Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0034024 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 4.4e-95 351.3 177 100.0
CSS0049337 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 2.4e-93 345.5 181 97.8
CSS0002866 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 1.7e-83 312.8 167 95.2
CSS0009826 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 4.7e-81 304.7 165 94.5
Actinidia27771 Actinidia chinensis HOM05D005184 ORTHO05D006222 1.3e-67 260.0 183 74.3
Cpa.g.sc5.359 Carica papaya HOM05D005184 ORTHO05D006222 4.3e-66 255.0 176 75.6
CANSAT01G1514 Cannabis sativa HOM05D005184 ORTHO05D006222 8.0e-65 250.8 173 74.6
HanXRQChr04g0103681 Helianthus annuus HOM05D005184 ORTHO05D006222 8.0e-65 250.8 171 73.7
Lsat_1_v5_gn_4_6340 Lactuca sativa HOM05D005184 ORTHO05D006222 4.0e-64 248.4 179 71.5
Nn4g22873 Nelumbo nucifera HOM05D005184 ORTHO05D006222 5.2e-64 248.1 173 71.7
Manes.01G197300 Manihot esculenta HOM05D005184 ORTHO05D006222 8.9e-64 247.3 177 71.2
Migut.E00145 Erythranthe guttata HOM05D005184 ORTHO05D006222 1.2e-63 246.9 168 71.4
MSTRG.614 Avicennia marina HOM05D005184 ORTHO05D006222 1.5e-63 246.5 175 71.4
Oeu039485.1 Olea europaea HOM05D005184 ORTHO05D006222 1.5e-63 246.5 176 70.5
Cc11_g14330 Coffea canephora HOM05D005184 ORTHO05D006222 2.6e-63 245.7 182 69.8
Cfa009129 Carpinus fangiana HOM05D005184 ORTHO05D006222 3.4e-63 245.4 169 75.1
CsaV3_5G031800 Cucumis sativus L. HOM05D005184 ORTHO05D006222 4.4e-63 245.0 166 73.5
Rhsim12G0048500 Rhododendron simsii HOM05D005184 ORTHO05D006222 4.4e-63 245.0 204 65.2
CiPaw.05G149300 Carya illinoinensis HOM05D005184 ORTHO05D006222 3.7e-62 241.9 169 72.2
COL.COLO4_19542 Corchorus olitorius HOM05D005184 ORTHO05D006222 1.4e-61 240.0 174 71.8
ECA234G0428 Erigeron canadensis HOM05D005184 ORTHO05D003386 1.4e-61 240.0 168 71.4
Phvul.003G054400 Phaseolus vulgaris HOM05D005184 ORTHO05D006222 3.2e-61 238.8 168 72.0
Potri.008G146200 Populus trichocarpa HOM05D005184 ORTHO05D006222 5.4e-61 238.0 177 69.5
VMungo0251G1371 Vigna mungo HOM05D005184 ORTHO05D006222 7.1e-61 237.7 170 71.2
Oeu040755.2 Olea europaea HOM05D005184 ORTHO05D006222 1.2e-60 236.9 168 70.2
Atru.chr11.1971 Acer truncatum HOM05D005184 ORTHO05D006222 1.6e-60 236.5 169 71.0
Gohir.D01G129700 Gossypium hirsutum HOM05D005184 ORTHO05D006222 2.7e-60 235.7 174 70.7
TAR374G1061 Trochodendron aralioides HOM05D005184 ORTHO05D006222 2.7e-60 235.7 173 68.2
Potri.010G095601 Populus trichocarpa HOM05D005184 ORTHO05D006222 3.5e-60 235.3 177 68.9
