Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0033815 Camellia sinensis var. sinensis HOM05D003373 ORTHO05D004419 2.3e-152 542.3 310 100.0
Actinidia04028 Actinidia chinensis HOM05D003373 ORTHO05D004419 2.4e-112 409.5 315 76.2
CSS0018229 Camellia sinensis var. sinensis HOM05D003373 ORTHO05D004419 2.0e-103 379.8 320 71.9
Dinv24947 Davidia involucrata HOM05D003373 ORTHO05D004419 4.6e-100 368.6 317 68.5
Rhsim12G0129000 Rhododendron simsii HOM05D003373 ORTHO05D004419 1.7e-97 360.1 324 67.0
Dinv34191 Davidia involucrata HOM05D003373 ORTHO05D004419 9.1e-96 354.4 316 72.2
GSVIVG01020088001 Vitis vinifera HOM05D003373 ORTHO05D004419 2.8e-89 332.8 314 67.2
Hma1.2p1_1045F.1_g251400 Hydrangea macrophylla HOM05D003373 ORTHO05D004419 7.7e-87 324.7 285 69.5
Manes.05G095400 Manihot esculenta HOM05D003373 ORTHO05D004419 6.5e-86 321.6 287 66.6
Ciclev10031519m.g Citrus clementina HOM05D003373 ORTHO05D004419 1.9e-85 320.1 317 65.9
vmacro16318 Vaccinium macrocarpon HOM05D003373 ORTHO05D004419 2.1e-84 316.6 325 64.0
Actinidia31168 Actinidia chinensis HOM05D003373 ORTHO05D004419 6.7e-83 311.6 200 82.0
Duzib248G1211 Durio zibethinus HOM05D003373 ORTHO05D004419 5.3e-80 302.0 289 68.9
Psat2g126240 Pisum sativum HOM05D003373 ORTHO05D004419 2.2e-78 296.6 294 62.2
Potri.010G034900 Populus trichocarpa HOM05D003373 ORTHO05D004419 2.2e-78 296.6 288 66.0
Medtr5g037960 Medicago truncatula HOM05D003373 ORTHO05D004419 6.5e-78 295.0 286 66.4
Lj2g0024788 Lotus japonicus HOM05D003373 ORTHO05D004419 8.5e-78 294.7 286 65.4
Cfa009067 Carpinus fangiana HOM05D003373 ORTHO05D004419 3.2e-77 292.7 315 59.7
QL03p066330 Quercus lobata HOM05D003373 ORTHO05D004419 3.6e-76 289.3 334 58.4
Atru.chr11.1870 Acer truncatum HOM05D003373 ORTHO05D004419 6.1e-76 288.5 318 64.5
Phvul.002G067800 Phaseolus vulgaris HOM05D003373 ORTHO05D004419 6.1e-76 288.5 287 63.4
Thecc.02G234000 Theobroma cacao HOM05D003373 ORTHO05D004419 6.1e-76 288.5 288 64.9
TWI36G0800 Tripterygium wilfordii HOM05D003373 ORTHO05D004419 1.4e-75 287.3 285 62.5
VMungo1215G0200 Vigna mungo HOM05D003373 ORTHO05D004419 6.7e-75 285.0 286 65.4
Cpa.g.sc5.285 Carica papaya HOM05D003373 ORTHO05D004419 8.8e-75 284.6 286 64.0
MD13G1080700 Malus domestica HOM05D003373 ORTHO05D004419 1.5e-74 283.9 285 61.8
Duzib268G0991 Durio zibethinus HOM05D003373 ORTHO05D004419 2.6e-74 283.1 297 58.9
CiPaw.05G141000 Carya illinoinensis HOM05D003373 ORTHO05D004419 5.7e-74 282.0 288 63.5
CiPaw.06G080000 Carya illinoinensis HOM05D003373 ORTHO05D004419 5.7e-74 282.0 289 63.3
