Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0034019 Camellia sinensis var. sinensis HOM05D000742 ORTHO05D000924 5.1e-72 274.2 133 100.0
CSS0046688 Camellia sinensis var. sinensis HOM05D000742 ORTHO05D000924 3.8e-67 258.1 133 93.2
CSS0016877 Camellia sinensis var. sinensis HOM05D000742 ORTHO05D000924 2.5e-66 255.4 134 94.0
CSS0008450 Camellia sinensis var. sinensis HOM05D000742 ORTHO05D000924 1.2e-65 253.1 133 92.5
CSS0023083 Camellia sinensis var. sinensis HOM05D000742 ORTHO05D000924 1.0e-24 117.1 104 58.7
vmacro08575 Vaccinium macrocarpon HOM05D000742 ORTHO05D000924 4.8e-22 108.2 108 51.9
Dinv01892 Davidia involucrata HOM05D000742 ORTHO05D000924 1.8e-21 106.3 108 50.9
Actinidia38431 Actinidia chinensis HOM05D000742 ORTHO05D000924 1.6e-20 103.2 106 50.9
Hma1.2p1_1538F.1_g289580 Hydrangea macrophylla HOM05D000742 ORTHO05D000924 5.9e-20 101.3 104 49.0
GSVIVG01011624001 Vitis vinifera HOM05D000742 ORTHO05D000924 3.8e-19 98.6 108 48.1
Haze_10845 Corylus avellana HOM05D000742 ORTHO05D000924 1.1e-18 97.1 106 49.1
QL03p038232 Quercus lobata HOM05D000742 ORTHO05D000924 1.2e-17 93.6 110 48.2
ATR0021G009 Amborella trichopoda HOM05D000742 ORTHO05D000924 3.6e-17 92.0 107 44.9
Gohir.A05G308000 Gossypium hirsutum HOM05D000742 ORTHO05D000924 4.7e-17 91.7 110 44.5
Gohir.D05G308300 Gossypium hirsutum HOM05D000742 ORTHO05D000924 4.7e-17 91.7 110 44.5
Gorai.009G328600 Gossypium raimondii HOM05D000742 ORTHO05D000924 4.7e-17 91.7 110 44.5
Thecc.02G307400 Theobroma cacao HOM05D000742 ORTHO05D000924 4.7e-17 91.7 65 64.6
CANSAT78G2418 Cannabis sativa HOM05D000742 ORTHO05D000924 1.4e-16 90.1 104 44.2
Medtr8g105910 Medicago truncatula HOM05D000742 ORTHO05D000924 1.4e-16 90.1 108 41.7
Nn3g18426 Nelumbo nucifera HOM05D000742 ORTHO05D000924 1.4e-16 90.1 108 45.4
Ca_17249_v3 Cicer arietinum L. HOM05D000742 ORTHO05D000924 1.8e-16 89.7 107 43.0
COL.COLO4_27609 Corchorus olitorius HOM05D000742 ORTHO05D000924 6.8e-16 87.8 65 63.1
Atru.chr11.818 Acer truncatum HOM05D000742 ORTHO05D000924 2.6e-15 85.9 91 50.5
arahy.Tifrunner.gnm1.ann1.0KE6L8 Arachis hypogaea HOM05D000742 ORTHO05D000924 2.6e-15 85.9 110 46.4
CiPaw.05G187700 Carya illinoinensis HOM05D000742 ORTHO05D000924 2.6e-15 85.9 65 63.1
Psat4g004520 Pisum sativum HOM05D000742 ORTHO05D000924 2.6e-15 85.9 113 41.6
Migut.E00495 Erythranthe guttata HOM05D000742 ORTHO05D000924 5.7e-15 84.7 100 43.0
Lalb_Chr16g0387421 Lupinus albus HOM05D000742 ORTHO05D000924 5.7e-15 84.7 61 62.3
TPR.G6493 Trifolium pratense HOM05D000742 ORTHO05D000924 5.7e-15 84.7 108 40.7