Thecc.02G243600 Theobroma cacao HOM05D005184 ORTHO05D006222 3.5e-60 235.3 174 70.7
Ca_22770_v3 Cicer arietinum L. HOM05D005184 ORTHO05D006222 4.6e-60 235.0 169 70.4
Duzib268G0446 Durio zibethinus HOM05D005184 ORTHO05D006222 6.0e-60 234.6 174 70.7
Gohir.A01G139200 Gossypium hirsutum HOM05D005184 ORTHO05D006222 1.0e-59 233.8 174 70.1
Sabra10G0068200 Salix brachista HOM05D005184 ORTHO05D006222 1.0e-59 233.8 177 66.1
FvH4_4g34930 Fragaria vesca HOM05D005184 ORTHO05D006222 1.3e-59 233.4 172 67.4
ClCG05G025100 Citrullus lanatus HOM05D005184 ORTHO05D006222 1.7e-59 233.0 158 74.1
arahy.Tifrunner.gnm1.ann1.GIV1JF Arachis hypogaea HOM05D005184 ORTHO05D006222 2.3e-59 232.6 175 68.0
MD16G1088100 Malus domestica HOM05D005184 ORTHO05D006222 2.3e-59 232.6 170 68.2
Ciclev10032867m.g Citrus clementina HOM05D005184 ORTHO05D006222 3.0e-59 232.3 173 68.8
Glyma.18G133800 Glycine max HOM05D005184 ORTHO05D006222 3.9e-59 231.9 170 68.8
Glyma.08G290400 Glycine max HOM05D005184 ORTHO05D006222 6.6e-59 231.1 174 67.2
RcHm_v2.0_Chr5g0030111 Rosa chinensis HOM05D005184 ORTHO05D006222 6.6e-59 231.1 168 69.0
Medtr8g063230 Medicago truncatula HOM05D005184 ORTHO05D006222 8.6e-59 230.7 170 67.6
Sc04g0008930 Simmondsia chinensis HOM05D005184 ORTHO05D006222 8.6e-59 230.7 179 68.2
PGR119G0379 Punica granatum HOM05D005184 ORTHO05D006222 1.1e-58 230.3 175 66.3
Lj4g0016473 Lotus japonicus HOM05D005184 ORTHO05D006222 1.9e-58 229.6 169 69.2
TWI18G1303 Tripterygium wilfordii HOM05D005184 ORTHO05D006222 4.3e-58 228.4 181 66.3
CSS0033197 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 5.6e-58 228.0 180 65.6
Lalb_Chr11g0071121 Lupinus albus HOM05D005184 ORTHO05D006222 9.5e-58 227.3 165 69.1
TPR.G32980 Trifolium pratense HOM05D005184 ORTHO05D006222 1.6e-57 226.5 173 66.5
Haze_12160 Corylus avellana HOM05D005184 ORTHO05D006222 2.8e-57 225.7 166 70.5
PSO478G1620 Papaver somniferum HOM05D005184 ORTHO05D006222 2.8e-57 225.7 169 66.9
Zm00001eb254250 Zea mays HOM05D005184 ORTHO05D006222 4.7e-57 224.9 171 62.6
Os02g0741900 Oryza sativa ssp. japonica HOM05D005184 ORTHO05D006222 8.1e-57 224.2 170 61.2
Zm00001eb194690 Zea mays HOM05D005184 ORTHO05D006222 1.1e-56 223.8 171 62.0
MD13G1087800 Malus domestica HOM05D005184 ORTHO05D006222 1.4e-56 223.4 176 64.2
MELO3C012019.2 Cucumis melo HOM05D005184 ORTHO05D006222 3.1e-56 222.2 156 72.4
PSO017G3562 Papaver somniferum HOM05D005184 ORTHO05D006222 5.2e-56 221.5 169 65.7
Aqoxy3G03072 Aquilegia oxysepala HOM05D005184 ORTHO05D006222 8.9e-56 220.7 173 64.7
Medtr8g461280 Medicago truncatula HOM05D005184 ORTHO05D006222 8.9e-56 220.7 163 66.3
