Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0034003 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 3.4e-300 1034.2 539 100.0
CSS0014725 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 1.3e-275 952.6 621 83.9
CSS0035317 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 1.0e-259 899.8 628 79.6
CSS0002990 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 2.0e-252 875.5 657 76.9
Actinidia20577 Actinidia chinensis HOM05D004142 ORTHO05D005411 5.6e-210 734.6 637 66.1
Dinv14174 Davidia involucrata HOM05D004142 ORTHO05D005411 6.2e-209 731.1 633 65.4
Actinidia17993 Actinidia chinensis HOM05D004142 ORTHO05D005411 4.9e-206 721.5 635 65.5
Rhsim11G0198100 Rhododendron simsii HOM05D004142 ORTHO05D005411 2.3e-203 712.6 619 64.9
Cfa005371 Carpinus fangiana HOM05D004142 ORTHO05D005411 3.0e-195 685.6 625 61.6
QL11p056391 Quercus lobata HOM05D004142 ORTHO05D005411 1.1e-186 657.1 631 61.3
Atru.chr3.3247 Acer truncatum HOM05D004142 ORTHO05D005411 6.2e-185 651.4 632 59.0
Ciclev10028022m.g Citrus clementina HOM05D004142 ORTHO05D005411 8.4e-182 641.0 639 58.4
Haze_02000 Corylus avellana HOM05D004142 ORTHO05D005411 7.9e-180 634.4 657 56.8
TAR633G0693 Trochodendron aralioides HOM05D004142 ORTHO05D005411 2.3e-179 632.9 636 58.5
Thecc.02G146100 Theobroma cacao HOM05D004142 ORTHO05D005411 5.1e-179 631.7 641 57.1
CiPaw.06G115400 Carya illinoinensis HOM05D004142 ORTHO05D005411 2.8e-177 625.9 626 58.0
TWI75G0433 Tripterygium wilfordii HOM05D004142 ORTHO05D005411 2.8e-177 625.9 633 57.8
Lj5C171T17 Lonicera japonica HOM05D004142 ORTHO05D005411 2.4e-176 622.9 688 54.8
Duzib052G0377 Durio zibethinus HOM05D004142 ORTHO05D005411 3.1e-176 622.5 639 57.0
Peaxi162Scf01986g00004 Petunia axillaris HOM05D004142 ORTHO05D005411 2.6e-175 619.4 616 59.1
Sopen10g027050 Solanum pennellii HOM05D004142 ORTHO05D005411 2.6e-175 619.4 628 57.6
Gohir.A13G065000 Gossypium hirsutum HOM05D004142 ORTHO05D005411 1.3e-174 617.1 638 56.4
Prupe.8G180000 Prunus persica HOM05D004142 ORTHO05D005411 5.5e-173 611.7 634 55.8
Manes.04G066800 Manihot esculenta HOM05D004142 ORTHO05D005411 1.6e-172 610.1 608 58.1
Eucgr.G01885 Eucalyptus grandis HOM05D004142 ORTHO05D005411 2.1e-172 609.8 629 57.1
Gohir.D13G057300 Gossypium hirsutum HOM05D004142 ORTHO05D005411 3.5e-172 609.0 638 56.0
Gorai.013G064000 Gossypium raimondii HOM05D004142 ORTHO05D005411 4.6e-172 608.6 638 56.0
Potri.009G168100 Populus trichocarpa HOM05D004142 ORTHO05D005411 1.3e-171 607.1 619 56.7
Solyc10g074560.2 Solanum lycopersicum HOM05D004142 ORTHO05D005411 1.3e-171 607.1 599 58.4
MD10G1141700 Malus domestica HOM05D004142 ORTHO05D005411 2.3e-171 606.3 630 56.5
CAN.G765.24 Capsicum annuum HOM05D004142 ORTHO05D005411 2.5e-170 602.8 626 56.5
