Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0033893 Camellia sinensis var. sinensis HOM05D004560 ORTHO05D005540 0.0e+00 3910.5 2124 100.0
CSS0026663 Camellia sinensis var. sinensis HOM05D004560 ORTHO05D005540 0.0e+00 3830.4 2140 98.1
Actinidia03789 Actinidia chinensis HOM05D004560 ORTHO05D005540 0.0e+00 2702.5 2165 74.0
Rhsim08G0100900 Rhododendron simsii HOM05D004560 ORTHO05D005540 0.0e+00 2325.1 2181 67.3
vmacro17949 Vaccinium macrocarpon HOM05D004560 ORTHO05D005540 0.0e+00 2316.2 2158 67.0
QL06p041719 Quercus lobata HOM05D004560 ORTHO05D005540 0.0e+00 2249.2 2209 63.0
Cfa004012 Carpinus fangiana HOM05D004560 ORTHO05D005540 0.0e+00 2196.4 2201 61.5
Prupe.7G134200 Prunus persica HOM05D004560 ORTHO05D005540 0.0e+00 2186.0 2231 61.9
CiPaw.02G008700 Carya illinoinensis HOM05D004560 ORTHO05D005540 0.0e+00 2109.7 2208 60.3
Thecc.01G055000 Theobroma cacao HOM05D004560 ORTHO05D005540 0.0e+00 2106.6 2195 60.5
TAR376G0591 Trochodendron aralioides HOM05D004560 ORTHO05D005540 0.0e+00 2098.2 2201 60.8
MD02G1171200 Malus domestica HOM05D004560 ORTHO05D005540 0.0e+00 2097.4 2236 59.4
Dinv39857 Davidia involucrata HOM05D004560 ORTHO05D005540 0.0e+00 2082.4 1790 71.1
MD15G1283100 Malus domestica HOM05D004560 ORTHO05D005540 0.0e+00 2054.6 2238 58.6
Duzib147G0064 Durio zibethinus HOM05D004560 ORTHO05D005540 0.0e+00 2044.6 2197 58.8
Lj7A70T81 Lonicera japonica HOM05D004560 ORTHO05D005540 0.0e+00 2037.7 2178 60.1
CANSAT01G1534 Cannabis sativa HOM05D004560 ORTHO05D005540 0.0e+00 2035.4 2187 59.5
Duzib187G0053 Durio zibethinus HOM05D004560 ORTHO05D005540 0.0e+00 2028.8 2201 58.8
Nn5g30326 Nelumbo nucifera HOM05D004560 ORTHO05D005540 0.0e+00 2025.8 2209 59.0
RcHm_v2.0_Chr2g0105371 Rosa chinensis HOM05D004560 ORTHO05D005540 0.0e+00 2024.6 2236 58.2
Ciclev10024681m.g Citrus clementina HOM05D004560 ORTHO05D005540 0.0e+00 2015.0 2197 57.4
GSVIVG01022139001 Vitis vinifera HOM05D004560 ORTHO05D005540 0.0e+00 1994.9 2155 59.7
Nn1g04868 Nelumbo nucifera HOM05D004560 ORTHO05D005540 0.0e+00 1983.4 2204 58.6
Duzib264G0542 Durio zibethinus HOM05D004560 ORTHO05D005540 0.0e+00 1983.0 2201 57.7
FvH4_5g28170 Fragaria vesca HOM05D004560 ORTHO05D005540 0.0e+00 1967.6 2259 56.5
FAN18G2522 Fragaria x ananassa HOM05D004560 ORTHO05D005540 0.0e+00 1954.5 2267 56.2
Gorai.008G075400 Gossypium raimondii HOM05D004560 ORTHO05D005540 0.0e+00 1950.3 2199 56.9
TAR381G0340 Trochodendron aralioides HOM05D004560 ORTHO05D005540 0.0e+00 1949.1 2216 58.1
CAN.G836.79 Capsicum annuum HOM05D004560 ORTHO05D005540 0.0e+00 1947.2 2184 58.0
Gohir.D12G068900 Gossypium hirsutum HOM05D004560 ORTHO05D005540 0.0e+00 1943.7 2198 56.8