Gorai.002G161300 Gossypium raimondii HOM05D005184 ORTHO05D006222 5.8e-55 218.0 209 58.9
Eucgr.B02549 Eucalyptus grandis HOM05D005184 ORTHO05D006222 7.6e-55 217.6 165 64.8
Psat4g125480 Pisum sativum HOM05D005184 ORTHO05D006222 2.9e-54 215.7 170 65.3
Mapoly0065s0085 Marchantia polymorpha HOM05D005184 ORTHO05D006222 4.9e-54 214.9 169 63.3
FAN17G0007 Fragaria x ananassa HOM05D005184 ORTHO05D006222 8.3e-54 214.2 168 64.3
FAN12G2936 Fragaria x ananassa HOM05D005184 ORTHO05D006222 4.1e-53 211.8 168 63.1
CDE04G2481 Ceratophyllum demersum HOM05D006272 ORTHO05D006222 5.4e-53 211.5 191 59.7
FAN22G1244 Fragaria x ananassa HOM05D005184 ORTHO05D006222 9.2e-53 210.7 168 63.7
FAN07G0314 Fragaria x ananassa HOM05D005184 ORTHO05D006222 3.5e-52 208.8 168 62.5
arahy.Tifrunner.gnm1.ann1.G4BVC6 Arachis hypogaea HOM05D005184 ORTHO05D006222 6.0e-52 208.0 234 51.3
TAR622G1169 Trochodendron aralioides HOM05D005184 ORTHO05D006222 1.7e-51 206.5 163 66.3
unitig_749.g13268 Utricularia gibba HOM05D005184 ORTHO05D006222 8.6e-51 204.1 187 58.3
GSVIVG01020163001 Vitis vinifera HOM05D005184 ORTHO05D006222 1.1e-50 203.8 127 78.0
CDE06G1803 Ceratophyllum demersum HOM05D005184 ORTHO05D006222 2.1e-49 199.5 170 62.9
Lj3A1049G57 Lonicera japonica HOM05D005184 ORTHO05D006222 3.1e-48 195.7 126 77.0
SGA_v2.0_scaffold166G38348 Striga asiatica HOM05D005184 ORTHO05D006222 4.0e-48 195.3 129 73.6
HPP92_015265 Vanilla planifolia HOM05D000076 ORTHO05D002949 8.9e-48 194.1 167 58.7
DCAR_007099 Daucus carota HOM05D005184 ORTHO05D006222 9.9e-47 190.7 186 59.7
CBR_g30806 Chara braunii HOM05D005184 ORTHO05D006222 2.9e-46 189.1 169 56.8
CBR_g30798 Chara braunii HOM05D005184 ORTHO05D006222 4.9e-46 188.3 169 56.8
Pp3c1_7410 Physcomitrium patens HOM05D005184 ORTHO05D006222 8.4e-46 187.6 174 55.2
AUR62005318 Chenopodium quinoa HOM05D005184 ORTHO05D006222 3.2e-45 185.7 135 71.9
RcHm_v2.0_Chr3g0467191 Rosa chinensis HOM05D005184 ORTHO05D006222 4.2e-45 185.3 169 59.2
THA.LOC104808902 Tarenaya hassleriana HOM05D005184 ORTHO05D006222 7.8e-44 181.0 168 53.0
THA.LOC104822060 Tarenaya hassleriana HOM05D005184 ORTHO05D006222 7.8e-44 181.0 172 54.1
ATR1149G050 Amborella trichopoda HOM05D005184 ORTHO05D006222 1.0e-43 180.6 127 68.5
Carub.0001s2347 Capsella rubella HOM05D005184 ORTHO05D006222 1.7e-43 179.9 172 52.9
AT1G24050 Arabidopsis thaliana HOM05D005184 ORTHO05D006222 3.0e-43 179.1 168 53.0
AL1G37810 Arabidopsis lyrata HOM05D005184 ORTHO05D006222 3.9e-43 178.7 168 53.0
Hund05960 Selenicereus undatus HOM05D005184 ORTHO05D006222 5.1e-43 178.3 117 76.1
