Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0033809 Camellia sinensis var. sinensis HOM05D005367 ORTHO05D006328 9.4e-113 410.6 274 100.0
CSS0040093 Camellia sinensis var. sinensis HOM05D005367 ORTHO05D006328 3.5e-99 365.5 274 82.5
Dinv43805 Davidia involucrata HOM05D005367 ORTHO05D006328 2.0e-54 216.9 176 65.3
Actinidia20916 Actinidia chinensis HOM05D005367 ORTHO05D006328 1.1e-52 211.1 169 69.2
vmacro13291 Vaccinium macrocarpon HOM05D005367 ORTHO05D006328 1.6e-51 207.2 164 65.9
Hma1.2p1_0001F.1_g001380 Hydrangea macrophylla HOM05D005367 ORTHO05D006328 2.8e-48 196.4 175 62.9
Haze_15487 Corylus avellana HOM05D005367 ORTHO05D006328 2.0e-46 190.3 176 59.7
Cfa003939 Carpinus fangiana HOM05D005367 ORTHO05D006328 1.7e-45 187.2 180 58.3
GSVIVG01026893001 Vitis vinifera HOM05D005367 ORTHO05D006328 2.4e-44 183.3 160 60.6
Prupe.2G167900 Prunus persica HOM05D005367 ORTHO05D006328 2.3e-42 176.8 160 58.1
CiPaw.02G029900 Carya illinoinensis HOM05D005367 ORTHO05D006328 4.3e-41 172.6 178 53.9
TWI14G0016 Tripterygium wilfordii HOM05D005367 ORTHO05D006328 4.3e-41 172.6 175 51.4
Lj9A582T87 Lonicera japonica HOM05D005367 ORTHO05D006328 1.3e-40 171.0 167 55.7
TAR375G0799 Trochodendron aralioides HOM05D005367 ORTHO05D006328 2.8e-40 169.9 168 58.3
Nn1g01501 Nelumbo nucifera HOM05D005367 ORTHO05D006328 3.7e-40 169.5 174 53.4
Cpa.g.sc18.245 Carica papaya HOM05D005367 ORTHO05D006328 8.1e-40 168.3 176 53.4
Oeu056369.1 Olea europaea HOM05D005367 ORTHO05D006328 8.1e-40 168.3 156 58.3
QL08p049031 Quercus lobata HOM05D005367 ORTHO05D006328 2.4e-39 166.8 167 56.3
Nitab4.5_0001702g0150 Nicotiana tabacum HOM05D005367 ORTHO05D006328 4.0e-39 166.0 166 52.4
SGA_v2.0_scaffold11G05663 Striga asiatica HOM05D000368 ORTHO05D006328 2.0e-38 163.7 163 56.4
SalBow3G2019 Salvia bowleyana HOM05D005367 ORTHO05D006328 3.4e-38 162.9 163 55.8
Potri.014G082600 Populus trichocarpa HOM05D005367 ORTHO05D006328 4.5e-38 162.5 166 49.4
Duzib133G0249 Durio zibethinus HOM05D005367 ORTHO05D006328 1.7e-37 160.6 153 58.2
RcHm_v2.0_Chr1g0355051 Rosa chinensis HOM05D005367 ORTHO05D006328 1.7e-37 160.6 160 51.2
Ciclev10021865m.g Citrus clementina HOM05D005367 ORTHO05D006328 2.2e-37 160.2 158 50.6
Potri.002G158500 Populus trichocarpa HOM05D005367 ORTHO05D006328 2.9e-37 159.8 166 50.0
COL.COLO4_12698 Corchorus olitorius HOM05D005367 ORTHO05D006328 3.8e-37 159.5 182 50.5
Cc02_g37850 Coffea canephora HOM05D005367 ORTHO05D006328 4.9e-37 159.1 170 50.6
Glyma.18G231900 Glycine max HOM05D005367 ORTHO05D006328 4.9e-37 159.1 171 50.3
Eucgr.D02282 Eucalyptus grandis HOM05D005367 ORTHO05D006328 1.9e-36 157.1 165 52.1
Manes.05G036200 Manihot esculenta HOM05D005367 ORTHO05D006328 1.9e-36 157.1 169 52.7
Manes.01G258500 Manihot esculenta HOM05D005367 ORTHO05D006328 2.4e-36 156.8 173 49.7
ClCG06G003800 Citrullus lanatus HOM05D005367 ORTHO05D006328 4.2e-36 156.0 182 46.2
PGR031G3282 Punica granatum HOM05D005367 ORTHO05D006328 7.1e-36 155.2 164 52.4
Nitab4.5_0008050g0010 Nicotiana tabacum HOM05D005367 ORTHO05D006328 9.3e-36 154.8 163 50.9