COL.COLO4_36201 Corchorus olitorius HOM05D003373 ORTHO05D004419 3.7e-73 279.3 288 64.6
Oeu043029.1 Olea europaea HOM05D003373 ORTHO05D004419 4.8e-73 278.9 294 62.9
Ca_04701_v3 Cicer arietinum L. HOM05D003373 ORTHO05D004419 2.4e-72 276.6 300 58.0
arahy.Tifrunner.gnm1.ann1.NIK4ZB Arachis hypogaea HOM05D003373 ORTHO05D004419 7.7e-71 271.6 320 56.2
TPR.G31079 Trifolium pratense HOM05D003373 ORTHO05D004419 7.7e-71 271.6 285 64.6
Lsat_1_v5_gn_8_163340 Lactuca sativa HOM05D003373 ORTHO05D004419 1.7e-70 270.4 279 62.7
TAR374G1081 Trochodendron aralioides HOM05D003373 ORTHO05D004419 1.7e-70 270.4 280 66.1
Oeu057174.1 Olea europaea HOM05D003373 ORTHO05D004419 6.5e-70 268.5 286 62.2
TWI18G0023 Tripterygium wilfordii HOM05D003373 ORTHO05D004419 1.1e-69 267.7 303 57.4
Gohir.D05G323100 Gossypium hirsutum HOM05D003373 ORTHO05D004419 2.5e-69 266.5 291 62.9
Gorai.009G346800 Gossypium raimondii HOM05D003373 ORTHO05D004419 2.5e-69 266.5 291 62.9
Gohir.A04G097600 Gossypium hirsutum HOM05D003373 ORTHO05D004419 3.2e-69 266.2 285 57.5
Gohir.A05G320900 Gossypium hirsutum HOM05D003373 ORTHO05D004419 3.2e-69 266.2 292 63.4
arahy.Tifrunner.gnm1.ann1.YF4WKN Arachis hypogaea HOM05D003373 ORTHO05D004419 4.2e-69 265.8 288 59.4
Eucgr.B02587 Eucalyptus grandis HOM05D003373 ORTHO05D004419 5.5e-69 265.4 287 62.7
Sabra10G0029900 Salix brachista HOM05D003373 ORTHO05D004419 9.4e-69 264.6 292 60.6
Aqoxy3G03242 Aquilegia oxysepala HOM05D003373 ORTHO05D004419 1.2e-68 264.2 279 59.9
Glyma.01G041300 Glycine max HOM05D003373 ORTHO05D004419 1.2e-68 264.2 278 61.9
Duzib251G0793 Durio zibethinus HOM05D003373 ORTHO05D004419 2.1e-68 263.5 308 60.7
Glyma.02G022800 Glycine max HOM05D003373 ORTHO05D004419 2.7e-68 263.1 284 59.2
Sabra08G0147700 Salix brachista HOM05D003373 ORTHO05D004419 6.1e-68 261.9 326 56.7
Lalb_Chr04g0256431 Lupinus albus HOM05D003373 ORTHO05D004419 4.0e-67 259.2 285 58.9
Gohir.D04G137300 Gossypium hirsutum HOM05D003373 ORTHO05D004419 2.0e-66 256.9 287 57.5
Nn3g17111 Nelumbo nucifera HOM05D003373 ORTHO05D004419 2.6e-66 256.5 283 55.5
PGR119G0099 Punica granatum HOM05D003373 ORTHO05D004419 1.3e-65 254.2 292 57.9
Lalb_Chr10g0097901 Lupinus albus HOM05D003373 ORTHO05D004419 3.7e-65 252.7 279 60.6
Lj6A795T73 Lonicera japonica HOM05D003373 ORTHO05D004419 4.8e-65 252.3 287 56.1
Cc11_g13620 Coffea canephora HOM05D003373 ORTHO05D004419 8.3e-65 251.5 157 81.5
Nn4g23016 Nelumbo nucifera HOM05D003373 ORTHO05D004419 8.3e-65 251.5 351 49.0
PSO591G0008 Papaver somniferum HOM05D003373 ORTHO05D004419 1.8e-64 250.4 316 56.0