Medtr1g032860 Medicago truncatula HOM05D000742 ORTHO05D000924 7.5e-15 84.3 104 42.3
Glyma.07G172700 Glycine max HOM05D000742 ORTHO05D000924 9.8e-15 84.0 104 42.3
Lj2g0018340 Lotus japonicus HOM05D000742 ORTHO05D000924 2.2e-14 82.8 108 41.7
TAR371G0249 Trochodendron aralioides HOM05D000742 ORTHO05D000924 2.2e-14 82.8 108 43.5
Sabra10G0076200 Salix brachista HOM05D000742 ORTHO05D000924 2.8e-14 82.4 77 58.4
arahy.Tifrunner.gnm1.ann1.A7PU6D Arachis hypogaea HOM05D000742 ORTHO05D000924 3.7e-14 82.0 110 45.5
TPR.G14280 Trifolium pratense HOM05D000742 ORTHO05D000924 3.7e-14 82.0 104 40.4
Ca_13004_v3 Cicer arietinum L. HOM05D000742 ORTHO05D000924 4.9e-14 81.6 108 39.8
Ca_13002_v3 Cicer arietinum L. HOM05D000742 ORTHO05D000924 6.3e-14 81.3 104 41.3
Psat6g051120 Pisum sativum HOM05D000742 ORTHO05D000924 8.3e-14 80.9 104 41.3
Gorai.008G170600 Gossypium raimondii HOM05D000742 ORTHO05D000924 1.1e-13 80.5 65 58.5
Lalb_Chr17g0338401 Lupinus albus HOM05D000742 ORTHO05D000924 1.1e-13 80.5 104 41.3
Cc11_g06570 Coffea canephora HOM05D000742 ORTHO05D000924 1.8e-13 79.7 69 56.5
Gohir.D12G157800 Gossypium hirsutum HOM05D000742 ORTHO05D000924 1.8e-13 79.7 65 58.5
VMungo1215G2472 Vigna mungo HOM05D000742 ORTHO05D000924 3.2e-13 79.0 110 41.8
Phvul.003G016000 Phaseolus vulgaris HOM05D000742 ORTHO05D000924 7.0e-13 77.8 104 39.4
Prupe.1G335700 Prunus persica HOM05D000742 ORTHO05D000924 7.0e-13 77.8 111 42.3
Ciclev10015346m.g Citrus clementina HOM05D000742 ORTHO05D000924 2.0e-12 76.3 78 43.6
SHI04345 Sapria himalayana HOM05D000742 ORTHO05D000924 2.3e-11 72.8 69 53.6
SalBow2G1857 Salvia bowleyana HOM05D000742 ORTHO05D000924 2.9e-11 72.4 104 37.5
Potri.010G103600 Populus trichocarpa HOM05D000742 ORTHO05D000924 6.6e-11 71.2 61 59.0
Eucgr.G02082 Eucalyptus grandis HOM05D000742 ORTHO05D000924 1.5e-10 70.1 62 50.0
Os11g0549537 Oryza sativa ssp. japonica HOM05D000742 ORTHO05D000924 1.9e-10 69.7 71 46.5
Lj4g0001118 Lotus japonicus HOM05D000742 ORTHO05D000924 1.2e-09 67.0 78 44.9
CSS0042127 Camellia sinensis var. sinensis HOM05D000742 ORTHO05D000924 2.8e-09 65.9 78 46.2
FAN12G2312 Fragaria x ananassa HOM05D000742 ORTHO05D000924 2.8e-09 65.9 80 45.0
FAN17G2951 Fragaria x ananassa HOM05D000742 ORTHO05D000924 2.8e-09 65.9 80 45.0
TWI74G0296 Tripterygium wilfordii HOM05D000742 ORTHO05D000924 2.8e-09 65.9 64 45.3
HanXRQChr17g0566011 Helianthus annuus HOM05D000742 ORTHO05D000924 3.6e-09 65.5 88 39.8
Zm00001eb201610 Zea mays HOM05D000742 ORTHO05D000924 3.6e-09 65.5 48 54.2