TAR636G2389 Trochodendron aralioides HOM05D003133 ORTHO05D003642 9.3e-36 154.8 177 49.7
Lalb_Chr24g0401631 Lupinus albus HOM05D005367 ORTHO05D006328 1.2e-35 154.5 162 46.9
Nn6g33454 Nelumbo nucifera HOM05D005367 ORTHO05D006328 1.6e-35 154.1 183 50.3
MSTRG.20826 Avicennia marina HOM05D005367 ORTHO05D006328 2.1e-35 153.7 159 50.9
Lalb_Chr01g0011531 Lupinus albus HOM05D005367 ORTHO05D006328 4.6e-35 152.5 162 46.3
MD07G1139200 Malus domestica HOM05D005367 ORTHO05D006328 4.6e-35 152.5 164 51.8
TWI59G0064 Tripterygium wilfordii HOM05D005367 ORTHO05D006328 4.6e-35 152.5 177 50.3
Gohir.D08G152300 Gossypium hirsutum HOM05D005367 ORTHO05D006328 7.9e-35 151.8 168 48.8
Gohir.D11G092400 Gossypium hirsutum HOM05D005367 ORTHO05D006328 1.8e-34 150.6 170 52.4
Gorai.007G098700 Gossypium raimondii HOM05D005367 ORTHO05D006328 2.3e-34 150.2 170 52.4
Peaxi162Scf00191g01425 Petunia axillaris HOM05D005367 ORTHO05D006328 2.3e-34 150.2 159 52.8
Gohir.A11G088100 Gossypium hirsutum HOM05D005367 ORTHO05D006328 3.0e-34 149.8 170 52.4
PGSC0003DMG400021656 Solanum tuberosum HOM05D005367 ORTHO05D006328 3.0e-34 149.8 175 49.1
Gorai.004G158200 Gossypium raimondii HOM05D005367 ORTHO05D006328 5.1e-34 149.1 168 48.2
MD01G1057500 Malus domestica HOM05D005367 ORTHO05D006328 5.1e-34 149.1 163 50.9
Sopen05g028210 Solanum pennellii HOM05D005367 ORTHO05D006328 6.7e-34 148.7 175 50.9
Thecc.01G360700 Theobroma cacao HOM05D005367 ORTHO05D006328 6.7e-34 148.7 174 50.0
Migut.B01742 Erythranthe guttata HOM05D005367 ORTHO05D006328 8.7e-34 148.3 169 52.1
Eucgr.E00158 Eucalyptus grandis HOM05D005367 ORTHO05D006328 8.7e-34 148.3 162 51.2
HanXRQChr16g0522831 Helianthus annuus HOM05D005367 ORTHO05D006328 8.7e-34 148.3 177 47.5
Lsat_1_v5_gn_4_36280 Lactuca sativa HOM05D005367 ORTHO05D006328 1.1e-33 147.9 166 48.8
Solyc05g049880.3 Solanum lycopersicum HOM05D005367 ORTHO05D006328 1.1e-33 147.9 175 50.9
Atru.chr5.466 Acer truncatum HOM05D005367 ORTHO05D006328 1.5e-33 147.5 164 45.7
FAN03G1221 Fragaria x ananassa HOM05D005367 ORTHO05D006328 1.9e-33 147.1 157 49.0
MELO3C021217.2 Cucumis melo HOM05D005367 ORTHO05D006328 4.3e-33 146.0 174 44.8
FAN10G0042 Fragaria x ananassa HOM05D005367 ORTHO05D006328 5.6e-33 145.6 157 48.4
Sc01g0003360 Simmondsia chinensis HOM05D005367 ORTHO05D006328 9.6e-33 144.8 173 47.4
Gohir.A08G130800 Gossypium hirsutum HOM05D005367 ORTHO05D006328 1.6e-32 144.1 160 48.8
FAN01G2456 Fragaria x ananassa HOM05D005367 ORTHO05D006328 2.1e-32 143.7 157 47.8
PGR042G0868 Punica granatum HOM05D005367 ORTHO05D006328 3.7e-32 142.9 180 47.2
FvH4_7g14150 Fragaria vesca HOM05D005367 ORTHO05D006328 8.2e-32 141.7 157 47.8
CsaV3_6G000470 Cucumis sativus L. HOM05D005367 ORTHO05D006328 1.1e-31 141.4 174 43.1
FAN06G0563 Fragaria x ananassa HOM05D005367 ORTHO05D006328 1.1e-31 141.4 157 47.8
RcHm_v2.0_Chr1g0354801 Rosa chinensis HOM05D005367 ORTHO05D006328 1.1e-31 141.4 157 47.1
Ca_07909_v3 Cicer arietinum L. HOM05D005367 ORTHO05D006328 1.8e-31 140.6 154 46.8
Sp1g00570 Schrenkiella parvula HOM05D005367 ORTHO05D006328 2.4e-31 140.2 163 46.0
