Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0033952 Camellia sinensis var. sinensis HOM05D000108 ORTHO05D018822 1.3e-79 299.7 157 100.0
CSS0027714 Camellia sinensis var. sinensis HOM05D000108 ORTHO05D018822 1.3e-63 246.5 179 77.7
CSS0019330 Camellia sinensis var. sinensis HOM05D000108 ORTHO05D018822 5.9e-59 231.1 168 77.4
CSS0015807 Camellia sinensis var. sinensis HOM05D000108 ORTHO05D018822 4.2e-57 224.9 164 77.4
CSS0021968 Camellia sinensis var. sinensis HOM05D000108 ORTHO05D018822 5.5e-57 224.6 164 76.8
CSS0045520 Camellia sinensis var. sinensis HOM05D000108 ORTHO05D001724 5.3e-44 181.4 158 69.6
CSS0044546 Camellia sinensis var. sinensis HOM05D000108 ORTHO05D001724 1.5e-43 179.9 156 69.2
Actinidia06738 Actinidia chinensis HOM05D000108 ORTHO05D001724 5.0e-34 148.3 158 58.2
Dinv36392 Davidia involucrata HOM05D000108 ORTHO05D001724 7.2e-33 144.4 158 55.7
Ciclev10030573m.g Citrus clementina HOM05D000108 ORTHO05D001724 6.3e-29 131.3 156 50.0
Cfa001680 Carpinus fangiana HOM05D000108 ORTHO05D001724 5.9e-27 124.8 156 48.1
GSVIVG01016220001 Vitis vinifera HOM05D003228 ORTHO05D001724 7.7e-27 124.4 155 51.0
Gorai.011G236400 Gossypium raimondii HOM05D000108 ORTHO05D001724 2.3e-23 112.8 156 45.5
CiPaw.01G268600 Carya illinoinensis HOM05D000108 ORTHO05D001724 5.2e-23 111.7 156 46.8
Cpa.g.sc53.131 Carica papaya HOM05D000108 ORTHO05D001724 6.8e-23 111.3 151 49.0
Gohir.D10G210800 Gossypium hirsutum HOM05D000108 ORTHO05D001724 1.2e-22 110.5 156 44.9
TWI63G0200 Tripterygium wilfordii HOM05D000108 ORTHO05D001724 5.7e-22 108.2 156 45.5
FAN03G2395 Fragaria x ananassa HOM05D000108 ORTHO05D001724 8.3e-21 104.4 155 43.9
MD01G1103200 Malus domestica HOM05D000108 ORTHO05D001724 1.4e-20 103.6 154 46.1
FvH4_7g18790 Fragaria vesca HOM05D000108 ORTHO05D001724 1.8e-20 103.2 156 44.2
FAN06G1146 Fragaria x ananassa HOM05D000108 ORTHO05D001724 1.8e-20 103.2 156 44.2
FAN06G2234 Fragaria x ananassa HOM05D000108 ORTHO05D001724 1.8e-20 103.2 156 44.2
RcHm_v2.0_Chr1g0362591 Rosa chinensis HOM05D000108 ORTHO05D001724 1.8e-20 103.2 154 42.9
FAN01G0155 Fragaria x ananassa HOM05D000108 ORTHO05D001724 5.4e-20 101.7 154 43.5
Oeu007409.1 Olea europaea HOM05D000108 ORTHO05D001724 5.4e-20 101.7 153 43.1
MD07G1169900 Malus domestica HOM05D000108 ORTHO05D001724 7.0e-20 101.3 153 44.4
FAN10G1740 Fragaria x ananassa HOM05D000108 ORTHO05D001724 2.7e-19 99.4 155 41.3
FAN10G3052 Fragaria x ananassa HOM05D000108 ORTHO05D001724 2.7e-19 99.4 155 41.3
ECA233G5278 Erigeron canadensis HOM05D000108 ORTHO05D001724 4.5e-19 98.6 158 40.5
QL08p054367 Quercus lobata HOM05D000108 ORTHO05D001724 1.7e-18 96.7 148 42.6
QL08p054496 Quercus lobata HOM05D000108 ORTHO05D001724 1.7e-18 96.7 148 42.6
Potri.010G227000 Populus trichocarpa HOM05D000108 ORTHO05D001724 2.9e-18 95.9 139 43.2
ClCG08G007710 Citrullus lanatus HOM05D000108 ORTHO05D001724 3.8e-18 95.5 179 37.4
MELO3C019823.2 Cucumis melo HOM05D000108 ORTHO05D001724 7.2e-17 91.3 154 40.9
Prupe.2G208800 Prunus persica HOM05D000108 ORTHO05D001724 2.1e-16 89.7 156 41.7
Manes.05G201200 Manihot esculenta HOM05D000108 ORTHO05D001724 6.1e-16 88.2 155 42.6
Sed0027974 Sechium edule HOM05D000108 ORTHO05D001724 1.4e-15 87.0 154 40.3
MBI18_g01552_MAGBIO Magnolia biondii HOM05D000108 ORTHO05D001724 1.8e-15 86.7 138 42.0
HanXRQChr08g0218531 Helianthus annuus HOM05D000108 ORTHO05D001724 3.0e-15 85.9 158 38.0
PSO063G0754 Papaver somniferum HOM05D000108 ORTHO05D001724 4.0e-15 85.5 150 38.0
CANSAT56G2924 Cannabis sativa HOM05D000108 ORTHO05D001724 5.2e-15 85.1 158 37.3
CsaV3_6G036700 Cucumis sativus L. HOM05D000108 ORTHO05D001724 6.8e-15 84.7 153 39.2