Nitab4.5_0001034g0140 Nicotiana tabacum HOM05D004560 ORTHO05D005540 0.0e+00 1941.8 2147 58.1
Nitab4.5_0002016g0010 Nicotiana tabacum HOM05D004560 ORTHO05D005540 0.0e+00 1940.6 2191 57.9
FAN08G1993 Fragaria x ananassa HOM05D004560 ORTHO05D005540 0.0e+00 1929.8 2261 55.9
Gohir.A12G072000 Gossypium hirsutum HOM05D004560 ORTHO05D005540 0.0e+00 1926.4 2201 56.5
Potri.005G137700 Populus trichocarpa HOM05D004560 ORTHO05D005540 0.0e+00 1924.8 2201 57.4
TWI09G1111 Tripterygium wilfordii HOM05D004560 ORTHO05D005540 0.0e+00 1921.4 2180 57.7
FAN04G2449 Fragaria x ananassa HOM05D004560 ORTHO05D005540 0.0e+00 1921.0 2261 55.6
Potri.007G043300 Populus trichocarpa HOM05D004560 ORTHO05D005540 0.0e+00 1920.6 2199 57.0
Sopen02g035390 Solanum pennellii HOM05D004560 ORTHO05D005540 0.0e+00 1919.8 2176 58.0
Manes.12G101400 Manihot esculenta HOM05D004560 ORTHO05D005540 0.0e+00 1902.9 2197 56.1
Solyc02g090760.4 Solanum lycopersicum HOM05D004560 ORTHO05D005540 0.0e+00 1892.5 2147 57.5
TWI73G0239 Tripterygium wilfordii HOM05D004560 ORTHO05D005540 0.0e+00 1892.1 2185 56.0
Peaxi162Scf00450g00514 Petunia axillaris HOM05D004560 ORTHO05D005540 0.0e+00 1881.3 2319 54.2
TWI53G0832 Tripterygium wilfordii HOM05D004560 ORTHO05D005540 0.0e+00 1871.7 2185 55.7
Manes.12G101200 Manihot esculenta HOM05D004560 ORTHO05D005540 0.0e+00 1864.7 2209 55.0
Gohir.D12G068700 Gossypium hirsutum HOM05D004560 ORTHO05D005540 0.0e+00 1859.3 2202 55.7
Oeu039071.1 Olea europaea HOM05D004560 ORTHO05D005540 0.0e+00 1857.4 2200 55.3
MBI02_g02993_MAGBIO Magnolia biondii HOM05D004560 ORTHO05D005540 0.0e+00 1855.9 2221 54.9
Gorai.008G075200 Gossypium raimondii HOM05D004560 ORTHO05D005540 0.0e+00 1853.6 2202 55.4
Gohir.A12G070800 Gossypium hirsutum HOM05D004560 ORTHO05D005540 0.0e+00 1848.9 2201 55.1
Sabra05G0109900 Salix brachista HOM05D004560 ORTHO05D005540 0.0e+00 1835.1 2196 54.4
Sabra07G0038200 Salix brachista HOM05D004560 ORTHO05D005540 0.0e+00 1823.5 2204 54.6
ClCG01G016790 Citrullus lanatus HOM05D004560 ORTHO05D005540 0.0e+00 1796.6 2192 54.4
arahy.Tifrunner.gnm1.ann1.TDMJ0N Arachis hypogaea HOM05D004560 ORTHO05D005540 0.0e+00 1792.3 2199 54.5
Lj4g0000036 Lotus japonicus HOM05D004560 ORTHO05D005540 0.0e+00 1784.2 2207 53.6
arahy.Tifrunner.gnm1.ann1.IC24VR Arachis hypogaea HOM05D004560 ORTHO05D005540 0.0e+00 1781.1 2197 54.2
COL.COLO4_11405 Corchorus olitorius HOM05D004560 ORTHO05D005540 0.0e+00 1757.3 2177 54.6
Phvul.003G244225 Phaseolus vulgaris HOM05D004560 ORTHO05D005540 0.0e+00 1749.9 2186 53.3
VMungo0251G0843 Vigna mungo HOM05D004560 ORTHO05D005540 0.0e+00 1744.6 2183 53.9
Glyma.17G175000 Glycine max HOM05D004560 ORTHO05D005540 0.0e+00 1739.9 2187 53.8
Eucgr.I00932 Eucalyptus grandis HOM05D004560 ORTHO05D005540 0.0e+00 1730.3 2184 54.3