PGR042G3440 Punica granatum HOM05D004142 ORTHO05D005411 3.3e-170 602.4 622 57.2
Medtr5g078780 Medicago truncatula HOM05D004142 ORTHO05D005411 9.7e-170 600.9 624 55.1
FAN24G0393 Fragaria x ananassa HOM05D004142 ORTHO05D005411 2.4e-168 596.3 635 55.1
Glyma.14G215500 Glycine max HOM05D004142 ORTHO05D005411 2.4e-168 596.3 595 56.3
CANSAT25G0210 Cannabis sativa HOM05D004142 ORTHO05D005411 4.1e-168 595.5 598 57.7
Nitab4.5_0005657g0020 Nicotiana tabacum HOM05D004142 ORTHO05D005411 2.0e-167 593.2 599 58.9
Lalb_Chr04g0251341 Lupinus albus HOM05D004142 ORTHO05D005411 2.6e-167 592.8 607 56.2
Phvul.008G235900 Phaseolus vulgaris HOM05D004142 ORTHO05D005411 6.5e-166 588.2 603 55.9
Glyma.02G245400 Glycine max HOM05D004142 ORTHO05D005411 2.5e-165 586.3 583 56.9
VMungo0647G1269 Vigna mungo HOM05D004142 ORTHO05D005411 1.6e-164 583.6 618 54.7
vmacro02340 Vaccinium macrocarpon HOM05D004142 ORTHO05D005411 2.1e-164 583.2 639 56.8
Psat2g043640 Pisum sativum HOM05D004142 ORTHO05D005411 2.7e-164 582.8 623 54.6
COL.COLO4_34310 Corchorus olitorius HOM05D004142 ORTHO05D005411 6.7e-163 578.2 629 54.7
RcHm_v2.0_Chr6g0280901 Rosa chinensis HOM05D004142 ORTHO05D005411 8.2e-161 571.2 627 53.1
Sed0023655 Sechium edule HOM05D004142 ORTHO05D005411 1.4e-160 570.5 625 55.5
TPR.G8874 Trifolium pratense HOM05D004142 ORTHO05D005411 3.1e-160 569.3 607 53.9
DCAR_005486 Daucus carota HOM05D004142 ORTHO05D005411 5.3e-160 568.5 639 54.0
EL10Ac9g21530 Beta vulgaris HOM05D004142 ORTHO05D005411 6.9e-160 568.2 602 54.0
TWI31G1182 Tripterygium wilfordii HOM05D004142 ORTHO05D005411 2.0e-159 566.6 625 55.7
Cc09_g10830 Coffea canephora HOM05D004142 ORTHO05D005411 3.4e-159 565.8 620 53.4
Nn5g31006 Nelumbo nucifera HOM05D004142 ORTHO05D005411 5.5e-157 558.5 587 57.9
FAN15G2670 Fragaria x ananassa HOM05D004142 ORTHO05D005411 2.1e-156 556.6 642 51.9
SGA_v2.0_scaffold98G29302 Striga asiatica HOM05D004142 ORTHO05D005411 2.7e-156 556.2 596 55.5
Sabra09G0130600 Salix brachista HOM05D004142 ORTHO05D005852 6.1e-156 555.1 587 55.7
Aa31LG8G14620 Aethionema arabicum HOM05D004142 ORTHO05D005411 3.0e-155 552.7 602 52.8
MSTRG.27614 Avicennia marina HOM05D004142 ORTHO05D005411 3.9e-155 552.4 605 53.7
Thhalv10022610m.g Eutrema salsugineum HOM05D004142 ORTHO05D005411 8.8e-155 551.2 610 52.5
LjContig00141g0017492 Lotus japonicus HOM05D004142 ORTHO05D005411 4.4e-154 548.9 603 54.4
BcaB07g31738 Brassica carinata HOM05D004142 ORTHO05D005411 5.7e-154 548.5 606 52.5
CARHR293590 Cardamine hirsuta HOM05D004142 ORTHO05D005411 1.7e-153 547.0 604 52.2
CAN.G397.37 Capsicum annuum HOM05D004142 ORTHO05D005411 2.2e-153 546.6 516 60.1
SalBow5G4664 Salvia bowleyana HOM05D004142 ORTHO05D005411 4.8e-153 545.4 593 56.0