RcHm_v2.0_Chr1g0347741 Rosa chinensis HOM05D005184 ORTHO05D006222 2.5e-42 176.0 147 63.3
AagrBONN_evm.TU.Sc2ySwM_344.3206 Anthoceros agrestis HOM05D005184 ORTHO05D006222 4.3e-42 175.3 157 58.0
Thhalv10009785m.g Eutrema salsugineum HOM05D005184 ORTHO05D006222 7.3e-42 174.5 163 52.1
SMO117G0191 Selaginella moellendorffii HOM05D005184 ORTHO05D006222 3.6e-41 172.2 171 52.0
Aa31LG7G7840 Aethionema arabicum HOM05D005184 ORTHO05D006222 4.8e-41 171.8 168 51.8
Nitab4.5_0000031g0060 Nicotiana tabacum HOM05D005184 ORTHO05D006222 6.2e-41 171.4 186 53.2
BcaB07g32379 Brassica carinata HOM05D005184 ORTHO05D006222 5.3e-40 168.3 164 52.4
Sp1g21380 Schrenkiella parvula HOM05D005184 ORTHO05D006222 9.0e-40 167.5 168 51.2
RcHm_v2.0_Chr4g0444381 Rosa chinensis HOM05D005184 ORTHO05D006222 2.6e-39 166.0 105 76.2
BcaC05g26302 Brassica carinata HOM05D005184 ORTHO05D006222 3.4e-39 165.6 171 49.7
C07p20080 Brassica napus HOM05D005184 ORTHO05D006222 9.9e-39 164.1 166 50.0
BolC7t42528H Brassica oleracea HOM05D005184 ORTHO05D006222 9.9e-39 164.1 166 50.0
RcHm_v2.0_Chr2g0143691 Rosa chinensis HOM05D005184 ORTHO05D006222 3.8e-38 162.2 140 61.4
BraA07t29118Z Brassica rapa HOM05D005184 ORTHO05D006222 6.4e-38 161.4 166 48.8
BolC5t31020H Brassica oleracea HOM05D005184 ORTHO05D006222 8.4e-38 161.0 172 49.4
BraA09t39575Z Brassica rapa HOM05D005184 ORTHO05D006222 1.4e-37 160.2 172 49.4
CSS0000441 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 1.2e-36 157.1 121 66.1
C05p23190 Brassica napus HOM05D001690 ORTHO05D009096 1.6e-36 156.8 165 50.9
A09p40800 Brassica napus HOM05D001690 ORTHO05D009096 1.3e-35 153.7 165 49.7
Sed0020204 Sechium edule HOM05D005184 ORTHO05D006222 8.7e-35 151.0 120 70.0
RcHm_v2.0_Chr7g0224821 Rosa chinensis HOM05D005184 ORTHO05D006222 1.1e-34 150.6 124 65.3
Duzib248G0500 Durio zibethinus HOM05D005184 ORTHO05D006222 5.6e-34 148.3 128 62.5
Pp3c7_23840 Physcomitrium patens HOM05D005184 ORTHO05D006222 2.1e-33 146.4 129 57.4
EL10Ac6g13619 Beta vulgaris HOM05D005184 ORTHO05D006222 3.6e-33 145.6 153 54.2
Phvul.003G054101 Phaseolus vulgaris HOM05D005184 ORTHO05D006222 3.6e-33 145.6 123 61.8
Thhalv10019170m.g Eutrema salsugineum HOM05D005184 ORTHO05D006222 3.1e-32 142.5 187 41.7
BcaC03g15168 Brassica carinata HOM05D005184 ORTHO05D006222 5.8e-31 138.3 168 43.5
BraA02t06699Z Brassica rapa HOM05D005184 ORTHO05D006222 7.6e-31 137.9 166 43.4
C02p27410 Brassica napus HOM05D005184 ORTHO05D006222 9.9e-31 137.5 168 43.5
BolC2t08801H Brassica oleracea HOM05D005184 ORTHO05D006222 9.9e-31 137.5 168 43.5