PSO832G2541 Papaver somniferum HOM05D003373 ORTHO05D004419 4.1e-64 249.2 314 55.1
MBI01_g01238_MAGBIO Magnolia biondii HOM05D003373 ORTHO05D004419 1.6e-63 247.3 295 58.0
Potri.008G194200 Populus trichocarpa HOM05D003373 ORTHO05D004419 1.6e-63 247.3 299 57.5
CANSAT35G1086 Cannabis sativa HOM05D003373 ORTHO05D004419 3.5e-63 246.1 295 58.3
FAN17G1936 Fragaria x ananassa HOM05D003373 ORTHO05D004419 3.5e-63 246.1 298 59.1
MD16G1080200 Malus domestica HOM05D003373 ORTHO05D004419 5.9e-63 245.4 286 60.1
RcHm_v2.0_Chr4g0445281 Rosa chinensis HOM05D003373 ORTHO05D004419 1.0e-62 244.6 296 58.4
FvH4_4g35680 Fragaria vesca HOM05D003373 ORTHO05D004419 1.7e-62 243.8 303 57.4
ClCG05G024690 Citrullus lanatus HOM05D003373 ORTHO05D004419 2.3e-62 243.4 317 51.7
FAN07G0752 Fragaria x ananassa HOM05D003373 ORTHO05D004419 2.3e-62 243.4 298 58.7
FAN12G3521 Fragaria x ananassa HOM05D003373 ORTHO05D004419 2.3e-62 243.4 303 57.8
MSTRG.13397 Avicennia marina HOM05D003373 ORTHO05D004419 3.8e-62 242.7 293 52.6
FAN22G0404 Fragaria x ananassa HOM05D003373 ORTHO05D004419 3.8e-62 242.7 303 57.4
DCAR_007126 Daucus carota HOM05D003373 ORTHO05D004419 1.1e-61 241.1 286 55.6
Manes.01G192000 Manihot esculenta HOM05D003373 ORTHO05D004419 5.5e-61 238.8 155 77.4
TAR629G0400 Trochodendron aralioides HOM05D003373 ORTHO05D004419 1.6e-60 237.3 187 68.4
AL1G38400 Arabidopsis lyrata HOM05D003373 ORTHO05D004419 2.8e-60 236.5 282 54.6
EL10Ac6g13134 Beta vulgaris HOM05D003373 ORTHO05D004419 2.8e-60 236.5 289 58.5
DCAR_031055 Daucus carota HOM05D003373 ORTHO05D004419 3.6e-60 236.1 285 54.7
PGR102G0330 Punica granatum HOM05D003373 ORTHO05D004419 3.6e-60 236.1 289 55.4
MSTRG.2363 Avicennia marina HOM05D003373 ORTHO05D004419 8.0e-60 235.0 244 56.1
Gorai.012G121700 Gossypium raimondii HOM05D003373 ORTHO05D004419 8.0e-60 235.0 275 55.3
Aa31LG4G10950 Aethionema arabicum HOM05D003373 ORTHO05D004419 2.3e-59 233.4 309 56.6
MELO3C012054.2 Cucumis melo HOM05D003373 ORTHO05D004419 2.3e-59 233.4 351 46.2
Lsat_1_v5_gn_4_9400 Lactuca sativa HOM05D003373 ORTHO05D004419 5.2e-59 232.3 284 56.3
AT1G27090 Arabidopsis thaliana HOM05D003373 ORTHO05D004419 2.6e-58 229.9 283 56.2
ECA234G3640 Erigeron canadensis HOM05D003373 ORTHO05D004419 3.4e-58 229.6 280 56.4
Sc11g0001580 Simmondsia chinensis HOM05D003373 ORTHO05D004419 5.7e-58 228.8 281 56.9
CDE08G0466 Ceratophyllum demersum HOM05D003373 ORTHO05D004419 7.5e-58 228.4 298 49.7
CsaV3_5G032210 Cucumis sativus L. HOM05D003373 ORTHO05D004419 7.5e-58 228.4 313 53.0
