116 55.2
Atru.chr12.1824 Acer truncatum HOM05D005269 ORTHO05D006429 1.3e-26 123.2 119 52.1
Eucgr.I00374 Eucalyptus grandis HOM05D005269 ORTHO05D006429 1.3e-26 123.2 117 53.0
Potri.019G042900 Populus trichocarpa HOM05D005269 ORTHO05D006429 2.2e-26 122.5 116 54.3
TWI32G0228 Tripterygium wilfordii HOM05D005269 ORTHO05D006429 2.2e-26 122.5 134 49.3
Carub.0001s0919 Capsella rubella HOM05D005269 ORTHO05D006429 5.0e-26 121.3 120 50.8
Thecc.05G226600 Theobroma cacao HOM05D005269 ORTHO05D006429 5.0e-26 121.3 123 54.5
Manes.09G130300 Manihot esculenta HOM05D005269 ORTHO05D006429 6.5e-26 120.9 123 53.7
Nitab4.5_0001769g0050 Nicotiana tabacum HOM05D005269 ORTHO05D006429 6.5e-26 120.9 125 52.8
CsaV3_5G005690 Cucumis sativus L. HOM05D005269 ORTHO05D006429 1.1e-25 120.2 128 53.9
ClCG01G005450 Citrullus lanatus HOM05D005269 ORTHO05D006429 1.9e-25 119.4 130 51.5
Cfa016104 Carpinus fangiana HOM05D005269 ORTHO05D006429 2.5e-25 119.0 135 49.6
AUR62006583 Chenopodium quinoa HOM05D005269 ORTHO05D006429 3.2e-25 118.6 120 56.7
Sc16g0010860 Simmondsia chinensis HOM05D005269 ORTHO05D006429 3.2e-25 118.6 117 54.7
Ah.04g159550 Amaranthus hybridus HOM05D005269 ORTHO05D006429 4.2e-25 118.2 120 50.0
Thecc.05G226200 Theobroma cacao HOM05D005269 ORTHO05D006429 5.5e-25 117.9 123 53.7
ATR0568G075 Amborella trichopoda HOM05D005269 ORTHO05D006429 9.3e-25 117.1 125 51.2
COL.COLO4_12968 Corchorus olitorius HOM05D005269 ORTHO05D006429 9.3e-25 117.1 120 51.7
RcHm_v2.0_Chr2g0117101 Rosa chinensis HOM05D005269 ORTHO05D006429 9.3e-25 117.1 118 48.3
Potri.013G076400 Populus trichocarpa HOM05D005269 ORTHO05D006429 1.2e-24 116.7 118 56.8
Nn1g09278 Nelumbo nucifera HOM05D005269 ORTHO05D006429 1.6e-24 116.3 121 53.7
Thecc.05G226400 Theobroma cacao HOM05D005269 ORTHO05D006429 1.6e-24 116.3 117 53.8
unitig_52.g17685 Utricularia gibba HOM05D005269 ORTHO05D006429 2.1e-24 115.9 116 51.7
Migut.H00004 Erythranthe guttata HOM05D005269 ORTHO05D006429 2.7e-24 115.5 131 49.6
Gorai.007G246800 Gossypium raimondii HOM05D005269 ORTHO05D006429 2.7e-24 115.5 118 50.8
HanXRQChr17g0540921 Helianthus annuus HOM05D005269 ORTHO05D006429 2.7e-24 115.5 129 52.7
Solyc05g053520.3 Solanum lycopersicum HOM05D005269 ORTHO05D006429 2.7e-24 115.5 128 53.1
FAN26G3478 Fragaria x ananassa HOM05D005269 ORTHO05D006429 3.5e-24 115.2 116 56.9
Gohir.D11G234500 Gossypium hirsutum HOM05D005269 ORTHO05D006429 3.5e-24 115.2 118 51.7
Psat7g094200 Pisum sativum HOM05D005269 ORTHO05D006429 3.5e-24 115.2 118 48.3
Sopen05g032040 Solanum pennellii HOM05D005269 ORTHO05D006429 3.5e-24 115.2 128 52.3
Psat7g094160 Pisum sativum HOM05D005269 ORTHO05D006429 4.6e-24 114.8 118 49.2
CAN.G17.24 Capsicum annuum HOM05D005269 ORTHO05D006429 6.1e-24 114.4 123 53.7
Duzib128G1401 Durio zibethinus HOM05D005269 ORTHO05D006429 6.1e-24 114.4 123 53.7