SalBow5G1400 Salvia bowleyana HOM05D004142 ORTHO05D005411 6.3e-153 545.0 594 55.9
Sp3g30590 Schrenkiella parvula HOM05D004142 ORTHO05D005411 1.1e-152 544.3 609 52.2
CsaV3_7G001920 Cucumis sativus L. HOM05D004142 ORTHO05D005411 1.8e-152 543.5 606 54.0
MELO3C013248.2 Cucumis melo HOM05D004142 ORTHO05D005411 1.2e-151 540.8 629 53.4
AL3G50110 Arabidopsis lyrata HOM05D004142 ORTHO05D005411 1.5e-151 540.4 597 51.3
Hund06363 Selenicereus undatus HOM05D004142 ORTHO05D005411 2.6e-151 539.7 600 52.3
Sc08g0002210 Simmondsia chinensis HOM05D004142 ORTHO05D005411 5.9e-151 538.5 571 55.5
Ah.05g178840 Amaranthus hybridus HOM05D004142 ORTHO05D005411 1.7e-150 537.0 586 53.9
Atru.chr5.3556 Acer truncatum HOM05D004142 ORTHO05D005411 2.2e-150 536.6 570 56.5
Aqoxy6G01597 Aquilegia oxysepala HOM05D004142 ORTHO05D005411 5.0e-150 535.4 630 53.5
AT2G17250 Arabidopsis thaliana HOM05D004142 ORTHO05D005411 1.4e-149 533.9 594 52.0
A07p03800 Brassica napus HOM05D004142 ORTHO05D005411 3.2e-149 532.7 612 51.6
BcaB03g16472 Brassica carinata HOM05D004142 ORTHO05D005411 5.5e-149 531.9 589 52.1
C09p13280 Brassica napus HOM05D004142 ORTHO05D005411 1.2e-148 530.8 620 50.5
BolC9t54221H Brassica oleracea HOM05D004142 ORTHO05D005411 1.2e-148 530.8 620 50.5
Ca_01556_v3 Cicer arietinum L. HOM05D004142 ORTHO05D005411 1.6e-148 530.4 634 50.2
BraA07t28174Z Brassica rapa HOM05D004142 ORTHO05D005411 6.1e-148 528.5 612 50.7
ECA233G5375 Erigeron canadensis HOM05D004142 ORTHO05D005411 1.4e-147 527.3 577 53.6
HanXRQChr16g0515111 Helianthus annuus HOM05D004142 ORTHO05D005411 1.5e-146 523.9 581 53.9
BcaC04g22983 Brassica carinata HOM05D004142 ORTHO05D005411 4.4e-146 522.3 614 50.7
A09p11250 Brassica napus HOM05D004142 ORTHO05D005411 1.3e-145 520.8 612 50.3
HanXRQChr09g0239911 Helianthus annuus HOM05D004142 ORTHO05D005411 2.8e-145 519.6 575 54.1
Nitab4.5_0001700g0140 Nicotiana tabacum HOM05D004142 ORTHO05D005411 4.8e-145 518.8 565 57.5
THA.LOC104819692 Tarenaya hassleriana HOM05D004142 ORTHO05D005411 4.8e-145 518.8 636 50.0
BraA09t36766Z Brassica rapa HOM05D004142 ORTHO05D005411 3.1e-144 516.2 611 49.9
Carub.0003s3119 Capsella rubella HOM05D004142 ORTHO05D005411 1.7e-142 510.4 590 50.0
arahy.Tifrunner.gnm1.ann1.52DH7S Arachis hypogaea HOM05D004142 ORTHO05D005411 3.8e-142 509.2 636 49.5
arahy.Tifrunner.gnm1.ann1.FRA838 Arachis hypogaea HOM05D004142 ORTHO05D005411 1.1e-141 507.7 641 49.3
CDE05G3311 Ceratophyllum demersum HOM05D004142 ORTHO05D005411 5.5e-141 505.4 620 48.5
arahy.Tifrunner.gnm1.ann1.0H97XI Arachis hypogaea HOM05D004142 ORTHO05D005411 1.0e-139 501.1 635 49.3
Migut.B01359 Erythranthe guttata HOM05D004142 ORTHO05D005411 1.8e-139 500.4 627 49.8