Aqoxy3G04060 Aquilegia oxysepala HOM05D000742 ORTHO05D000924 4.7e-09 65.1 109 36.7
FvH4_4g33260 Fragaria vesca HOM05D000742 ORTHO05D000924 4.7e-09 65.1 79 44.3
Nn4g24464 Nelumbo nucifera HOM05D000742 ORTHO05D000924 4.7e-09 65.1 78 47.4
MD13G1017900 Malus domestica HOM05D000742 ORTHO05D000924 1.4e-08 63.5 99 41.4
FAN22G1641 Fragaria x ananassa HOM05D000742 ORTHO05D000924 3.1e-08 62.4 76 44.7
COL.COLO4_16965 Corchorus olitorius HOM05D000742 ORTHO05D000924 4.0e-08 62.0 38 76.3
BcaC08g46222 Brassica carinata HOM05D000742 ORTHO05D000924 5.2e-08 61.6 70 44.3
C06p42030 Brassica napus HOM05D003836 ORTHO05D004556 5.2e-08 61.6 70 44.3
HanXRQChr16g0527261 Helianthus annuus HOM05D000742 ORTHO05D000924 6.8e-08 61.2 69 46.4
Duzib205G0173 Durio zibethinus HOM05D000742 ORTHO05D000924 8.9e-08 60.8 38 71.1
THA.LOC104825573 Tarenaya hassleriana HOM05D000742 ORTHO05D000924 8.9e-08 60.8 40 70.0
Cpa.g.sc90.13 Carica papaya HOM05D000742 ORTHO05D000924 1.2e-07 60.5 37 73.0
PSO063G7077 Papaver somniferum HOM05D000742 ORTHO05D000924 1.2e-07 60.5 34 85.3
PSO782G0093 Papaver somniferum HOM05D000742 ORTHO05D000924 1.2e-07 60.5 34 85.3
Sabra01G0107200 Salix brachista HOM05D000742 ORTHO05D000924 1.5e-07 60.1 38 73.7
Eucgr.A02974 Eucalyptus grandis HOM05D000742 ORTHO05D000924 2.0e-07 59.7 39 74.4
Sed0003399 Sechium edule HOM05D000742 ORTHO05D000924 2.0e-07 59.7 35 82.9
BcaB03g15146 Brassica carinata HOM05D000742 ORTHO05D000924 2.6e-07 59.3 71 47.9
BcaC08g46217 Brassica carinata HOM05D000742 ORTHO05D000924 2.6e-07 59.3 71 47.9
FAN08G0298 Fragaria x ananassa HOM05D000742 ORTHO05D000924 2.6e-07 59.3 44 65.9
Gorai.003G184200 Gossypium raimondii HOM05D000742 ORTHO05D000924 2.6e-07 59.3 38 68.4
MD16G1015900 Malus domestica HOM05D000742 ORTHO05D000924 2.6e-07 59.3 75 48.0
Sed0001432 Sechium edule HOM05D000742 ORTHO05D000924 2.6e-07 59.3 35 82.9
A07p34480 Brassica napus HOM05D003836 ORTHO05D004556 3.4e-07 58.9 70 44.3
Carub.0002s1444 Capsella rubella HOM05D000742 ORTHO05D000924 3.4e-07 58.9 37 73.0
Dinv28988 Davidia involucrata HOM05D000742 ORTHO05D000924 3.4e-07 58.9 34 79.4
Sp5g22970 Schrenkiella parvula HOM05D000742 ORTHO05D000924 3.4e-07 58.9 57 52.6
TAR636G2913 Trochodendron aralioides HOM05D000742 ORTHO05D000924 3.4e-07 58.9 34 79.4
AT1G67950 Arabidopsis thaliana HOM05D000742 ORTHO05D000924 4.4e-07 58.5 37 70.3
Glyma.02G086600 Glycine max HOM05D000742 ORTHO05D000924 4.4e-07 58.5 78 42.3
Solyc08g076530.3 Solanum lycopersicum HOM05D000742 ORTHO05D000924 4.4e-07 58.5 34 79.4
