Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0033898 Camellia sinensis var. sinensis HOM05D007526 ORTHO05D009350 2.6e-98 362.1 184 100.0
CSS0016058 Camellia sinensis var. sinensis HOM05D007526 ORTHO05D009350 1.0e-86 323.6 184 92.9
Cfa022958 Carpinus fangiana HOM05D007526 ORTHO05D009350 4.5e-26 122.1 194 41.2
QL06p017957 Quercus lobata HOM05D007526 ORTHO05D009350 7.7e-26 121.3 192 43.2
Haze_11381 Corylus avellana HOM05D007526 ORTHO05D009350 1.0e-25 120.9 194 39.7
Rhsim04G0182300 Rhododendron simsii HOM05D007526 ORTHO05D009350 6.1e-23 111.7 195 45.1
TAR365G0977 Trochodendron aralioides HOM05D007526 ORTHO05D009350 5.1e-22 108.6 193 39.9
Duzib151G1045 Durio zibethinus HOM05D007526 ORTHO05D009350 8.8e-22 107.8 207 38.6
Cc03_g05540 Coffea canephora HOM05D007526 ORTHO05D009350 1.5e-21 107.1 198 42.4
Atru.chr4.2058 Acer truncatum HOM05D007526 ORTHO05D009350 2.0e-21 106.7 181 40.3
Duzib212G0007 Durio zibethinus HOM05D007526 ORTHO05D009350 2.0e-21 106.7 202 39.1
RcHm_v2.0_Chr4g0393211 Rosa chinensis HOM05D007526 ORTHO05D009350 2.0e-21 106.7 201 38.8
Thecc.04G255400 Theobroma cacao HOM05D007526 ORTHO05D009350 3.3e-21 105.9 200 36.0
Ciclev10005975m.g Citrus clementina HOM05D007526 ORTHO05D009350 7.4e-21 104.8 193 37.3
FvH4_4g03670 Fragaria vesca HOM05D007526 ORTHO05D009350 9.7e-21 104.4 196 39.3
FAN12G2381 Fragaria x ananassa HOM05D007526 ORTHO05D009350 1.3e-20 104.0 196 39.3
Lj6g0011756 Lotus japonicus HOM05D007526 ORTHO05D009350 1.7e-20 103.6 194 39.2
FAN17G0331 Fragaria x ananassa HOM05D007526 ORTHO05D009350 2.2e-20 103.2 196 39.3
MD13G1214200 Malus domestica HOM05D007526 ORTHO05D009350 2.2e-20 103.2 219 37.4
Oeu055231.1 Olea europaea HOM05D007526 ORTHO05D009350 4.8e-20 102.1 206 41.3
MBI07_g16245_MAGBIO Magnolia biondii HOM05D007526 ORTHO05D009350 8.2e-20 101.3 196 38.8
Eucgr.H03043 Eucalyptus grandis HOM05D007526 ORTHO05D009350 1.4e-19 100.5 205 38.5
Prupe.1G039600 Prunus persica HOM05D007526 ORTHO05D009350 3.1e-19 99.4 223 37.2
VMungo0720G1630 Vigna mungo HOM05D007526 ORTHO05D009350 3.1e-19 99.4 201 36.8
Gorai.006G253500 Gossypium raimondii HOM05D007526 ORTHO05D009350 4.1e-19 99.0 203 34.0
CiPaw.01G184600 Carya illinoinensis HOM05D007526 ORTHO05D009350 5.3e-19 98.6 199 39.7
Gohir.A09G229800 Gossypium hirsutum HOM05D007526 ORTHO05D009350 9.1e-19 97.8 203 34.5
Lalb_Chr19g0128211 Lupinus albus HOM05D007526 ORTHO05D009350 2.0e-18 96.7 204 38.7
TAR636G0759 Trochodendron aralioides HOM05D007526 ORTHO05D009350 2.6e-18 96.3 189 38.6
Medtr1g042820 Medicago truncatula HOM05D007526 ORTHO05D009350 1.3e-17 94.0 195 39.0
TPR.G25185 Trifolium pratense HOM05D007526 ORTHO05D009350 1.3e-17 94.0 198 36.4
Glyma.10G181000 Glycine max HOM05D007526 ORTHO05D009350 2.2e-17 93.2 196 35.7
Glyma.20G209500 Glycine max HOM05D007526 ORTHO05D009350 2.9e-17 92.8 194 36.1
CsaV3_3G012050 Cucumis sativus L. HOM05D007526 ORTHO05D009350 3.8e-17 92.4 208 36.1
Glyma.02G005400 Glycine max HOM05D007526 ORTHO05D009350 3.8e-17 92.4 214 35.5
