Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0033796 Camellia sinensis var. sinensis HOM05D004648 ORTHO05D005782 2.9e-109 398.7 216 100.0
CSS0043130 Camellia sinensis var. sinensis HOM05D004648 ORTHO05D005782 1.4e-108 396.4 216 99.1
Dinv13591 Davidia involucrata HOM05D004648 ORTHO05D005782 2.8e-80 302.4 197 82.7
Actinidia06509 Actinidia chinensis HOM05D004648 ORTHO05D005782 3.0e-74 282.3 209 72.2
Nn5g29856 Nelumbo nucifera HOM05D004648 ORTHO05D005782 2.0e-70 269.6 208 68.8
TAR376G0132 Trochodendron aralioides HOM05D004648 ORTHO05D005782 7.8e-70 267.7 208 68.3
Hma1.2p1_0802F.1_g220630 Hydrangea macrophylla HOM05D004648 ORTHO05D005782 3.3e-68 262.3 208 69.7
Rhsim10G0173500 Rhododendron simsii HOM05D004648 ORTHO05D005782 5.6e-68 261.5 215 69.3
Aqoxy6G00847 Aquilegia oxysepala HOM05D004648 ORTHO05D005782 1.5e-65 253.4 210 62.9
PSO541G6255 Papaver somniferum HOM05D004648 ORTHO05D005782 4.4e-65 251.9 209 62.2
AUR62017983 Chenopodium quinoa HOM05D004648 ORTHO05D005782 1.3e-64 250.4 209 63.6
Nitab4.5_0010932g0010 Nicotiana tabacum HOM05D004648 ORTHO05D005782 3.7e-64 248.8 211 63.0
EL10Ac6g15193 Beta vulgaris HOM05D004648 ORTHO05D005782 1.6e-62 243.4 207 62.8
Sc16g0000570 Simmondsia chinensis HOM05D004648 ORTHO05D005782 2.7e-62 242.7 209 62.7
AUR62003673 Chenopodium quinoa HOM05D004648 ORTHO05D005782 1.7e-61 240.0 209 61.2
RcHm_v2.0_Chr2g0111021 Rosa chinensis HOM05D004648 ORTHO05D005782 2.3e-61 239.6 211 63.0
unitig_748.g7247 Utricularia gibba HOM05D000258 ORTHO05D001416 2.3e-61 239.6 210 60.5
Cc07_g14000 Coffea canephora HOM05D004648 ORTHO05D005782 3.0e-61 239.2 212 60.4
DCAR_003444 Daucus carota HOM05D004648 ORTHO05D005782 3.0e-61 239.2 200 63.5
CiPaw.07G046500 Carya illinoinensis HOM05D004648 ORTHO05D005782 5.0e-61 238.4 211 62.6
SGA_v2.0_scaffold45G17227 Striga asiatica HOM05D004648 ORTHO05D005782 5.0e-61 238.4 209 60.3
Ah.03g139860 Amaranthus hybridus HOM05D004648 ORTHO05D005782 6.6e-61 238.0 207 61.4
Cfa006874 Carpinus fangiana HOM05D004648 ORTHO05D005782 1.1e-60 237.3 210 64.8
Sopen11g005530 Solanum pennellii HOM05D004648 ORTHO05D005782 3.3e-60 235.7 211 62.6
Prupe.6G203100 Prunus persica HOM05D004648 ORTHO05D005782 4.3e-60 235.3 212 61.3
Solyc11g010720.1 Solanum lycopersicum HOM05D004648 ORTHO05D005782 7.3e-60 234.6 211 62.1
PGSC0003DMG400016127 Solanum tuberosum HOM05D004648 ORTHO05D005782 1.2e-59 233.8 211 61.6
SalBow5G0620 Salvia bowleyana HOM05D004648 ORTHO05D005782 3.6e-59 232.3 210 59.0
Haze_03885 Corylus avellana HOM05D004648 ORTHO05D005782 4.7e-59 231.9 210 62.9
TAR628G0215 Trochodendron aralioides HOM05D004648 ORTHO05D005782 8.1e-59 231.1 210 59.5