Sopen08g025110 Solanum pennellii HOM05D000742 ORTHO05D000924 4.4e-07 58.5 34 79.4
PGSC0003DMG400014809 Solanum tuberosum HOM05D000742 ORTHO05D000924 4.4e-07 58.5 34 79.4
ATR0829G069 Amborella trichopoda HOM05D000742 ORTHO05D000924 5.8e-07 58.2 78 39.7
Aqoxy3G02213 Aquilegia oxysepala HOM05D000742 ORTHO05D000924 5.8e-07 58.2 42 64.3
BolC6t39224H Brassica oleracea HOM05D000742 ORTHO05D000924 5.8e-07 58.2 68 44.1
Manes.17G010500 Manihot esculenta HOM05D000742 ORTHO05D000924 5.8e-07 58.2 35 71.4
Sed0012917 Sechium edule HOM05D000742 ORTHO05D000924 5.8e-07 58.2 34 76.5
TWI15G1141 Tripterygium wilfordii HOM05D000742 ORTHO05D000924 5.8e-07 58.2 34 76.5
ClCG07G005450 Citrullus lanatus HOM05D000742 ORTHO05D000924 7.5e-07 57.8 35 80.0
CsaV3_5G014500 Cucumis sativus L. HOM05D000742 ORTHO05D000924 7.5e-07 57.8 37 75.7
Duzib084G0106 Durio zibethinus HOM05D000742 ORTHO05D000924 7.5e-07 57.8 37 67.6
Lj5g0000224 Lotus japonicus HOM05D000742 ORTHO05D000924 7.5e-07 57.8 34 73.5
Atru.chr6.1630 Acer truncatum HOM05D000742 ORTHO05D000924 9.8e-07 57.4 78 39.7
Dinv29150 Davidia involucrata HOM05D000329 ORTHO05D002813 9.8e-07 57.4 33 81.8
Nitab4.5_0000021g0620 Nicotiana tabacum HOM05D000742 ORTHO05D000924 9.8e-07 57.4 33 81.8
CARHR060580 Cardamine hirsuta HOM05D000742 ORTHO05D000924 1.3e-06 57.0 79 40.5
ClCG10G001390 Citrullus lanatus HOM05D000742 ORTHO05D000924 1.3e-06 57.0 34 73.5
Cc08_g03430 Coffea canephora HOM05D000742 ORTHO05D000924 1.3e-06 57.0 34 73.5
Glyma.09G206900 Glycine max HOM05D000742 ORTHO05D000924 1.3e-06 57.0 34 73.5
Gorai.008G224700 Gossypium raimondii HOM05D000742 ORTHO05D000924 1.3e-06 57.0 40 60.0
Nn3g19410 Nelumbo nucifera HOM05D000742 ORTHO05D000924 1.3e-06 57.0 34 79.4
Psat4g122600 Pisum sativum HOM05D000742 ORTHO05D000924 1.3e-06 57.0 34 73.5
Thecc.03G307700 Theobroma cacao HOM05D000742 ORTHO05D000924 1.3e-06 57.0 37 64.9
TWI60G0527 Tripterygium wilfordii HOM05D000742 ORTHO05D000924 1.3e-06 57.0 34 73.5
MSTRG.1997 Avicennia marina HOM05D000742 ORTHO05D000924 1.7e-06 56.6 34 73.5
Thhalv10018968m.g Eutrema salsugineum HOM05D000742 ORTHO05D000924 1.7e-06 56.6 60 48.3
Lj1C1033T24 Lonicera japonica HOM05D000742 ORTHO05D000924 1.7e-06 56.6 37 73.0
Nitab4.5_0000529g0020 Nicotiana tabacum HOM05D000742 ORTHO05D000924 1.7e-06 56.6 34 79.4
QL12p001218 Quercus lobata HOM05D000742 ORTHO05D000924 1.7e-06 56.6 34 73.5
TAR375G0835 Trochodendron aralioides HOM05D000742 ORTHO05D000924 1.7e-06 56.6 34 73.5
AL2G26970 Arabidopsis lyrata HOM05D000742 ORTHO05D000924 2.2e-06 56.2 37 67.6