Sc03g0001520 Simmondsia chinensis HOM05D004560 ORTHO05D005540 0.0e+00 1729.9 2190 53.0
Aqoxy5G01239 Aquilegia oxysepala HOM05D004560 ORTHO05D005540 0.0e+00 1711.4 2194 51.5
Cc07_g19160 Coffea canephora HOM05D004560 ORTHO05D005540 0.0e+00 1696.8 2199 53.8
CsaV3_6G043220 Cucumis sativus L. HOM05D004560 ORTHO05D005540 0.0e+00 1686.4 2191 52.6
Ca_19501_v3 Cicer arietinum L. HOM05D004560 ORTHO05D005540 0.0e+00 1668.3 2215 52.0
Hund13557 Selenicereus undatus HOM05D004560 ORTHO05D005540 0.0e+00 1657.1 2187 52.1
AUR62003874 Chenopodium quinoa HOM05D004560 ORTHO05D005540 0.0e+00 1638.6 2181 50.7
AUR62001937 Chenopodium quinoa HOM05D004560 ORTHO05D005540 0.0e+00 1635.2 2155 50.9
Haze_15408 Corylus avellana HOM05D004560 ORTHO05D005540 0.0e+00 1625.1 1796 57.0
DCAR_014074 Daucus carota HOM05D004560 ORTHO05D005540 0.0e+00 1620.5 2171 50.9
ECA238G3505 Erigeron canadensis HOM05D004560 ORTHO05D005540 0.0e+00 1614.4 2167 51.8
Glyma.05G096000 Glycine max HOM05D004560 ORTHO05D005540 0.0e+00 1613.2 2179 51.4
Psat4g089080 Pisum sativum HOM05D004560 ORTHO05D005540 0.0e+00 1612.4 2270 47.7
TPR.G10251 Trifolium pratense HOM05D004560 ORTHO05D005540 0.0e+00 1607.8 2243 50.6
Lalb_Chr16g0378501 Lupinus albus HOM05D004560 ORTHO05D005540 0.0e+00 1604.0 2177 50.5
MSTRG.23750 Avicennia marina HOM05D004560 ORTHO05D005540 0.0e+00 1587.8 2198 51.0
Sed0025145 Sechium edule HOM05D004560 ORTHO05D005540 0.0e+00 1573.9 2192 51.0
Lalb_Chr09g0323121 Lupinus albus HOM05D004560 ORTHO05D005540 0.0e+00 1567.4 2179 49.2
Sed0014897 Sechium edule HOM05D004560 ORTHO05D005540 0.0e+00 1542.3 2192 50.7
PGR031G0319 Punica granatum HOM05D004560 ORTHO05D005540 0.0e+00 1527.7 2180 50.6
Lalb_Chr09g0323141 Lupinus albus HOM05D004560 ORTHO05D005540 0.0e+00 1470.3 2184 48.7
Lsat_1_v5_gn_2_84180 Lactuca sativa HOM05D004560 ORTHO05D005540 0.0e+00 1466.8 2167 49.5
EL10Ac4g07947 Beta vulgaris HOM05D004560 ORTHO05D005540 0.0e+00 1430.2 2141 48.3
HanXRQChr14g0448241 Helianthus annuus HOM05D004560 ORTHO05D005540 0.0e+00 1411.0 2143 48.4
PSO384G0851 Papaver somniferum HOM05D004560 ORTHO05D005540 0.0e+00 1390.2 2253 45.4
PSO017G5866 Papaver somniferum HOM05D004560 ORTHO05D005540 0.0e+00 1373.2 2187 45.8
THA.LOC104819234 Tarenaya hassleriana HOM05D004560 ORTHO05D005540 0.0e+00 1370.1 2159 47.4
PSO135G0768 Papaver somniferum HOM05D004560 ORTHO05D005540 0.0e+00 1348.2 2276 44.6
HanXRQChr14g0442851 Helianthus annuus HOM05D004560 ORTHO05D005540 0.0e+00 1329.7 2140 46.2
PSO170G6095 Papaver somniferum HOM05D004560 ORTHO05D005540 0.0e+00 1310.4 2180 45.4
Oeu003960.1 Olea europaea HOM05D004560 ORTHO05D005540 0.0e+00 1228.4 1661 50.8