Manes.13G100500 Manihot esculenta HOM05D004648 ORTHO05D005782 2.3e-58 229.6 207 58.5
QL06p035918 Quercus lobata HOM05D004648 ORTHO05D005782 2.3e-58 229.6 210 61.4
SalBow5G1021 Salvia bowleyana HOM05D004648 ORTHO05D005782 4.0e-58 228.8 210 58.1
FvH4_1g19520 Fragaria vesca HOM05D004648 ORTHO05D005782 5.2e-58 228.4 211 61.1
CANSAT25G1975 Cannabis sativa HOM05D004648 ORTHO05D005782 3.4e-57 225.7 209 58.9
Cpa.g.sc21.29 Carica papaya HOM05D004648 ORTHO05D005782 4.4e-57 225.3 210 58.1
MD15G1310800 Malus domestica HOM05D004648 ORTHO05D005782 7.5e-57 224.6 211 60.2
Atru.chr13.996 Acer truncatum HOM05D004648 ORTHO05D005782 1.3e-56 223.8 209 57.9
Gorai.009G228900 Gossypium raimondii HOM05D004648 ORTHO05D005782 1.7e-56 223.4 210 58.1
Migut.K00806 Erythranthe guttata HOM05D004648 ORTHO05D005782 2.2e-56 223.0 209 56.0
Gohir.D05G221700 Gossypium hirsutum HOM05D004648 ORTHO05D005782 6.4e-56 221.5 210 58.1
CAN.G252.11 Capsicum annuum HOM05D004648 ORTHO05D005782 8.3e-56 221.1 211 57.3
Duzib093G0339 Durio zibethinus HOM05D004648 ORTHO05D005782 8.3e-56 221.1 211 57.3
Thecc.08G072400 Theobroma cacao HOM05D004648 ORTHO05D005782 1.9e-55 219.9 210 57.1
TWI74G0279 Tripterygium wilfordii HOM05D004648 ORTHO05D005782 4.1e-55 218.8 209 59.8
Gohir.A05G219000 Gossypium hirsutum HOM05D004648 ORTHO05D005782 9.2e-55 217.6 210 57.1
CiPaw.08G056600 Carya illinoinensis HOM05D004648 ORTHO05D005782 2.7e-54 216.1 206 58.7
COL.COLO4_35262 Corchorus olitorius HOM05D004648 ORTHO05D005782 1.3e-53 213.8 211 55.9
Duzib041G0289 Durio zibethinus HOM05D004648 ORTHO05D005782 3.0e-53 212.6 210 57.1
Nitab4.5_0000131g0120 Nicotiana tabacum HOM05D000239 ORTHO05D000484 3.0e-53 212.6 211 55.5
PGSC0003DMG401009338 Solanum tuberosum HOM05D004648 ORTHO05D005782 8.6e-53 211.1 211 55.0
Peaxi162Scf00085g00235 Petunia axillaris HOM05D004648 ORTHO05D005782 2.5e-52 209.5 198 57.1
Sabra02G0087800 Salix brachista HOM05D004648 ORTHO05D005782 4.3e-52 208.8 207 56.0
Oeu054771.1 Olea europaea HOM05D004648 ORTHO05D005782 7.3e-52 208.0 210 55.7
Potri.002G111300 Populus trichocarpa HOM05D004648 ORTHO05D005782 9.5e-52 207.6 207 56.0
Thecc.01G089300 Theobroma cacao HOM05D004648 ORTHO05D005782 9.5e-52 207.6 214 53.3
Solyc04g076470.1 Solanum lycopersicum HOM05D004648 ORTHO05D005782 2.8e-51 206.1 211 55.9
MBI16_g31265_MAGBIO Magnolia biondii HOM05D004648 ORTHO05D005782 6.2e-51 204.9 200 57.5
Gorai.007G058400 Gossypium raimondii HOM05D004648 ORTHO05D005782 8.1e-51 204.5 213 55.9
Nitab4.5_0011537g0010 Nicotiana tabacum HOM05D004648 ORTHO05D005782 8.1e-51 204.5 211 54.5