Haze_12097 Corylus avellana HOM05D003373 ORTHO05D004419 9.8e-58 228.0 156 75.0
Sed0023513 Sechium edule HOM05D003373 ORTHO05D004419 1.4e-56 224.2 246 54.9
unitig_62.g23682 Utricularia gibba HOM05D003373 ORTHO05D004419 1.8e-56 223.8 308 50.0
Cc00_g35170 Coffea canephora HOM05D003373 ORTHO05D004419 3.1e-56 223.0 257 56.8
Hund25279 Selenicereus undatus HOM05D003373 ORTHO05D004419 5.4e-56 222.2 286 55.9
Carub.0001s2388 Capsella rubella HOM05D003373 ORTHO05D004419 9.2e-56 221.5 283 54.1
AUR62026278 Chenopodium quinoa HOM05D003373 ORTHO05D004419 1.6e-55 220.7 287 49.8
THA.LOC104822090 Tarenaya hassleriana HOM05D003373 ORTHO05D004419 2.0e-55 220.3 247 55.9
Thhalv10007745m.g Eutrema salsugineum HOM05D003373 ORTHO05D004419 7.8e-55 218.4 287 52.6
Migut.E00120 Erythranthe guttata HOM05D003373 ORTHO05D004419 1.3e-54 217.6 282 55.0
HanXRQChr03g0092821 Helianthus annuus HOM05D003373 ORTHO05D004419 1.7e-54 217.2 288 55.2
SGA_v2.0_scaffold63G21675 Striga asiatica HOM05D003373 ORTHO05D004419 2.3e-54 216.9 293 52.6
HanXRQChr17g0570411 Helianthus annuus HOM05D003373 ORTHO05D004419 2.9e-54 216.5 289 54.3
unitig_52.g17172 Utricularia gibba HOM05D003373 ORTHO05D004419 2.8e-52 209.9 228 54.8
Migut.L01354 Erythranthe guttata HOM05D003373 ORTHO05D004419 1.4e-51 207.6 291 45.0
Lj3A1043T79 Lonicera japonica HOM05D003373 ORTHO05D004419 5.2e-51 205.7 165 67.9
CDE09G0772 Ceratophyllum demersum HOM05D003373 ORTHO05D004419 1.7e-49 200.7 154 67.5
BcaB07g32385 Brassica carinata HOM05D003373 ORTHO05D004419 3.7e-49 199.5 284 51.1
Solyc01g010440.4 Solanum lycopersicum HOM05D003373 ORTHO05D004419 3.7e-49 199.5 333 47.7
CARHR024810 Cardamine hirsuta HOM05D003373 ORTHO05D004419 4.9e-49 199.1 284 53.2
Sopen01g006060 Solanum pennellii HOM05D003373 ORTHO05D004419 4.9e-49 199.1 333 47.7
PGSC0003DMG400007711 Solanum tuberosum HOM05D003373 ORTHO05D004419 4.9e-49 199.1 305 46.2
SGA_v2.0_scaffold87G26974 Striga asiatica HOM05D003373 ORTHO05D004419 8.3e-49 198.4 236 51.3
A09p40480 Brassica napus HOM05D003373 ORTHO05D004419 5.4e-48 195.7 284 49.3
Ah.02g131980 Amaranthus hybridus HOM05D003373 ORTHO05D004419 1.2e-47 194.5 313 51.8
Sp1g21690 Schrenkiella parvula HOM05D003373 ORTHO05D004419 2.7e-47 193.4 292 47.3
Glyma.01G122300 Glycine max HOM05D003373 ORTHO05D004419 4.6e-47 192.6 147 66.7
BolC8t49893H Brassica oleracea HOM05D003373 ORTHO05D004419 6.0e-47 192.2 293 44.0
BolC5t31088H Brassica oleracea HOM05D003373 ORTHO05D004419 1.0e-46 191.4 294 45.2
BraA09t39545Z Brassica rapa HOM05D003373 ORTHO05D006520 1.3e-46 191.0 285 49.1