PSO339G0808 Papaver somniferum HOM05D000108 ORTHO05D001724 8.9e-15 84.3 150 37.3
Cc02_g10930 Coffea canephora HOM05D000108 ORTHO05D001724 2.0e-14 83.2 161 36.6
Haze_16873 Corylus avellana HOM05D000108 ORTHO05D001724 2.6e-14 82.8 73 60.3
Eucgr.J01062 Eucalyptus grandis HOM05D000108 ORTHO05D001724 2.6e-14 82.8 141 38.3
Gohir.A10G202600 Gossypium hirsutum HOM05D000108 ORTHO05D001724 1.7e-13 80.1 190 33.7
Lj2A20G44 Lonicera japonica HOM05D000108 ORTHO05D001724 8.3e-13 77.8 141 37.6
TAR636G1445 Trochodendron aralioides HOM05D000108 ORTHO05D001724 3.1e-12 75.9 109 44.0
Rhsim03G0115900 Rhododendron simsii HOM05D000108 ORTHO05D001724 4.1e-12 75.5 71 60.6
Thecc.10G083400 Theobroma cacao HOM05D000108 ORTHO05D001724 5.4e-12 75.1 81 53.1
MSTRG.9150 Avicennia marina HOM05D000108 ORTHO05D001724 1.2e-11 73.9 129 39.5
Sp5g07550 Schrenkiella parvula HOM05D000108 ORTHO05D001724 2.0e-11 73.2 158 35.4
CAN.G321.63 Capsicum annuum HOM05D000108 ORTHO05D001724 2.7e-11 72.8 200 33.5
Solyc11g008350.2 Solanum lycopersicum HOM05D000108 ORTHO05D001724 3.5e-11 72.4 154 35.7
Nitab4.5_0001659g0160 Nicotiana tabacum HOM05D000108 ORTHO05D001724 7.8e-11 71.2 138 37.7
Nitab4.5_0001450g0060 Nicotiana tabacum HOM05D000108 ORTHO05D001724 1.3e-10 70.5 138 38.4
CARHR164850 Cardamine hirsuta HOM05D000108 ORTHO05D001724 1.7e-10 70.1 158 34.8
Thhalv10010108m.g Eutrema salsugineum HOM05D000108 ORTHO05D001724 2.3e-10 69.7 164 32.9
ATR1126G033 Amborella trichopoda HOM05D000108 ORTHO05D001724 2.9e-10 69.3 151 35.8
BcaB01g00151 Brassica carinata HOM05D000108 ORTHO05D001724 2.9e-10 69.3 164 32.9
COL.COLO4_33386 Corchorus olitorius HOM05D000108 ORTHO05D001724 2.9e-10 69.3 98 48.0
BcaC07g39771 Brassica carinata HOM05D000108 ORTHO05D001724 5.0e-10 68.6 164 32.3
A09p47810 Brassica napus HOM05D000108 ORTHO05D001724 5.0e-10 68.6 164 32.9
BolC8t50615H Brassica oleracea HOM05D000108 ORTHO05D001724 5.0e-10 68.6 164 32.3
BraA09t40238Z Brassica rapa HOM05D000108 ORTHO05D001724 5.0e-10 68.6 164 32.9
Sopen11g004160 Solanum pennellii HOM05D000108 ORTHO05D001724 6.6e-10 68.2 154 35.1
Duzib114G0930 Durio zibethinus HOM05D000108 ORTHO05D001724 8.6e-10 67.8 81 49.4
AT3G54870 Arabidopsis thaliana HOM05D000108 ORTHO05D001724 1.5e-09 67.0 163 33.1
C08p30060 Brassica napus HOM05D000108 ORTHO05D001724 1.5e-09 67.0 164 31.7
Peaxi162Scf00145g01216 Petunia axillaris HOM05D000108 ORTHO05D001724 2.5e-09 66.2 158 35.4
Gorai.012G006000 Gossypium raimondii HOM05D000108 ORTHO05D001724 3.3e-09 65.9 156 34.0
Gohir.A05G411200 Gossypium hirsutum HOM05D000108 ORTHO05D001724 4.3e-09 65.5 155 36.8
Gohir.D04G004800 Gossypium hirsutum HOM05D000108 ORTHO05D001724 4.3e-09 65.5 157 34.4
Sabra10G0175100 Salix brachista HOM05D000108 ORTHO05D001724 5.6e-09 65.1 138 34.8
Lsat_1_v5_gn_8_20800 Lactuca sativa HOM05D000108 ORTHO05D001724 2.8e-08 62.8 85 45.9
Lj2A20T48 Lonicera japonica HOM05D010180 ORTHO05D018822 8.0e-08 61.2 54 55.6
AL5G35980 Arabidopsis lyrata HOM05D000108 ORTHO05D001724 1.4e-07 60.5 160 32.5
Aqoxy1G01143 Aquilegia oxysepala HOM05D000108 ORTHO05D001724 2.3e-07 59.7 107 37.4
Haze_16855 Corylus avellana HOM05D000108 ORTHO05D001724 6.8e-07 58.2 99 38.4
AUR62014259 Chenopodium quinoa HOM05D000108 ORTHO05D001724 8.9e-07 57.8 99 38.4
AUR62038481 Chenopodium quinoa HOM05D000108 ORTHO05D001724 1.5e-06 57.0 74 43.2
Aa31sc43G100 Aethionema arabicum HOM05D000108 ORTHO05D001724 2.6e-06 56.2 163 28.8
Sc06g0001660 Simmondsia chinensis HOM05D000108 ORTHO05D001724 7.5e-06 54.7 203 25.6
SGA_v2.0_scaffold62G21388 Striga asiatica HOM05D000108 ORTHO05D001724 7.5e-06 54.7 81 42.0


User provided reference genes

Program Settings