Glyma.05G124300 Glycine max HOM05D005269 ORTHO05D006429 6.1e-24 114.4 111 51.4
Sabra13G0065600 Salix brachista HOM05D005269 ORTHO05D006429 6.1e-24 114.4 116 52.6
SGA_v2.0_scaffold18G08210 Striga asiatica HOM05D005269 ORTHO05D006429 6.1e-24 114.4 117 51.3
PSO063G4725 Papaver somniferum HOM05D005269 ORTHO05D006429 7.9e-24 114.0 117 51.3
FAN23G2200 Fragaria x ananassa HOM05D005269 ORTHO05D006429 1.0e-23 113.6 115 56.5
Eucgr.L00611 Eucalyptus grandis HOM05D005269 ORTHO05D006429 1.3e-23 113.2 117 50.4
Gohir.A11G225900 Gossypium hirsutum HOM05D005269 ORTHO05D006429 1.3e-23 113.2 118 50.8
PSO782G4777 Papaver somniferum HOM05D005269 ORTHO05D006429 1.3e-23 113.2 117 51.3
arahy.Tifrunner.gnm1.ann1.UWAC6K Arachis hypogaea HOM05D005269 ORTHO05D006429 1.8e-23 112.8 111 49.5
AUR62000236 Chenopodium quinoa HOM05D005269 ORTHO05D006429 2.3e-23 112.5 120 54.2
FvH4_1g22780 Fragaria vesca HOM05D005269 ORTHO05D006429 2.3e-23 112.5 116 55.2
Nitab4.5_0001066g0040 Nicotiana tabacum HOM05D005269 ORTHO05D006429 2.3e-23 112.5 127 50.4
MBI04_g30790_MAGBIO Magnolia biondii HOM05D005269 ORTHO05D006429 3.0e-23 112.1 117 52.1
Gohir.A13G001000 Gossypium hirsutum HOM05D005269 ORTHO05D006429 3.9e-23 111.7 118 50.8
Lsat_1_v5_gn_9_46181 Lactuca sativa HOM05D005269 ORTHO05D006429 5.1e-23 111.3 130 50.8
ECA232G2798 Erigeron canadensis HOM05D005251 ORTHO05D006680 6.7e-23 110.9 135 48.1
Sed0022400 Sechium edule HOM05D005269 ORTHO05D006429 1.1e-22 110.2 119 51.3
Hund07408 Selenicereus undatus HOM05D005269 ORTHO05D006429 1.5e-22 109.8 121 50.4
FAN28G1075 Fragaria x ananassa HOM05D005269 ORTHO05D006429 2.5e-22 109.0 110 52.7
FAN19G2412 Fragaria x ananassa HOM05D005269 ORTHO05D006429 3.3e-22 108.6 116 54.3
Sed0009591 Sechium edule HOM05D005269 ORTHO05D006429 7.4e-22 107.5 130 47.7
Aqoxy6G02173 Aquilegia oxysepala HOM05D005269 ORTHO05D006429 1.6e-21 106.3 91 54.9
VMungo0251G2623 Vigna mungo HOM05D005269 ORTHO05D006429 2.2e-21 105.9 119 49.6
Ah.06g194960 Amaranthus hybridus HOM05D005269 ORTHO05D006429 4.8e-21 104.8 115 47.0
arahy.Tifrunner.gnm1.ann1.FKKB7G Arachis hypogaea HOM05D005269 ORTHO05D006429 4.8e-21 104.8 116 47.4
Lj4g0020860 Lotus japonicus HOM05D005269 ORTHO05D006429 4.8e-21 104.8 109 47.7
Actinidia04559 Actinidia chinensis HOM05D005269 ORTHO05D006429 6.3e-21 104.4 94 64.9
C05p07920 Brassica napus HOM05D005269 ORTHO05D006429 8.2e-21 104.0 66 69.7
Gorai.013G185000 Gossypium raimondii HOM05D005269 ORTHO05D006429 1.1e-20 103.6 112 47.3
Phvul.002G201100 Phaseolus vulgaris HOM05D005269 ORTHO05D006429 1.8e-20 102.8 117 49.6
Ca_18303_v3 Cicer arietinum L. HOM05D005269 ORTHO05D006429 2.4e-20 102.4 112 44.6
Medtr4g094465 Medicago truncatula HOM05D005269 ORTHO05D006429 4.1e-20 101.7 121 46.3
Phvul.002G201200 Phaseolus vulgaris HOM05D005269 ORTHO05D006429 4.1e-20 101.7 126 42.9
Gohir.D13G162800 Gossypium hirsutum HOM05D005269 ORTHO05D006429 3.4e-19 98.6 113 46.0