AT3G50370 Arabidopsis thaliana HOM05D004560 ORTHO05D005540 0.0e+00 1227.6 2149 44.8
AL5G30500 Arabidopsis lyrata HOM05D004560 ORTHO05D005540 0.0e+00 1227.2 2144 43.8
Sp5g11810 Schrenkiella parvula HOM05D004560 ORTHO05D005540 0.0e+00 1223.8 2154 44.8
Aa31LG4G18600 Aethionema arabicum HOM05D004560 ORTHO05D005540 0.0e+00 1201.8 2170 44.8
ATR0753G002 Amborella trichopoda HOM05D004560 ORTHO05D005540 0.0e+00 1193.7 2240 43.7
Migut.N01430 Erythranthe guttata HOM05D004560 ORTHO05D005540 0.0e+00 1169.5 2203 43.5
Carub.0005s1668 Capsella rubella HOM05D004560 ORTHO05D005540 0.0e+00 1165.2 2151 44.1
TAR628G0564 Trochodendron aralioides HOM05D004560 ORTHO05D005540 0.0e+00 1119.4 1038 63.7
Thhalv10010051m.g Eutrema salsugineum HOM05D004560 ORTHO05D005540 0.0e+00 1105.9 2159 40.9
CARHR159850 Cardamine hirsuta HOM05D004560 ORTHO05D005540 0.0e+00 1097.8 2149 42.5
MELO3C007558.2 Cucumis melo HOM05D004560 ORTHO05D005540 1.5e-306 1057.4 1586 49.2
Cpa.g.sc55.157 Carica papaya HOM05D004560 ORTHO05D005540 6.0e-300 1035.4 968 61.7
Actinidia16497 Actinidia chinensis HOM05D004560 ORTHO05D005540 3.1e-272 943.3 848 70.0
Atru.chr10.1634 Acer truncatum HOM05D004560 ORTHO05D005540 7.5e-258 895.6 1025 56.8
Cpa.g.sc55.158 Carica papaya HOM05D004560 ORTHO05D005540 1.5e-242 844.7 1030 57.9
BcaB01g00621 Brassica carinata HOM05D004560 ORTHO05D005540 2.9e-233 813.9 2143 37.8
SEGI_38337 Sequoiadendron giganteum HOM05D004560 ORTHO05D005540 2.9e-233 813.9 2325 37.5
Zm00001eb019260 Zea mays HOM05D004560 ORTHO05D005540 3.6e-228 797.0 2109 38.6
A09p43370 Brassica napus HOM05D004560 ORTHO05D005540 3.1e-211 740.7 2149 36.8
Actinidia16495 Actinidia chinensis HOM05D004560 ORTHO05D005540 9.0e-211 739.2 485 81.6
BcaC07g39495 Brassica carinata HOM05D004560 ORTHO05D005540 1.5e-210 738.4 2146 36.7
C08p25410 Brassica napus HOM05D004560 ORTHO05D005540 1.5e-210 738.4 2146 36.7
BraA09t39806Z Brassica rapa HOM05D004560 ORTHO05D005540 1.7e-209 734.9 2147 36.6
TAR628G1123 Trochodendron aralioides HOM05D004560 ORTHO05D005540 1.7e-209 734.9 943 53.4
BolC8t50162H Brassica oleracea HOM05D004560 ORTHO05D005540 7.8e-207 726.1 2184 36.2
CDE04G1181 Ceratophyllum demersum HOM05D004560 ORTHO05D005540 9.7e-173 612.8 1706 37.9
CDE08G0981 Ceratophyllum demersum HOM05D004560 ORTHO05D005540 2.6e-170 604.7 1559 34.7
HPP92_004113 Vanilla planifolia HOM05D004560 ORTHO05D005540 5.0e-161 573.9 2126 32.7
unitig_736.g22379 Utricularia gibba HOM05D004560 ORTHO05D005540 5.9e-154 550.4 1320 40.8
Dinv39858 Davidia involucrata HOM05D004560 ORTHO05D005540 7.0e-147 526.9 418 67.9
Haze_15410 Corylus avellana HOM05D004560 ORTHO05D005540 3.5e-138 498.0 339 81.1
unitig_736.g22380 Utricularia gibba HOM05D004560 ORTHO05D005540 9.5e-120 436.8 711 42.8