arahy.Tifrunner.gnm1.ann1.D8DQXR Arachis hypogaea HOM05D005367 ORTHO05D006328 4.0e-31 139.4 165 43.0
arahy.Tifrunner.gnm1.ann1.G5US7K Arachis hypogaea HOM05D005367 ORTHO05D006328 6.9e-31 138.7 165 43.0
ECA234G3275 Erigeron canadensis HOM05D005367 ORTHO05D006328 1.0e-29 134.8 160 48.8
Sed0017642 Sechium edule HOM05D005367 ORTHO05D006328 1.0e-29 134.8 161 46.0
TPR.G37815 Trifolium pratense HOM05D005367 ORTHO05D006328 2.9e-29 133.3 148 46.6
unitig_61.g26388 Utricularia gibba HOM05D005367 ORTHO05D006328 2.9e-29 133.3 157 47.1
Atru.chr1.441 Acer truncatum HOM05D005367 ORTHO05D006328 3.8e-29 132.9 170 45.9
Lj1g0004821 Lotus japonicus HOM05D005367 ORTHO05D006328 6.5e-29 132.1 160 45.6
Manes.06G148200 Manihot esculenta HOM05D005367 ORTHO05D006328 6.5e-29 132.1 167 44.9
THA.LOC104801446 Tarenaya hassleriana HOM05D005367 ORTHO05D006328 6.5e-29 132.1 170 42.9
Psat3g109400 Pisum sativum HOM05D005367 ORTHO05D006328 1.4e-28 131.0 152 44.1
Phvul.008G065800 Phaseolus vulgaris HOM05D005367 ORTHO05D006328 5.5e-28 129.0 156 42.9
Hund16930 Selenicereus undatus HOM05D005367 ORTHO05D006328 7.1e-28 128.6 165 44.2
Duzib205G1257 Durio zibethinus HOM05D005367 ORTHO05D006328 9.3e-28 128.3 171 45.6
CANSAT56G3377 Cannabis sativa HOM05D005367 ORTHO05D006328 1.6e-27 127.5 162 43.8
Atru.chr1.440 Acer truncatum HOM05D005367 ORTHO05D006328 2.1e-27 127.1 164 43.9
EL10Ac1g00429 Beta vulgaris HOM05D005367 ORTHO05D006328 1.3e-26 124.4 158 44.9
VMungo1383G2792 Vigna mungo HOM05D005367 ORTHO05D006328 1.3e-26 124.4 163 41.7
RcHm_v2.0_Chr1g0377581 Rosa chinensis HOM05D005367 ORTHO05D006328 1.8e-26 124.0 159 47.2
PSO478G0766 Papaver somniferum HOM05D005367 ORTHO05D006328 2.3e-26 123.6 176 42.6
PSO782G1827 Papaver somniferum HOM05D005367 ORTHO05D006328 2.3e-26 123.6 174 43.7
Aqoxy7G00339 Aquilegia oxysepala HOM05D005367 ORTHO05D006328 3.0e-26 123.2 147 46.9
Medtr7g077380 Medicago truncatula HOM05D005367 ORTHO05D006328 5.1e-26 122.5 152 42.8
FAN10G3657 Fragaria x ananassa HOM05D005367 ORTHO05D006328 1.5e-25 120.9 165 44.8
C08p53830 Brassica napus HOM05D006991 ORTHO05D009188 2.5e-25 120.2 160 42.5
BolC8t52897H Brassica oleracea HOM05D000368 ORTHO05D000289 2.5e-25 120.2 160 42.5
QL09p013904 Quercus lobata HOM05D005367 ORTHO05D006328 3.3e-25 119.8 171 42.7
Ciclev10006075m.g Citrus clementina HOM05D005367 ORTHO05D006328 4.3e-25 119.4 153 43.1
BraA09t42260Z Brassica rapa HOM05D005367 ORTHO05D006328 5.7e-25 119.0 167 39.5
FAN10G4254 Fragaria x ananassa HOM05D005367 ORTHO05D006328 9.7e-25 118.2 174 42.5
AL1G10610 Arabidopsis lyrata HOM05D005367 ORTHO05D006328 1.3e-24 117.9 162 42.0
FvH4_7g29600 Fragaria vesca HOM05D005367 ORTHO05D006328 2.2e-24 117.1 174 42.0
Thhalv10008538m.g Eutrema salsugineum HOM05D005367 ORTHO05D006328 6.3e-24 115.5 163 39.9
Sabra14G0059900 Salix brachista HOM05D005367 ORTHO05D006328 8.2e-24 115.2 213 34.7
Carub.0001s0048 Capsella rubella HOM05D005367 ORTHO05D006328 1.1e-23 114.8 164 40.9
Ah.05g180710 Amaranthus hybridus HOM05D005367 ORTHO05D006328 1.4e-23 114.4 152 42.8