CARHR024350 Cardamine hirsuta HOM05D005184 ORTHO05D006222 1.7e-30 136.7 137 51.1
Sp5g25350 Schrenkiella parvula HOM05D005184 ORTHO05D006222 2.4e-29 132.9 172 41.3
A02p16400 Brassica napus HOM05D005184 ORTHO05D006222 9.3e-29 131.0 188 39.4
BcaB03g14122 Brassica carinata HOM05D005184 ORTHO05D006222 1.2e-28 130.6 117 54.7
Prupe.1G258500 Prunus persica HOM05D005184 ORTHO05D006222 3.5e-28 129.0 121 57.9
Carub.0002s1692 Capsella rubella HOM05D005184 ORTHO05D006222 1.0e-27 127.5 168 41.7
Cc02_g24860 Coffea canephora HOM05D005184 ORTHO05D006222 6.7e-27 124.8 118 57.6
AL2G29520 Arabidopsis lyrata HOM05D005184 ORTHO05D006222 1.5e-26 123.6 167 40.7
vmacro22616 Vaccinium macrocarpon HOM05D005184 ORTHO05D006222 4.8e-25 118.6 79 78.5
BcaC06g35075 Brassica carinata HOM05D005184 ORTHO05D006222 8.1e-25 117.9 137 47.4
CARHR063340 Cardamine hirsuta HOM05D005184 ORTHO05D006222 1.4e-24 117.1 169 39.6
AT1G70220 Arabidopsis thaliana HOM05D005184 ORTHO05D006222 9.0e-24 114.4 172 39.0
BcaB05g24540 Brassica carinata HOM05D005184 ORTHO05D006222 7.1e-21 104.8 127 44.1
Cre10.g421850 Chlamydomonas reinhardtii HOM05D005184 ORTHO05D006222 9.3e-21 104.4 165 35.8
Cc00_g31660 Coffea canephora HOM05D005184 ORTHO05D006222 9.3e-21 104.4 132 49.2
A07p13470 Brassica napus HOM05D005184 ORTHO05D006222 7.9e-20 101.3 159 37.1
QL03p062286 Quercus lobata HOM05D005184 ORTHO05D006222 2.1e-17 93.2 63 69.8
vmacro22617 Vaccinium macrocarpon HOM05D005184 ORTHO05D006222 2.4e-16 89.7 57 75.4
MCO16G256 Micromonas commoda HOM05D005184 ORTHO05D006222 1.2e-15 87.4 171 31.6
BcaB02g09680 Brassica carinata HOM05D000630 ORTHO05D014858 1.5e-15 87.0 79 53.2
Nitab4.5_0000925g0110 Nicotiana tabacum HOM05D005184 ORTHO05D006222 1.5e-15 87.0 49 79.6
Solyc04g025670.4 Solanum lycopersicum HOM05D005184 ORTHO05D006222 1.5e-15 87.0 49 77.6
Prupe.1G258600 Prunus persica HOM05D005184 ORTHO05D006222 1.7e-14 83.6 57 70.2
Cc00_g05590 Coffea canephora HOM05D005184 ORTHO05D006222 8.4e-14 81.3 89 50.6
CSS0046251 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 2.5e-13 79.7 55 69.1
PRCOL_00005775 Prasinoderma coloniale HOM05D005184 ORTHO05D006222 3.0e-11 72.8 94 44.7
Peaxi162Scf00792g00021 Petunia axillaris HOM05D005184 ORTHO05D006222 6.7e-11 71.6 41 75.6
Cc00_g11840 Coffea canephora HOM05D001087 ORTHO05D006222 7.4e-10 68.2 78 50.0
BolC5t28869H Brassica oleracea HOM05D000630 ORTHO05D014858 1.7e-06 57.0 62 41.9
RcHm_v2.0_Chr4g0444371 Rosa chinensis HOM05D005184 ORTHO05D006222 3.8e-06 55.8 39 59.0


User provided reference genes

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