Os03g0395600 Oryza sativa ssp. japonica HOM05D004560 ORTHO05D005540 1.2e-109 403.3 540 49.3
SHI34246 Sapria himalayana HOM05D004560 ORTHO05D005540 1.1e-104 386.7 1726 31.9
PGSC0003DMG400004537 Solanum tuberosum HOM05D004560 ORTHO05D005540 2.9e-100 372.1 223 81.6
HPP92_004075 Vanilla planifolia HOM05D004560 ORTHO05D005540 3.2e-99 368.6 999 33.9
Mapoly0121s0051 Marchantia polymorpha HOM05D004560 ORTHO05D005540 1.9e-96 359.4 2435 28.2
FAN04G2556 Fragaria x ananassa HOM05D004560 ORTHO05D005540 1.5e-93 349.7 470 51.3
unitig_899.g14936 Utricularia gibba HOM05D004560 ORTHO05D005540 3.4e-93 348.6 976 34.3
Pp3c7_3230 Physcomitrium patens HOM05D004560 ORTHO05D005540 5.8e-77 294.7 2316 29.4
Pp3c11_18520 Physcomitrium patens HOM05D004560 ORTHO05D005540 8.7e-65 254.2 1107 31.3
Sed0026550 Sechium edule HOM05D004560 ORTHO05D005540 8.2e-63 247.7 505 41.6
Psat2g096520 Pisum sativum HOM05D004560 ORTHO05D005540 3.8e-60 238.8 156 75.6
SHI34241 Sapria himalayana HOM05D000030 ORTHO05D000009 7.2e-59 234.6 335 45.7
Pp3c11_18522 Physcomitrium patens HOM05D004560 ORTHO05D005540 1.4e-57 230.3 1086 30.7
unitig_899.g14935 Utricularia gibba HOM05D004560 ORTHO05D005540 7.4e-48 198.0 439 39.6
Actinidia16496 Actinidia chinensis HOM05D004560 ORTHO05D005540 1.5e-45 190.3 265 49.4
HPP92_004077 Vanilla planifolia HOM05D004560 ORTHO05D005540 8.5e-44 184.5 942 32.0
CDE08G0295 Ceratophyllum demersum HOM05D006253 ORTHO05D007666 3.7e-39 169.1 483 31.7
Psat3g009840 Pisum sativum HOM05D004560 ORTHO05D005540 1.1e-35 157.5 213 46.9
SMO340G0113 Selaginella moellendorffii HOM05D004560 ORTHO05D005540 5.5e-35 155.2 2045 25.4
Psat3g009720 Pisum sativum HOM05D003492 ORTHO05D005540 1.8e-33 150.2 167 53.3
AagrBONN_evm.TU.Sc2ySwM_228.1624 Anthoceros agrestis HOM05D004560 ORTHO05D005540 4.0e-33 149.1 1144 26.5
Rhsim08G0115000 Rhododendron simsii HOM05D000030 ORTHO05D000009 4.5e-29 135.6 75 86.7
RcHm_v2.0_Chr2g0145051 Rosa chinensis HOM05D004560 ORTHO05D005540 5.5e-27 128.6 176 51.1
RcHm_v2.0_Chr4g0416641 Rosa chinensis HOM05D004560 ORTHO05D005540 5.5e-27 128.6 176 51.1
unitig_899.g14937 Utricularia gibba HOM05D004560 ORTHO05D005540 8.8e-25 121.3 316 33.5
EL10Ac9g22827 Beta vulgaris HOM05D004560 ORTHO05D005540 2.0e-21 110.2 163 44.8
unitig_899.g14938 Utricularia gibba HOM05D004560 ORTHO05D005540 5.7e-16 92.0 86 59.3
Lsat_1_v5_gn_3_15640 Lactuca sativa HOM05D003881 ORTHO05D004343 1.3e-12 80.9 112 48.2
SHI34242 Sapria himalayana HOM05D004560 ORTHO05D005540 4.7e-10 72.4 85 49.4
CBR_g34112 Chara braunii HOM05D000019 ORTHO05D137378 5.8e-08 65.5 58 55.2


User provided reference genes

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