MELO3C011082.2 Cucumis melo HOM05D004648 ORTHO05D005782 1.8e-50 203.4 210 53.3
Sed0006831 Sechium edule HOM05D004648 ORTHO05D005782 1.8e-50 203.4 210 54.3
Sopen04g030220 Solanum pennellii HOM05D004648 ORTHO05D005782 2.3e-50 203.0 211 54.5
Gohir.A11G050200 Gossypium hirsutum HOM05D004648 ORTHO05D005782 3.1e-50 202.6 212 55.2
Gohir.D11G053600 Gossypium hirsutum HOM05D004648 ORTHO05D005782 3.1e-50 202.6 218 54.6
ClCG08G011630 Citrullus lanatus HOM05D004648 ORTHO05D005782 1.5e-49 200.3 210 52.4
CsaV3_2G030200 Cucumis sativus L. HOM05D004648 ORTHO05D005782 1.5e-49 200.3 216 52.3
HanXRQChr09g0250941 Helianthus annuus HOM05D004648 ORTHO05D005782 3.4e-49 199.1 214 52.8
Eucgr.F00428 Eucalyptus grandis HOM05D004648 ORTHO05D005782 5.8e-49 198.4 208 54.8
Peaxi162Scf00454g10013 Petunia axillaris HOM05D004648 ORTHO05D005782 5.8e-49 198.4 210 52.4
RcHm_v2.0_Chr7g0235251 Rosa chinensis HOM05D004648 ORTHO05D005782 9.9e-49 197.6 211 51.7
QL09p018000 Quercus lobata HOM05D004648 ORTHO05D005782 1.3e-48 197.2 216 52.8
Cfa013807 Carpinus fangiana HOM05D004648 ORTHO05D005782 1.7e-48 196.8 209 53.6
Ciclev10002461m.g Citrus clementina HOM05D004648 ORTHO05D005782 1.7e-48 196.8 210 51.4
Manes.05G189800 Manihot esculenta HOM05D004648 ORTHO05D005782 2.2e-48 196.4 211 54.0
Cc10_g08430 Coffea canephora HOM05D004648 ORTHO05D005782 2.9e-48 196.1 210 51.4
Prupe.1G533800 Prunus persica HOM05D004648 ORTHO05D005782 2.9e-48 196.1 211 52.6
HPP92_003649 Vanilla planifolia HOM05D004648 ORTHO05D005782 2.9e-48 196.1 214 54.7
TWI12G1102 Tripterygium wilfordii HOM05D004648 ORTHO05D005782 3.8e-48 195.7 211 55.0
CANSAT01G3166 Cannabis sativa HOM05D004648 ORTHO05D005782 8.4e-48 194.5 214 50.9
COL.COLO4_27367 Corchorus olitorius HOM05D004648 ORTHO05D005782 1.1e-47 194.1 216 50.5
THA.LOC104801678 Tarenaya hassleriana HOM05D004648 ORTHO05D005782 1.4e-47 193.7 213 49.8
Ca_16010_v3 Cicer arietinum L. HOM05D004648 ORTHO05D005782 3.2e-47 192.6 199 54.3
Duzib264G0833 Durio zibethinus HOM05D004648 ORTHO05D005782 4.1e-47 192.2 211 53.1
Psat5g049360 Pisum sativum HOM05D004648 ORTHO05D005782 7.1e-47 191.4 196 55.1
MD15G1387400 Malus domestica HOM05D004648 ORTHO05D005782 9.2e-47 191.0 208 50.0
PGR042G2328 Punica granatum HOM05D004648 ORTHO05D005782 1.2e-46 190.7 211 52.6
MSTRG.24425 Avicennia marina HOM05D004648 ORTHO05D005782 1.6e-46 190.3 210 56.2
Lj4C87T6 Lonicera japonica HOM05D004648 ORTHO05D005782 2.7e-46 189.5 181 58.6
vmacro04645 Vaccinium macrocarpon HOM05D004648 ORTHO05D005782 3.5e-46 189.1 218 50.9
CAN.G475.10 Capsicum annuum HOM05D004648 ORTHO05D005782 6.0e-46 188.3 218 52.8