MD16G1219200 Malus domestica HOM05D007526 ORTHO05D009350 3.8e-17 92.4 222 33.3
Sopen09g033060 Solanum pennellii HOM05D007526 ORTHO05D009350 1.1e-16 90.9 230 34.8
Aqoxy5G00249 Aquilegia oxysepala HOM05D007526 ORTHO05D009350 1.9e-16 90.1 218 35.8
MELO3C006420.2 Cucumis melo HOM05D007526 ORTHO05D009350 3.2e-16 89.4 209 34.9
Potri.008G167200 Populus trichocarpa HOM05D007526 ORTHO05D009350 5.5e-16 88.6 198 35.9
EL10Ac3g05005 Beta vulgaris HOM05D007526 ORTHO05D009350 7.2e-16 88.2 212 37.7
Cpa.g.sc44.57 Carica papaya HOM05D007526 ORTHO05D009350 9.4e-16 87.8 198 35.4
Psat6g104840 Pisum sativum HOM05D007526 ORTHO05D009350 9.4e-16 87.8 195 36.9
PGSC0003DMG400017266 Solanum tuberosum HOM05D007526 ORTHO05D009350 1.6e-15 87.0 232 32.3
Glyma.10G006400 Glycine max HOM05D007526 ORTHO05D009350 2.1e-15 86.7 227 33.5
Manes.15G040900 Manihot esculenta HOM05D007526 ORTHO05D009350 2.7e-15 86.3 206 32.5
VMungo0720G0856 Vigna mungo HOM05D007526 ORTHO05D009350 6.1e-15 85.1 237 32.5
Ah.04g155760 Amaranthus hybridus HOM05D007526 ORTHO05D009350 1.0e-14 84.3 216 38.0
Manes.03G164000 Manihot esculenta HOM05D007526 ORTHO05D009350 1.0e-14 84.3 207 33.3
PGR004G2347 Punica granatum HOM05D007526 ORTHO05D009350 1.8e-14 83.6 202 34.2
DCAR_027319 Daucus carota HOM05D007526 ORTHO05D009350 2.3e-14 83.2 193 36.8
Phvul.007G108400 Phaseolus vulgaris HOM05D007526 ORTHO05D009350 3.9e-14 82.4 195 35.4
AUR62015571 Chenopodium quinoa HOM05D007526 ORTHO05D009350 6.7e-14 81.6 211 35.5
TWI09G0237 Tripterygium wilfordii HOM05D007526 ORTHO05D009350 8.8e-14 81.3 205 32.7
Glyma.20G209600 Glycine max HOM05D007526 ORTHO05D009350 1.5e-13 80.5 192 33.3
Nn1g02762 Nelumbo nucifera HOM05D007526 ORTHO05D009350 1.5e-13 80.5 231 34.2
Dinv27054 Davidia involucrata HOM05D007526 ORTHO05D009350 3.3e-13 79.3 99 52.5
QL06p018008 Quercus lobata HOM05D007526 ORTHO05D009350 3.3e-13 79.3 137 41.6
arahy.Tifrunner.gnm1.ann1.STCN49 Arachis hypogaea HOM05D007526 ORTHO05D009350 4.4e-13 79.0 206 34.0
arahy.Tifrunner.gnm1.ann1.582VFN Arachis hypogaea HOM05D007526 ORTHO05D009350 7.4e-13 78.2 206 33.5
Sed0008521 Sechium edule HOM05D007526 ORTHO05D009350 1.3e-12 77.4 207 31.4
CANSAT78G2320 Cannabis sativa HOM05D007526 ORTHO05D009350 4.8e-12 75.5 228 29.8
Actinidia01843 Actinidia chinensis HOM05D007526 ORTHO05D009350 8.2e-12 74.7 81 55.6
Nn3g19655 Nelumbo nucifera HOM05D007526 ORTHO05D009350 8.2e-12 74.7 233 32.2
Hma1.2p1_0267F.1_g107260 Hydrangea macrophylla HOM05D007526 ORTHO05D009350 1.1e-11 74.3 85 51.8
Sp3g20910 Schrenkiella parvula HOM05D007526 ORTHO05D009350 2.4e-11 73.2 196 32.7
AL7G41840 Arabidopsis lyrata HOM05D007526 ORTHO05D009350 4.1e-11 72.4 203 28.1
Sabra08G0127400 Salix brachista HOM05D007526 ORTHO05D009350 4.1e-11 72.4 184 33.7
BraA04t16457Z Brassica rapa HOM05D007526 ORTHO05D009350 5.3e-11 72.0 208 31.7
A04p07660 Brassica napus HOM05D007526 ORTHO05D009350 9.1e-11 71.2 208 30.8
Thhalv10026764m.g Eutrema salsugineum HOM05D007526 ORTHO05D009350 1.2e-10 70.9 205 28.3