BcaC07g39253 Brassica carinata HOM05D003373 ORTHO05D004419 3.0e-46 189.9 293 43.7
Glyma.01G047300 Glycine max HOM05D003373 ORTHO05D004419 3.9e-46 189.5 147 66.7
HPP92_019651 Vanilla planifolia HOM05D003373 ORTHO05D004419 3.9e-46 189.5 291 49.1
C05p23700 Brassica napus HOM05D003373 ORTHO05D004419 5.0e-46 189.1 296 44.9
BraA08t34708Z Brassica rapa HOM05D003373 ORTHO05D004419 1.9e-45 187.2 282 47.9
A08p27730 Brassica napus HOM05D003373 ORTHO05D004419 2.5e-45 186.8 282 47.5
ATR0665G354 Amborella trichopoda HOM05D003373 ORTHO05D004419 5.6e-45 185.7 303 42.6
PGSC0003DMG400017635 Solanum tuberosum HOM05D003373 ORTHO05D004419 9.5e-45 184.9 314 46.8
SalBow2G1107 Salvia bowleyana HOM05D003373 ORTHO05D004419 1.2e-44 184.5 163 58.9
BcaB03g11980 Brassica carinata HOM05D003373 ORTHO05D004419 1.8e-43 180.6 292 42.5
Nitab4.5_0003297g0010 Nicotiana tabacum HOM05D003373 ORTHO05D004419 2.0e-42 177.2 297 46.1
AUR62026466 Chenopodium quinoa HOM05D003373 ORTHO05D004419 4.4e-42 176.0 242 50.4
Lalb_Chr17g0340231 Lupinus albus HOM05D003373 ORTHO05D004419 1.7e-41 174.1 157 59.9
C08p22560 Brassica napus HOM05D003373 ORTHO05D004419 2.9e-41 173.3 280 42.9
Sopen05g002860 Solanum pennellii HOM05D003373 ORTHO05D004419 1.9e-40 170.6 319 44.5
PSO017G0861 Papaver somniferum HOM05D003373 ORTHO05D004419 4.1e-40 169.5 309 44.3
PSO478G2017 Papaver somniferum HOM05D003373 ORTHO05D004419 5.4e-40 169.1 307 45.3
Zm00001eb217180 Zea mays HOM05D003373 ORTHO05D004419 2.5e-37 160.2 297 42.4
TAR622G0335 Trochodendron aralioides HOM05D003373 ORTHO05D004419 7.3e-37 158.7 203 51.7
Os03g0688200 Oryza sativa ssp. japonica HOM05D003373 ORTHO05D004419 1.6e-36 157.5 304 41.1
Nitab4.5_0008971g0050 Nicotiana tabacum HOM05D003373 ORTHO05D004419 3.1e-35 153.3 293 44.4
SGA_v2.0_scaffold467G52045 Striga asiatica HOM05D003373 ORTHO05D004419 4.0e-35 152.9 113 67.3
Nitab4.5_0002382g0020 Nicotiana tabacum HOM05D003373 ORTHO05D004419 7.5e-34 148.7 294 44.6
Zm00001eb053410 Zea mays HOM05D003373 ORTHO05D004419 1.7e-33 147.5 245 41.6
Haze_17061 Corylus avellana HOM05D003373 ORTHO05D004419 4.1e-32 142.9 81 82.7
Nitab4.5_0000710g0020 Nicotiana tabacum HOM05D003373 ORTHO05D004419 7.1e-32 142.1 299 45.8
SGA_v2.0_scaffold166G38286 Striga asiatica HOM05D003373 ORTHO05D004419 1.6e-31 141.0 183 46.4
Prupe.1G265800 Prunus persica HOM05D003373 ORTHO05D004419 3.5e-31 139.8 182 59.9
Haze_04255 Corylus avellana HOM05D003373 ORTHO05D004419 1.0e-30 138.3 94 69.1
Pp3c25_8180 Physcomitrium patens HOM05D003373 ORTHO05D004419 3.9e-30 136.3 258 36.4