Lj1g0017346 Lotus japonicus HOM05D004648 ORTHO05D005782 6.0e-46 188.3 216 49.5
Zm00001eb235460 Zea mays HOM05D004648 ORTHO05D005782 7.8e-46 188.0 210 51.9
Migut.N02848 Erythranthe guttata HOM05D004648 ORTHO05D005782 1.7e-45 186.8 207 57.0
Actinidia19623 Actinidia chinensis HOM05D004648 ORTHO05D005782 5.1e-45 185.3 199 53.8
TPR.G6370 Trifolium pratense HOM05D004648 ORTHO05D005782 6.6e-45 184.9 199 52.8
ATR0767G042 Amborella trichopoda HOM05D004648 ORTHO05D005782 1.1e-44 184.1 207 49.8
Medtr3g100100 Medicago truncatula HOM05D004648 ORTHO05D005782 2.5e-44 183.0 199 53.3
Carub.0008s2638 Capsella rubella HOM05D004648 ORTHO05D005782 3.3e-44 182.6 207 49.8
Glyma.04G095900 Glycine max HOM05D004648 ORTHO05D005782 5.6e-44 181.8 208 50.0
MD08G1200200 Malus domestica HOM05D004648 ORTHO05D005782 2.8e-43 179.5 208 48.6
SGA_v2.0_scaffold48G17844 Striga asiatica HOM05D004648 ORTHO05D005782 1.1e-42 177.6 208 52.4
Glyma.06G097600 Glycine max HOM05D004648 ORTHO05D005782 2.4e-42 176.4 208 48.1
AL8G43110 Arabidopsis lyrata HOM05D004648 ORTHO05D005782 3.1e-42 176.0 199 49.2
Lalb_Chr04g0252771 Lupinus albus HOM05D004648 ORTHO05D005782 4.0e-42 175.6 213 47.4
DCAR_009556 Daucus carota HOM05D004648 ORTHO05D005782 5.2e-42 175.3 207 47.8
Lju188C4T4 Lonicera japonica HOM05D004648 ORTHO05D005782 6.9e-42 174.9 138 71.0
AT5G65520 Arabidopsis thaliana HOM05D004648 ORTHO05D005782 1.2e-41 174.1 199 48.7
FvH4_5g34561 Fragaria vesca HOM05D004648 ORTHO05D005782 3.4e-41 172.6 215 46.0
arahy.Tifrunner.gnm1.ann1.AB919Y Arachis hypogaea HOM05D004648 ORTHO05D005782 7.6e-41 171.4 214 50.0
CARHR279500 Cardamine hirsuta HOM05D004648 ORTHO05D005782 9.9e-41 171.0 205 46.8
Rhsim07G0212500 Rhododendron simsii HOM05D004648 ORTHO05D005782 9.9e-41 171.0 201 51.2
arahy.Tifrunner.gnm1.ann1.S42CYX Arachis hypogaea HOM05D004648 ORTHO05D005782 4.9e-40 168.7 214 49.5
VMungo1309G1710 Vigna mungo HOM05D004648 ORTHO05D005782 4.9e-40 168.7 208 45.7
Phvul.003G288400 Phaseolus vulgaris HOM05D004648 ORTHO05D005782 6.4e-40 168.3 217 48.8
A09p09070 Brassica napus HOM05D004648 ORTHO05D005782 1.4e-39 167.2 196 48.0
BcaB04g20019 Brassica carinata HOM05D004648 ORTHO05D005782 1.9e-39 166.8 207 45.9
BraA09t36559Z Brassica rapa HOM05D004648 ORTHO05D005782 1.9e-39 166.8 196 48.0
BcaC04g23260 Brassica carinata HOM05D004648 ORTHO05D005782 2.4e-39 166.4 196 47.4
BolC9t53956H Brassica oleracea HOM05D004648 ORTHO05D005782 2.4e-39 166.4 196 47.4
Lalb_Chr08g0242581 Lupinus albus HOM05D004648 ORTHO05D005782 3.2e-39 166.0 216 45.8
Thhalv10005489m.g Eutrema salsugineum HOM05D004648 ORTHO05D005782 9.3e-39 164.5 196 47.4