Lalb_Chr07g0189121 Lupinus albus HOM05D005269 ORTHO05D006429 2.2e-18 95.9 110 46.4
CDE02G3654 Ceratophyllum demersum HOM05D005269 ORTHO05D006429 3.8e-18 95.1 111 44.1
Mapoly0002s0066 Marchantia polymorpha HOM05D005269 ORTHO05D006429 5.0e-18 94.7 136 47.1
CDE11G1263 Ceratophyllum demersum HOM05D005269 ORTHO05D006429 1.1e-17 93.6 118 44.1
Glyma.08G079500 Glycine max HOM05D005269 ORTHO05D006429 1.4e-17 93.2 100 51.0
Gohir.A13G157700 Gossypium hirsutum HOM05D005269 ORTHO05D006429 9.4e-17 90.5 102 47.1
TPR.G23807 Trifolium pratense HOM05D005269 ORTHO05D006429 1.0e-15 87.0 115 40.0
HPP92_001933 Vanilla planifolia HOM05D005269 ORTHO05D006429 2.3e-15 85.9 129 42.6
Glyma.15G135000 Glycine max HOM05D005269 ORTHO05D006429 3.9e-15 85.1 104 43.3
Pp3c4_21450 Physcomitrium patens HOM05D005269 ORTHO05D006429 1.5e-14 83.2 81 51.9
TPR.G31897 Trifolium pratense HOM05D005269 ORTHO05D006429 1.5e-14 83.2 109 46.8
AagrBONN_evm.TU.Sc2ySwM_344.2125 Anthoceros agrestis HOM05D005269 ORTHO05D006429 2.0e-14 82.8 59 59.3
SEGI_20967 Sequoiadendron giganteum HOM05D005269 ORTHO05D006429 3.3e-14 82.0 146 37.0
Zm00001eb318480 Zea mays HOM05D005269 ORTHO05D006429 5.7e-14 81.3 130 36.2
Phvul.006G123900 Phaseolus vulgaris HOM05D005269 ORTHO05D006429 1.3e-13 80.1 89 44.9
SEGI_08095 Sequoiadendron giganteum HOM05D005269 ORTHO05D006429 2.4e-12 75.9 125 36.0
SEGI_01057 Sequoiadendron giganteum HOM05D005269 ORTHO05D006429 5.3e-12 74.7 80 42.5
SMO134G0019 Selaginella moellendorffii HOM05D001491 ORTHO05D001443 2.6e-11 72.4 108 35.2
Medtr4g094458 Medicago truncatula HOM05D005269 ORTHO05D006429 3.4e-11 72.0 66 48.5
Os08g0163300 Oryza sativa ssp. japonica HOM05D005269 ORTHO05D006429 3.4e-11 72.0 154 35.1
Medtr1g105865 Medicago truncatula HOM05D005269 ORTHO05D006429 4.5e-11 71.6 95 43.2
PRCOL_00003345 Prasinoderma coloniale HOM05D005269 ORTHO05D006429 1.0e-10 70.5 116 37.1
AUR62032913 Chenopodium quinoa HOM05D005269 ORTHO05D006429 1.7e-10 69.7 55 58.2
Os09g0520100 Oryza sativa ssp. japonica HOM05D005269 ORTHO05D006429 3.8e-10 68.6 130 33.8
Zm00001eb415390 Zea mays HOM05D005269 ORTHO05D006429 5.5e-09 64.7 62 48.4
Medtr5g006580 Medicago truncatula HOM05D004187 ORTHO05D004890 1.2e-08 63.5 49 51.0
MCO11G533 Micromonas commoda HOM05D005269 ORTHO05D006429 1.2e-08 63.5 100 40.0
Mapoly0080s0095 Marchantia polymorpha HOM05D005269 ORTHO05D006429 1.6e-08 63.2 59 49.2
CDE02G2358 Ceratophyllum demersum HOM05D005269 ORTHO05D006429 2.7e-08 62.4 45 62.2
Phvul.006G123800 Phaseolus vulgaris HOM05D005269 ORTHO05D006429 3.0e-07 58.9 78 48.7
Nitab4.5_0002284g0060 Nicotiana tabacum HOM05D005269 ORTHO05D006429 5.7e-06 54.7 117 35.0
Cre06.g292950 Chlamydomonas reinhardtii HOM05D005269 ORTHO05D006429 9.7e-06 53.9 124 31.5


User provided reference genes

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