BcaB02g08612 Brassica carinata HOM05D007526 ORTHO05D009350 2.0e-10 70.1 211 29.4
Phvul.007G273600 Phaseolus vulgaris HOM05D007526 ORTHO05D009350 4.5e-10 68.9 239 29.7
C04p41350 Brassica napus HOM05D007526 ORTHO05D009350 1.0e-09 67.8 208 30.3
BolC7t41918H Brassica oleracea HOM05D007526 ORTHO05D009350 1.7e-09 67.0 195 28.7
QL09p038772 Quercus lobata HOM05D008367 ORTHO05D010529 1.7e-09 67.0 197 31.5
BcaC02g09320 Brassica carinata HOM05D007526 ORTHO05D009350 2.9e-09 66.2 208 29.8
BolC4t25713H Brassica oleracea HOM05D007526 ORTHO05D009350 2.9e-09 66.2 208 29.8
THA.LOC104808623 Tarenaya hassleriana HOM05D007526 ORTHO05D009350 2.9e-09 66.2 202 27.7
Lsat_1_v5_gn_3_120620 Lactuca sativa HOM05D064852 ORTHO05D009350 5.0e-09 65.5 132 34.8
Lj5g0022077 Lotus japonicus HOM05D007526 ORTHO05D009350 5.0e-09 65.5 214 29.4
Hma1.2p1_0273F.1_g109700 Hydrangea macrophylla HOM05D008367 ORTHO05D010529 6.5e-09 65.1 205 32.7
Potri.005G224200 Populus trichocarpa HOM05D008367 ORTHO05D010529 8.5e-09 64.7 188 31.9
Thhalv10022185m.g Eutrema salsugineum HOM05D007526 ORTHO05D009350 1.1e-08 64.3 194 29.4
C07p14270 Brassica napus HOM05D007526 ORTHO05D009350 2.5e-08 63.2 190 28.4
CARHR220600 Cardamine hirsuta HOM05D007526 ORTHO05D009350 2.5e-08 63.2 189 27.5
Glyma.10G180900 Glycine max HOM05D007526 ORTHO05D009350 3.2e-08 62.8 194 29.4
Haze_24631 Corylus avellana HOM05D008367 ORTHO05D010529 4.2e-08 62.4 163 32.5
Gohir.D09G230800 Gossypium hirsutum HOM05D007526 ORTHO05D009350 7.2e-08 61.6 175 27.4
Carub.0007s2786 Capsella rubella HOM05D007526 ORTHO05D009350 1.2e-07 60.8 230 26.5
Sp7g12460 Schrenkiella parvula HOM05D007526 ORTHO05D009350 1.2e-07 60.8 218 27.1
AT4G14380 Arabidopsis thaliana HOM05D007526 ORTHO05D009350 2.1e-07 60.1 207 27.1
Cc01_g18350 Coffea canephora HOM05D008367 ORTHO05D010529 2.1e-07 60.1 206 30.1
TPR.G1498 Trifolium pratense HOM05D007526 ORTHO05D009350 2.1e-07 60.1 188 31.4
A07p09230 Brassica napus HOM05D007526 ORTHO05D009350 3.6e-07 59.3 190 28.9
Actinidia27694 Actinidia chinensis HOM05D008367 ORTHO05D010529 6.1e-07 58.5 187 32.6
Migut.G00517 Erythranthe guttata HOM05D007526 ORTHO05D009350 8.0e-07 58.2 63 54.0
Cfa002424 Carpinus fangiana HOM05D008367 ORTHO05D010529 1.0e-06 57.8 164 30.5
Ciclev10022407m.g Citrus clementina HOM05D008367 ORTHO05D010529 1.4e-06 57.4 188 28.7
CARHR099230 Cardamine hirsuta HOM05D007526 ORTHO05D009350 2.3e-06 56.6 189 27.0
Rhsim01G0263900 Rhododendron simsii HOM05D008367 ORTHO05D010529 2.3e-06 56.6 207 29.5
Medtr1g076110 Medicago truncatula HOM05D007526 ORTHO05D009350 4.0e-06 55.8 115 35.7
CiPaw.03G264200 Carya illinoinensis HOM05D008367 ORTHO05D010529 5.2e-06 55.5 187 30.5
COL.COLO4_15878 Corchorus olitorius HOM05D007526 ORTHO05D009350 5.2e-06 55.5 96 39.6
Hma1.2p1_0576F.1_g182070 Hydrangea macrophylla HOM05D008367 ORTHO05D010529 8.8e-06 54.7 198 30.8


User provided reference genes

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