Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0033804 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 2.3e-30 134.8 63 100.0
CSS0010493 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 1.6e-15 85.5 60 68.3
Actinidia04875 Actinidia chinensis HOM05D004701 ORTHO05D005220 2.8e-12 74.7 59 62.7
vmacro17562 Vaccinium macrocarpon HOM05D004701 ORTHO05D005220 1.4e-11 72.4 57 61.4
Rhsim08G0152800 Rhododendron simsii HOM05D004701 ORTHO05D005220 5.3e-11 70.5 57 59.6
Dinv38737 Davidia involucrata HOM05D004701 ORTHO05D005220 1.2e-10 69.3 60 51.7
PSO063G2323 Papaver somniferum HOM05D004701 ORTHO05D005220 3.4e-10 67.8 39 69.2
CANSAT80G1745 Cannabis sativa HOM05D004701 ORTHO05D005220 6.5e-09 63.5 36 69.4
Migut.I00201 Erythranthe guttata HOM05D004701 ORTHO05D005220 6.5e-09 63.5 41 58.5
PSO832G0806 Papaver somniferum HOM05D004701 ORTHO05D005220 8.5e-09 63.2 38 63.2
Aqoxy3G03462 Aquilegia oxysepala HOM05D004701 ORTHO05D005220 1.9e-08 62.0 55 47.3
Eucgr.B00530 Eucalyptus grandis HOM05D004701 ORTHO05D005220 3.2e-08 61.2 59 44.1
TAR629G0729 Trochodendron aralioides HOM05D004701 ORTHO05D005220 3.2e-08 61.2 38 63.2
TAR629G3124 Trochodendron aralioides HOM05D004701 ORTHO05D005220 3.2e-08 61.2 38 63.2
Nn4g23237 Nelumbo nucifera HOM05D004701 ORTHO05D005220 4.2e-08 60.8 35 71.4
Nitab4.5_0005900g0110 Nicotiana tabacum HOM05D004701 ORTHO05D005220 4.2e-08 60.8 35 71.4
Manes.14G080700 Manihot esculenta HOM05D004701 ORTHO05D005220 5.5e-08 60.5 38 60.5
PGR083G0417 Punica granatum HOM05D004701 ORTHO05D005220 5.5e-08 60.5 36 66.7
Sed0001989 Sechium edule HOM05D004701 ORTHO05D005220 5.5e-08 60.5 50 52.0
GSVIVG01007980001 Vitis vinifera HOM05D004701 ORTHO05D005220 5.5e-08 60.5 36 63.9
Nitab4.5_0001211g0300 Nicotiana tabacum HOM05D004701 ORTHO05D005220 9.4e-08 59.7 35 71.4
Cpa.g.sc341.2 Carica papaya HOM05D004701 ORTHO05D005220 2.1e-07 58.5 38 60.5
Thecc.03G092900 Theobroma cacao HOM05D004701 ORTHO05D005220 2.1e-07 58.5 35 68.6
Cc00_g08370 Coffea canephora HOM05D004701 ORTHO05D005220 2.7e-07 58.2 56 46.4
Duzib068G0813 Durio zibethinus HOM05D004701 ORTHO05D005220 2.7e-07 58.2 39 61.5
ECA246G0122 Erigeron canadensis HOM05D004701 ORTHO05D005220 4.6e-07 57.4 36 61.1
Lsat_1_v5_gn_5_21460 Lactuca sativa HOM05D004701 ORTHO05D005220 6.1e-07 57.0 56 42.9
CsaV3_1G002500 Cucumis sativus L. HOM05D004701 ORTHO05D005220 7.9e-07 56.6 50 48.0
HanXRQChr05g0154901 Helianthus annuus HOM05D004701 ORTHO05D005220 7.9e-07 56.6 39 53.8
Atru.chr9.198 Acer truncatum HOM05D004701 ORTHO05D005220 1.0e-06 56.2 38 60.5
MELO3C017186.2 Cucumis melo HOM05D004701 ORTHO05D005220 1.0e-06 56.2 36 58.3
MD06G1196700 Malus domestica HOM05D004701 ORTHO05D005220 1.0e-06 56.2 36 63.9
Sopen03g034820 Solanum pennellii HOM05D004701 ORTHO05D005220 1.0e-06 56.2 35 68.6
PGSC0003DMG400019522 Solanum tuberosum HOM05D004701 ORTHO05D005220 1.0e-06 56.2 35 68.6
MBI02_g20482_MAGBIO Magnolia biondii HOM05D004701 ORTHO05D005220 1.4e-06 55.8 38 63.2
Sabra17G0093000 Salix brachista HOM05D004701 ORTHO05D005220 1.4e-06 55.8 57 42.1
Duzib205G0738 Durio zibethinus HOM05D004701 ORTHO05D005220 1.8e-06 55.5 39 59.0
Peaxi162Scf00274g00452 Petunia axillaris HOM05D004701 ORTHO05D005220 2.3e-06 55.1 35 62.9
Solyc03g115840.4 Solanum lycopersicum HOM05D004701 ORTHO05D005220 3.9e-06 54.3 35 65.7
TWI81G0545 Tripterygium wilfordii HOM05D004701 ORTHO05D005220 3.9e-06 54.3 35 62.9
CDE02G4120 Ceratophyllum demersum HOM05D004701 ORTHO05D005220 5.1e-06 53.9 41 53.7
COL.COLO4_36922 Corchorus olitorius HOM05D004701 ORTHO05D005220 5.1e-06 53.9 35 62.9
FAN08G0610 Fragaria x ananassa HOM05D004701 ORTHO05D005220 5.1e-06 53.9 36 58.3
FAN13G1597 Fragaria x ananassa HOM05D004701 ORTHO05D005220 5.1e-06 53.9 36 58.3
Lj5A108G55 Lonicera japonica HOM05D004701 ORTHO05D005220 5.1e-06 53.9 41 51.2
Potri.017G112200 Populus trichocarpa HOM05D004701 ORTHO05D005220 5.1e-06 53.9 38 52.6
RcHm_v2.0_Chr7g0181841 Rosa chinensis HOM05D004701 ORTHO05D005220 5.1e-06 53.9 36 58.3
Prupe.5G196200 Prunus persica HOM05D004701 ORTHO05D005220 6.7e-06 53.5 36 61.1
Gohir.A03G067500 Gossypium hirsutum HOM05D004701 ORTHO05D005220 8.8e-06 53.1 35 60.0
Gohir.D03G094000 Gossypium hirsutum HOM05D004701 ORTHO05D005220 8.8e-06 53.1 35 60.0
Gorai.003G098100 Gossypium raimondii HOM05D004701 ORTHO05D005220 8.8e-06 53.1 35 60.0


User provided reference genes

Program Settings