COL.COLO4_14330 Corchorus olitorius HOM05D005367 ORTHO05D006328 2.4e-23 113.6 174 40.2
MD01G1202200 Malus domestica HOM05D005367 ORTHO05D006328 2.4e-23 113.6 172 40.1
AUR62004342 Chenopodium quinoa HOM05D005367 ORTHO05D006328 9.0e-23 111.7 141 44.0
vmacro06668 Vaccinium macrocarpon HOM05D005367 ORTHO05D006328 9.0e-23 111.7 179 40.2
AT1G01730 Arabidopsis thaliana HOM05D005367 ORTHO05D006328 1.3e-21 107.8 162 38.9
DCAR_010300 Daucus carota HOM05D005367 ORTHO05D006328 3.8e-21 106.3 151 41.1
CSS0041755 Camellia sinensis var. sinensis HOM05D005367 ORTHO05D006328 3.2e-20 103.2 145 77.2
VMungo1383G2823 Vigna mungo HOM05D005367 ORTHO05D006328 3.2e-20 103.2 167 36.5
FAN10G0871 Fragaria x ananassa HOM05D005367 ORTHO05D006328 7.2e-20 102.1 88 56.8
FAN10G3879 Fragaria x ananassa HOM05D005367 ORTHO05D006328 2.7e-19 100.1 88 55.7
HPP92_022052 Vanilla planifolia HOM05D005367 ORTHO05D006328 1.8e-18 97.4 163 36.2
HPP92_027620 Vanilla planifolia HOM05D005367 ORTHO05D006328 1.8e-18 97.4 163 36.2
DCAR_000242 Daucus carota HOM05D005367 ORTHO05D006328 2.3e-18 97.1 111 49.5
FAN03G1577 Fragaria x ananassa HOM05D005367 ORTHO05D006328 3.0e-18 96.7 146 41.1
MBI17_g24635_MAGBIO Magnolia biondii HOM05D005367 ORTHO05D006328 1.5e-17 94.4 188 30.9
FAN28G3009 Fragaria x ananassa HOM05D005367 ORTHO05D006328 3.3e-17 93.2 84 54.8
Actinidia34119 Actinidia chinensis HOM05D005367 ORTHO05D006328 1.3e-16 91.3 145 37.2
FAN10G2377 Fragaria x ananassa HOM05D005367 ORTHO05D006328 1.3e-16 91.3 82 53.7
Rhsim03G0187100 Rhododendron simsii HOM05D005367 ORTHO05D006328 1.3e-16 91.3 186 36.0
Dinv35219 Davidia involucrata HOM05D005367 ORTHO05D006328 2.4e-15 87.0 158 39.9
Potri.015G145000 Populus trichocarpa HOM05D005367 ORTHO05D006328 6.9e-15 85.5 168 36.3
FAN10G1555 Fragaria x ananassa HOM05D005367 ORTHO05D006328 2.0e-14 84.0 103 42.7
FAN06G3705 Fragaria x ananassa HOM05D005367 ORTHO05D006328 5.0e-13 79.3 174 34.5
FAN06G4288 Fragaria x ananassa HOM05D005367 ORTHO05D006328 5.0e-13 79.3 174 34.5
Prupe.2G295600 Prunus persica HOM05D005367 ORTHO05D006328 8.5e-13 78.6 115 41.7
Aa31LG1G11100 Aethionema arabicum HOM05D005367 ORTHO05D006328 2.5e-12 77.0 54 64.8
Sabra02G0126000 Salix brachista HOM05D005367 ORTHO05D006328 1.2e-11 74.7 150 35.3
AUR62022549 Chenopodium quinoa HOM05D005367 ORTHO05D006328 2.6e-09 67.0 113 38.1
MD01G1056800 Malus domestica HOM05D005367 ORTHO05D006328 7.4e-09 65.5 96 44.8
AUR62022543 Chenopodium quinoa HOM05D000713 ORTHO05D000547 9.7e-09 65.1 71 49.3
Os04g0556900 Oryza sativa ssp. japonica HOM05D005367 ORTHO05D006328 9.7e-09 65.1 171 30.4
CDE08G1175 Ceratophyllum demersum HOM05D005367 ORTHO05D006328 1.3e-08 64.7 115 37.4
Aa31LG1G11110 Aethionema arabicum HOM05D005367 ORTHO05D006328 2.2e-08 63.9 108 35.2
CARHR000590 Cardamine hirsuta HOM05D005367 ORTHO05D006328 3.1e-07 60.1 113 34.5
ATR0680G132 Amborella trichopoda HOM05D005367 ORTHO05D006328 1.5e-06 57.8 96 34.4
Mapoly0101s0052 Marchantia polymorpha HOM05D019105 ORTHO05D018335 2.6e-06 57.0 135 29.6


User provided reference genes

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