arahy.Tifrunner.gnm1.ann1.BGND9H Arachis hypogaea HOM05D000742 ORTHO05D000924 2.2e-06 56.2 37 64.9
arahy.Tifrunner.gnm1.ann1.YQJ5CI Arachis hypogaea HOM05D000742 ORTHO05D000924 2.2e-06 56.2 37 64.9
CiPaw.12G067100 Carya illinoinensis HOM05D000742 ORTHO05D000924 2.2e-06 56.2 77 40.3
Haze_08175 Corylus avellana HOM05D000742 ORTHO05D000924 2.2e-06 56.2 34 73.5
ECA232G2679 Erigeron canadensis HOM05D000742 ORTHO05D000924 2.2e-06 56.2 34 73.5
HanXRQChr16g0512511 Helianthus annuus HOM05D000742 ORTHO05D000924 2.2e-06 56.2 34 76.5
MD07G1309500 Malus domestica HOM05D000742 ORTHO05D000924 2.2e-06 56.2 35 68.6
PSO675G7805 Papaver somniferum HOM05D000742 ORTHO05D000924 2.2e-06 56.2 38 68.4
PSO717G0142 Papaver somniferum HOM05D000742 ORTHO05D000924 2.2e-06 56.2 38 68.4
Potri.001G138400 Populus trichocarpa HOM05D000742 ORTHO05D000924 2.2e-06 56.2 34 73.5
Solyc03g097110.4 Solanum lycopersicum HOM05D000742 ORTHO05D000924 2.2e-06 56.2 32 81.2
Sopen03g027850 Solanum pennellii HOM05D000742 ORTHO05D000924 2.2e-06 56.2 32 81.2
Dinv25245 Davidia involucrata HOM05D000742 ORTHO05D000924 2.9e-06 55.8 78 39.7
FAN01G2133 Fragaria x ananassa HOM05D000742 ORTHO05D000924 2.9e-06 55.8 47 48.9
Gohir.A03G000044 Gossypium hirsutum HOM05D000742 ORTHO05D000924 2.9e-06 55.8 38 65.8
Gohir.D12G209200 Gossypium hirsutum HOM05D000742 ORTHO05D000924 2.9e-06 55.8 37 64.9
Hma1.2p1_0572F.1_g181190 Hydrangea macrophylla HOM05D000742 ORTHO05D000924 2.9e-06 55.8 37 67.6
Hma1.2p1_1680F.1_g297110 Hydrangea macrophylla HOM05D000742 ORTHO05D000924 2.9e-06 55.8 33 78.8
Hma1.2p1_3278F.1_g334813 Hydrangea macrophylla HOM05D000742 ORTHO05D000924 2.9e-06 55.8 37 67.6
Potri.003G095400 Populus trichocarpa HOM05D000742 ORTHO05D000924 2.9e-06 55.8 34 73.5
RcHm_v2.0_Chr7g0211571 Rosa chinensis HOM05D000742 ORTHO05D000924 2.9e-06 55.8 34 76.5
PGSC0003DMG400003159 Solanum tuberosum HOM05D000742 ORTHO05D000924 2.9e-06 55.8 32 81.2
TWI81G0414 Tripterygium wilfordii HOM05D000742 ORTHO05D000924 2.9e-06 55.8 34 70.6
HPP92_022108 Vanilla planifolia HOM05D000742 ORTHO05D000924 2.9e-06 55.8 37 70.3
HPP92_022133 Vanilla planifolia HOM05D000742 ORTHO05D000924 2.9e-06 55.8 37 70.3
CDE06G2438 Ceratophyllum demersum HOM05D000742 ORTHO05D000924 3.7e-06 55.5 34 73.5
Ca_22659_v3 Cicer arietinum L. HOM05D000742 ORTHO05D000924 3.7e-06 55.5 34 73.5
Haze_00414 Corylus avellana HOM05D000742 ORTHO05D000924 3.7e-06 55.5 34 73.5
CsaV3_3G001470 Cucumis sativus L. HOM05D000742 ORTHO05D000924 3.7e-06 55.5 34 70.6
Glyma.01G015500 Glycine max HOM05D000742 ORTHO05D000924 3.7e-06 55.5 34 70.6