Pp3c25_8182 Physcomitrium patens HOM05D003373 ORTHO05D004419 3.9e-30 136.3 258 36.4
AagrBONN_evm.TU.Sc2ySwM_228.3903 Anthoceros agrestis HOM05D003373 ORTHO05D004419 3.3e-29 133.3 169 45.6
Pp3c16_590 Physcomitrium patens HOM05D003373 ORTHO05D004419 3.3e-29 133.3 230 37.0
Peaxi162Scf00209g00714 Petunia axillaris HOM05D003373 ORTHO05D004419 7.3e-29 132.1 184 45.1
Nitab4.5_0003732g0020 Nicotiana tabacum HOM05D003373 ORTHO05D004419 1.2e-28 131.3 231 40.7
SalBow8G0803 Salvia bowleyana HOM05D003373 ORTHO05D004419 1.1e-27 128.3 95 64.2
SEGI_00885 Sequoiadendron giganteum HOM05D003373 ORTHO05D004419 1.1e-27 128.3 336 31.8
SMO012G0008 Selaginella moellendorffii HOM05D003373 ORTHO05D004419 2.9e-25 120.2 177 44.1
Mapoly0083s0034 Marchantia polymorpha HOM05D003373 ORTHO05D004419 1.9e-24 117.5 172 39.0
SMO141G0251 Selaginella moellendorffii HOM05D003373 ORTHO05D004419 3.2e-24 116.7 132 49.2
Peaxi162Scf00026g00225 Petunia axillaris HOM05D003373 ORTHO05D004419 7.1e-24 115.5 240 40.0
SEGI_31454 Sequoiadendron giganteum HOM05D003373 ORTHO05D004419 7.1e-24 115.5 234 33.8
CBR_g4061 Chara braunii HOM05D003373 ORTHO05D004419 4.3e-21 106.3 119 42.0
C02p06900 Brassica napus HOM05D003373 ORTHO05D004419 7.3e-21 105.5 84 60.7
C02p07020 Brassica napus HOM05D003373 ORTHO05D004419 7.3e-21 105.5 84 60.7
Manes.12G071300 Manihot esculenta HOM05D003373 ORTHO05D004419 1.2e-20 104.8 69 75.4
Solyc05g006900.2 Solanum lycopersicum HOM05D003373 ORTHO05D004419 6.9e-19 99.0 92 55.4
HPP92_019602 Vanilla planifolia HOM05D003373 ORTHO05D004419 4.4e-18 96.3 240 40.4
Lsat_1_v5_gn_8_36201 Lactuca sativa HOM05D003373 ORTHO05D004419 8.4e-17 92.0 118 46.6
SalBow3G2377 Salvia bowleyana HOM05D003373 ORTHO05D004419 1.5e-13 81.3 70 61.4
BcaB03g14104 Brassica carinata HOM05D003373 ORTHO05D004419 1.9e-13 80.9 246 33.3
SalBow8G0677 Salvia bowleyana HOM05D003373 ORTHO05D004419 3.3e-13 80.1 70 61.4
VMungo0251G2436 Vigna mungo HOM05D006362 ORTHO05D008295 4.0e-11 73.2 49 77.6
Hma1.2p1_0265F.1_g106500 Hydrangea macrophylla HOM05D003373 ORTHO05D048345 1.2e-10 71.6 88 51.1
Lj3A1043T80 Lonicera japonica HOM05D003373 ORTHO05D048345 2.6e-10 70.5 145 53.1
A07p13300 Brassica napus HOM05D003373 ORTHO05D041218 1.3e-09 68.2 107 43.9
BraA07t29101Z Brassica rapa HOM05D003373 ORTHO05D041218 1.3e-09 68.2 107 43.9
BcaC03g15848 Brassica carinata HOM05D007458 ORTHO05D009533 2.9e-09 67.0 67 55.2
SalBow8G0196 Salvia bowleyana HOM05D003373 ORTHO05D004419 1.0e-06 58.5 58 63.8


User provided reference genes

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