PSO541G0415 Papaver somniferum HOM05D004142 ORTHO05D005411 1.2e-138 497.7 620 48.1
Lsat_1_v5_gn_5_183861 Lactuca sativa HOM05D004142 ORTHO05D005411 1.7e-137 493.8 584 51.4
PSO675G0945 Papaver somniferum HOM05D004142 ORTHO05D005411 9.1e-136 488.0 588 49.8
ClCG02G003400 Citrullus lanatus HOM05D004142 ORTHO05D005411 2.5e-133 479.9 633 49.0
MD05G1138800 Malus domestica HOM05D004142 ORTHO05D005411 5.5e-133 478.8 595 50.9
BcaC06g36246 Brassica carinata HOM05D004142 ORTHO05D005411 3.0e-131 473.0 589 49.9
ATR0807G091 Amborella trichopoda HOM05D004142 ORTHO05D005411 2.8e-129 466.5 620 48.2
Zm00001eb428130 Zea mays HOM05D004142 ORTHO05D005411 1.2e-127 461.1 603 45.9
AUR62010174 Chenopodium quinoa HOM05D004142 ORTHO05D005411 1.0e-126 458.0 481 55.7
Os04g0585300 Oryza sativa ssp. japonica HOM05D004142 ORTHO05D005411 1.0e-126 458.0 605 47.9
FvH4_2g16780 Fragaria vesca HOM05D004142 ORTHO05D005411 1.7e-126 457.2 507 54.0
C07p06050 Brassica napus HOM05D004142 ORTHO05D005411 5.5e-125 452.2 588 49.0
BolC7t41018H Brassica oleracea HOM05D004142 ORTHO05D005411 9.5e-125 451.4 480 55.0
AUR62013175 Chenopodium quinoa HOM05D004142 ORTHO05D005411 2.3e-123 446.8 485 55.7
TAR381G0855 Trochodendron aralioides HOM05D004142 ORTHO05D005411 2.0e-114 417.2 394 61.2
Mapoly0043s0054 Marchantia polymorpha HOM05D004142 ORTHO05D005411 2.7e-111 406.8 456 51.3
Pp3c9_12610 Physcomitrium patens HOM05D004142 ORTHO05D005411 1.4e-99 367.9 468 47.2
AagrBONN_evm.TU.Sc2ySwM_228.5327 Anthoceros agrestis HOM05D004142 ORTHO05D005411 1.2e-98 364.8 459 47.1
Cpa.g.sc60.17 Carica papaya HOM05D004142 ORTHO05D005411 2.4e-96 357.1 366 57.1
SHI03795 Sapria himalayana HOM05D004142 ORTHO05D005411 5.1e-86 322.8 267 64.8
BcaB07g31740 Brassica carinata HOM05D004142 ORTHO05D005411 2.2e-81 307.4 340 53.8
unitig_578.g16758 Utricularia gibba HOM05D004142 ORTHO05D005411 4.6e-79 299.7 579 37.3
SMO338G0043 Selaginella moellendorffii HOM05D004142 ORTHO05D005411 1.3e-78 298.1 299 54.8
ECA246G3488 Erigeron canadensis HOM05D004142 ORTHO05D005411 6.6e-78 295.8 357 49.6
HPP92_025664 Vanilla planifolia HOM05D004142 ORTHO05D005411 1.1e-72 278.5 284 56.0
CBR_g44269 Chara braunii HOM05D004142 ORTHO05D005411 9.3e-72 275.4 380 45.8
MD11G1014400 Malus domestica HOM05D004142 ORTHO05D005411 6.9e-67 259.2 343 48.4
Oeu037462.1 Olea europaea HOM05D004142 ORTHO05D005411 7.1e-64 249.2 385 45.5
Cre01.g068377 Chlamydomonas reinhardtii HOM05D004142 ORTHO05D005411 3.0e-54 217.2 318 39.9
PRCOL_00005396 Prasinoderma coloniale HOM05D004142 ORTHO05D005411 1.5e-53 214.9 441 32.9
Oeu037461.1 Olea europaea HOM05D004142 ORTHO05D005411 2.8e-52 210.7 119 85.7
MCO08G220 Micromonas commoda HOM05D004142 ORTHO05D005411 9.7e-45 185.7 231 42.4