Glyma.14G182600 Glycine max HOM05D004648 ORTHO05D005782 9.3e-39 164.5 210 48.6
C09p10560 Brassica napus HOM05D004648 ORTHO05D005782 3.5e-38 162.5 193 47.7
Phvul.009G035900 Phaseolus vulgaris HOM05D004648 ORTHO05D005782 3.5e-38 162.5 208 46.6
Lj4g0004938 Lotus japonicus HOM05D004648 ORTHO05D005782 7.8e-38 161.4 212 50.0
ECA232G0149 Erigeron canadensis HOM05D000476 ORTHO05D005719 3.0e-37 159.5 161 55.9
Sp2g28620 Schrenkiella parvula HOM05D004648 ORTHO05D005782 3.0e-37 159.5 194 47.4
HanXRQChr15g0485271 Helianthus annuus HOM05D004648 ORTHO05D005782 6.6e-37 158.3 191 48.2
ECA247G1048 Erigeron canadensis HOM05D004648 ORTHO05D005782 1.5e-36 157.1 209 45.5
CDE02G1147 Ceratophyllum demersum HOM05D004648 ORTHO05D005782 1.9e-36 156.8 192 45.3
SEGI_01557 Sequoiadendron giganteum HOM05D004648 ORTHO05D005782 2.5e-36 156.4 215 45.6
Os02g0204000 Oryza sativa ssp. japonica HOM05D004648 ORTHO05D005782 1.3e-35 154.1 142 59.9
SEGI_08621 Sequoiadendron giganteum HOM05D004648 ORTHO05D005782 1.3e-35 154.1 208 45.7
HanXRQChr02g0046211 Helianthus annuus HOM05D004648 ORTHO05D005782 1.6e-35 153.7 210 45.2
Sc26g0003620 Simmondsia chinensis HOM05D004648 ORTHO05D005782 3.6e-35 152.5 211 45.0
Lsat_1_v5_gn_8_20321 Lactuca sativa HOM05D004648 ORTHO05D005782 4.8e-35 152.1 206 41.7
CDE04G0511 Ceratophyllum demersum HOM05D004648 ORTHO05D005782 6.2e-35 151.8 198 44.4
Glyma.08G278900 Glycine max HOM05D004648 ORTHO05D005782 1.2e-33 147.5 214 48.1
VMungo0647G0422 Vigna mungo HOM05D004648 ORTHO05D005782 3.8e-32 142.5 210 45.2
Psat4g116960 Pisum sativum HOM05D004648 ORTHO05D005782 1.0e-29 134.4 213 41.8
Medtr8g068400 Medicago truncatula HOM05D004648 ORTHO05D005782 3.0e-29 132.9 211 40.3
Ca_22619_v3 Cicer arietinum L. HOM05D004648 ORTHO05D005782 1.1e-28 131.0 138 52.9
Ah.05g171370 Amaranthus hybridus HOM05D004648 ORTHO05D005782 3.6e-27 125.9 220 39.5
EL10Ac1g00504 Beta vulgaris HOM05D004648 ORTHO05D005782 1.4e-26 124.0 219 39.3
EL10Ac2g03122 Beta vulgaris HOM05D004648 ORTHO05D005782 1.8e-26 123.6 117 59.0
AagrBONN_evm.TU.Sc2ySwM_368.397 Anthoceros agrestis HOM05D004648 ORTHO05D005782 3.4e-25 119.4 202 38.1
DCAR_009557 Daucus carota HOM05D004648 ORTHO05D005782 1.4e-23 114.0 115 52.2
Mapoly0104s0024 Marchantia polymorpha HOM05D004648 ORTHO05D005782 1.9e-23 113.6 203 36.9
Sc26g0002990 Simmondsia chinensis HOM05D004648 ORTHO05D005782 6.7e-21 105.1 139 47.5
Sc26g0002870 Simmondsia chinensis HOM05D004648 ORTHO05D005782 2.8e-19 99.8 134 45.5
FAN28G2101 Fragaria x ananassa HOM05D004648 ORTHO05D005782 2.0e-09 67.0 56 62.5


User provided reference genes

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