Lsat_1_v5_gn_3_68461 Lactuca sativa HOM05D000742 ORTHO05D000924 3.7e-06 55.5 34 73.5
Lsat_1_v5_gn_4_36960 Lactuca sativa HOM05D000742 ORTHO05D000924 3.7e-06 55.5 34 73.5
Lsat_1_v5_gn_5_106901 Lactuca sativa HOM05D000742 ORTHO05D000924 3.7e-06 55.5 34 73.5
Lsat_1_v5_gn_7_39100 Lactuca sativa HOM05D000742 ORTHO05D000924 3.7e-06 55.5 34 73.5
Lsat_1_v5_gn_9_47681 Lactuca sativa HOM05D000742 ORTHO05D000924 3.7e-06 55.5 34 73.5
Manes.09G125200 Manihot esculenta HOM05D000742 ORTHO05D000924 3.7e-06 55.5 33 75.8
Medtr8g066460 Medicago truncatula HOM05D000742 ORTHO05D000924 3.7e-06 55.5 34 70.6
TAR374G1002 Trochodendron aralioides HOM05D000742 ORTHO05D000924 3.7e-06 55.5 33 72.7
CSS0026657 Camellia sinensis var. sinensis HOM05D000742 ORTHO05D000924 4.9e-06 55.1 34 70.6
CANSAT21G2445 Cannabis sativa HOM05D000742 ORTHO05D000924 4.9e-06 55.1 33 72.7
Hma1.2p1_0572F.1_g181200 Hydrangea macrophylla HOM05D000742 ORTHO05D000924 4.9e-06 55.1 34 73.5
Lsat_1_v5_gn_4_23380 Lactuca sativa HOM05D000742 ORTHO05D000924 4.9e-06 55.1 53 50.9
MD01G1236900 Malus domestica HOM05D000742 ORTHO05D000924 4.9e-06 55.1 35 62.9
Nn1g01981 Nelumbo nucifera HOM05D000742 ORTHO05D000924 4.9e-06 55.1 34 67.6
Peaxi162Scf00170g00921 Petunia axillaris HOM05D000742 ORTHO05D000924 4.9e-06 55.1 34 76.5
Phvul.003G283600 Phaseolus vulgaris HOM05D000742 ORTHO05D000924 4.9e-06 55.1 43 60.5
PGR042G0913 Punica granatum HOM05D000742 ORTHO05D000924 4.9e-06 55.1 32 78.1
SGA_v2.0_scaffold20G09264 Striga asiatica HOM05D000742 ORTHO05D000924 4.9e-06 55.1 34 73.5
SGA_v2.0_scaffold6G03152 Striga asiatica HOM05D000742 ORTHO05D000924 4.9e-06 55.1 34 73.5
GSVIVG01024381001 Vitis vinifera HOM05D000742 ORTHO05D000924 4.9e-06 55.1 34 73.5
Actinidia34316 Actinidia chinensis HOM05D000742 ORTHO05D000924 6.4e-06 54.7 33 72.7
MSTRG.13746 Avicennia marina HOM05D000742 ORTHO05D000924 6.4e-06 54.7 34 70.6
CSS0025586 Camellia sinensis var. sinensis HOM05D000742 ORTHO05D000924 6.4e-06 54.7 41 61.0
Os03g0713600 Oryza sativa ssp. japonica HOM05D000742 ORTHO05D000924 6.4e-06 54.7 35 74.3
ECA246G1529 Erigeron canadensis HOM05D000742 ORTHO05D000924 8.3e-06 54.3 34 73.5
Lalb_Chr09g0325561 Lupinus albus HOM05D000742 ORTHO05D000924 8.3e-06 54.3 33 72.7
Prupe.5G029900 Prunus persica HOM05D000742 ORTHO05D000924 8.3e-06 54.3 33 75.8
Sabra03G0064300 Salix brachista HOM05D000742 ORTHO05D000924 8.3e-06 54.3 34 70.6
HPP92_024771 Vanilla planifolia HOM05D000742 ORTHO05D000924 8.3e-06 54.3 34 73.5


User provided reference genes

Program Settings