Hma1.2p1_0796F.1_g219330 Hydrangea macrophylla HOM05D004142 ORTHO05D005411 3.1e-43 180.6 121 74.4
Lsat_1_v5_gn_5_64620 Lactuca sativa HOM05D004142 ORTHO05D005411 7.2e-40 169.5 134 69.4
SEGI_26341 Sequoiadendron giganteum HOM05D004142 ORTHO05D005411 7.9e-39 166.0 149 59.1
Cfa024410 Carpinus fangiana HOM05D004142 ORTHO05D005411 2.2e-36 157.9 266 35.3
Zm00001eb152690 Zea mays HOM05D004142 ORTHO05D000502 2.8e-36 157.5 102 73.5
Hma1.2p1_0151F.1_g067370 Hydrangea macrophylla HOM05D004142 ORTHO05D005411 4.0e-30 137.1 116 68.1
GSVIVG01004114001 Vitis vinifera HOM05D004142 ORTHO05D005411 1.5e-29 135.2 220 42.3
AagrBONN_evm.TU.Sc2ySwM_228.5299 Anthoceros agrestis HOM05D004142 ORTHO05D005411 7.4e-29 132.9 163 50.9
FAN27G1246 Fragaria x ananassa HOM05D004142 ORTHO05D005411 1.1e-27 129.0 128 63.3
CSS0025136 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 1.4e-27 128.6 148 62.2
SEGI_03267 Sequoiadendron giganteum HOM05D004142 ORTHO05D005411 2.4e-27 127.9 118 59.3
SEGI_12604 Sequoiadendron giganteum HOM05D004142 ORTHO05D005411 3.1e-27 127.5 118 58.5
AagrBONN_evm.TU.Sc2ySwM_228.5300 Anthoceros agrestis HOM05D004142 ORTHO05D005411 7.7e-26 122.9 223 34.5
Zm00001eb177550 Zea mays HOM05D004142 ORTHO05D005411 1.0e-25 122.5 87 72.4
Zm00001eb282240 Zea mays HOM05D004142 ORTHO05D005411 2.2e-25 121.3 87 72.4
TPR.G40409 Trifolium pratense HOM05D004142 ORTHO05D005411 5.5e-24 116.7 65 83.1
CSS0016900 Camellia sinensis var. sinensis HOM05D005838 ORTHO05D007177 1.4e-22 112.1 75 77.3
Ca_05793_v3 Cicer arietinum L. HOM05D004142 ORTHO05D005411 4.0e-22 110.5 216 36.1
Oeu003432.1 Olea europaea HOM05D004142 ORTHO05D005411 2.0e-21 108.2 112 52.7
Zm00001eb112060 Zea mays HOM05D004142 ORTHO05D005983 2.2e-20 104.8 74 74.3
Cpa.g.sc60.19 Carica papaya HOM05D004142 ORTHO05D005411 3.7e-20 104.0 224 34.8
Eucgr.H04983 Eucalyptus grandis HOM05D004142 ORTHO05D005411 6.3e-20 103.2 70 71.4
Medtr5g078810 Medicago truncatula HOM05D004142 ORTHO05D005411 6.5e-17 93.2 79 63.3
Lsat_1_v5_gn_5_140320 Lactuca sativa HOM05D004142 ORTHO05D036439 5.5e-16 90.1 150 43.3
Eucgr.H04975 Eucalyptus grandis HOM05D004142 ORTHO05D005411 2.7e-15 87.8 254 31.1
SHI03796 Sapria himalayana HOM05D004142 ORTHO05D005411 2.2e-12 78.2 197 29.4
Zm00001eb028530 Zea mays HOM05D004142 ORTHO05D000502 1.1e-11 75.9 49 75.5
TAR318G0001 Trochodendron aralioides HOM05D004142 ORTHO05D005411 5.4e-11 73.6 64 64.1
GSVIVG01004442001 Vitis vinifera HOM05D004142 ORTHO05D005411 1.6e-10 72.0 118 46.6
TPR.G18886 Trifolium pratense HOM05D000005 ORTHO05D000012 1.3e-09 68.9 49 67.3
BcaC04g22984 Brassica carinata HOM05D004142 ORTHO05D005411 2.3e-09 68.2 64 60.9
MD11G1014300 Malus domestica HOM05D004142 ORTHO05D005411 2.1e-07 61.6 64 59.4


User provided reference genes

Program Settings