Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0033790 Camellia sinensis var. sinensis HOM05D005641 ORTHO05D007953 3.2e-87 325.1 171 100.0
CSS0039741 Camellia sinensis var. sinensis HOM05D005641 ORTHO05D007953 7.5e-84 313.9 148 98.6
Dinv42223 Davidia involucrata HOM05D005641 ORTHO05D007953 5.6e-63 244.6 149 76.5
vmacro19527 Vaccinium macrocarpon HOM05D005641 ORTHO05D007953 8.9e-61 237.3 134 82.8
ECA240G0483 Erigeron canadensis HOM05D005641 ORTHO05D007953 4.4e-60 235.0 146 74.7
TWI14G0306 Tripterygium wilfordii HOM05D005641 ORTHO05D007953 7.5e-60 234.2 144 75.0
Manes.10G080400 Manihot esculenta HOM05D005641 ORTHO05D007953 1.7e-59 233.0 133 78.9
Potri.009G090100 Populus trichocarpa HOM05D005641 ORTHO05D007953 1.7e-59 233.0 142 73.9
Rhsim05G0090100 Rhododendron simsii HOM05D005641 ORTHO05D007953 1.7e-59 233.0 133 81.2
Oeu037265.1 Olea europaea HOM05D005641 ORTHO05D007953 2.9e-59 232.3 124 82.3
Hma1.2p1_1023F.1_g248880 Hydrangea macrophylla HOM05D005641 ORTHO05D007953 4.9e-59 231.5 129 81.4
MD05G1097100 Malus domestica HOM05D005641 ORTHO05D007953 8.3e-59 230.7 126 80.2
HanXRQChr03g0069981 Helianthus annuus HOM05D005641 ORTHO05D007953 4.1e-58 228.4 134 76.1
GSVIVG01037858001 Vitis vinifera HOM05D005641 ORTHO05D007953 4.1e-58 228.4 144 71.5
TAR376G1148 Trochodendron aralioides HOM05D005641 ORTHO05D007953 5.4e-58 228.0 126 82.5
Thecc.02G114700 Theobroma cacao HOM05D005641 ORTHO05D007953 7.1e-58 227.6 146 69.9
Cpa.g.sc106.73 Carica papaya HOM05D005641 ORTHO05D007953 1.2e-57 226.9 136 72.8
Haze_10242 Corylus avellana HOM05D005641 ORTHO05D007953 1.2e-57 226.9 121 82.6
Eucgr.G01263 Eucalyptus grandis HOM05D005641 ORTHO05D007953 1.2e-57 226.9 133 75.2
Sabra09G0069700 Salix brachista HOM05D005641 ORTHO05D007953 1.2e-57 226.9 146 71.2
COL.COLO4_32537 Corchorus olitorius HOM05D005641 ORTHO05D007953 2.7e-57 225.7 131 76.3
Cfa004645 Carpinus fangiana HOM05D005641 ORTHO05D007953 4.6e-57 224.9 121 82.6
QL02p069388 Quercus lobata HOM05D005641 ORTHO05D007953 4.6e-57 224.9 131 76.3
FAN15G3008 Fragaria x ananassa HOM05D005641 ORTHO05D007953 6.0e-57 224.6 125 77.6
RcHm_v2.0_Chr6g0253411 Rosa chinensis HOM05D005641 ORTHO05D007953 6.0e-57 224.6 135 74.8
Sc14g0002550 Simmondsia chinensis HOM05D005641 ORTHO05D007953 1.7e-56 223.0 145 73.8
FvH4_2g04060 Fragaria vesca HOM05D005641 ORTHO05D007953 3.9e-56 221.9 125 76.8
Lsat_1_v5_gn_9_112460 Lactuca sativa HOM05D005641 ORTHO05D007953 3.9e-56 221.9 127 78.0
Cc02_g19690 Coffea canephora HOM05D005641 ORTHO05D007953 6.6e-56 221.1 137 73.7
FAN20G2714 Fragaria x ananassa HOM05D005641 ORTHO05D007953 8.6e-56 220.7 125 76.0
Actinidia27984 Actinidia chinensis HOM05D005641 ORTHO05D007953 1.1e-55 220.3 128 81.2
Prupe.8G141700 Prunus persica HOM05D005641 ORTHO05D007953 2.5e-55 219.2 126 76.2
Atru.chr5.2402 Acer truncatum HOM05D005641 ORTHO05D007953 4.3e-55 218.4 146 65.1
FAN24G2036 Fragaria x ananassa HOM05D005641 ORTHO05D007953 4.3e-55 218.4 122 77.0
Nn1g04606 Nelumbo nucifera HOM05D005641 ORTHO05D007953 4.3e-55 218.4 137 71.5
EL10Ac8g19366 Beta vulgaris HOM05D005641 ORTHO05D007953 1.2e-54 216.9 133 74.4
PGR042G1829 Punica granatum HOM05D005641 ORTHO05D007953 1.2e-54 216.9 135 70.4
Ah.09g231980 Amaranthus hybridus HOM05D005641 ORTHO05D007953 1.6e-54 216.5 147 69.4
Ciclev10029502m.g Citrus clementina HOM05D005641 ORTHO05D007953 2.1e-54 216.1 132 73.5
MELO3C017992.2 Cucumis melo HOM05D005641 ORTHO05D007953 4.7e-54 214.9 123 76.4
AUR62031337 Chenopodium quinoa HOM05D005641 ORTHO05D007953 8.1e-54 214.2 129 75.2
CANSAT25G1977 Cannabis sativa HOM05D005641 ORTHO05D007953 1.1e-53 213.8 126 74.6
CsaV3_4G000430 Cucumis sativus L. HOM05D005641 ORTHO05D007953 1.1e-53 213.8 123 75.6
PGSC0003DMG400005454 Solanum tuberosum HOM05D005641 ORTHO05D007953 1.4e-53 213.4 144 68.8
Aqoxy6G02714 Aquilegia oxysepala HOM05D005641 ORTHO05D007953 1.8e-53 213.0 131 73.3
DCAR_029115 Daucus carota HOM05D005641 ORTHO05D007953 3.1e-53 212.2 118 77.1
Duzib052G0024 Durio zibethinus HOM05D005641 ORTHO05D007953 4.0e-53 211.8 146 67.1
Gorai.005G232800 Gossypium raimondii HOM05D005641 ORTHO05D007953 4.0e-53 211.8 147 66.0
AUR62022504 Chenopodium quinoa HOM05D005641 ORTHO05D007953 5.2e-53 211.5 146 68.5
Sopen10g020870 Solanum pennellii HOM05D005641 ORTHO05D007953 5.2e-53 211.5 148 66.9
Nitab4.5_0012285g0030 Nicotiana tabacum HOM05D005641 ORTHO05D007953 6.8e-53 211.1 146 65.1
CiPaw.06G166900 Carya illinoinensis HOM05D005641 ORTHO05D007953 8.9e-53 210.7 133 71.4
Gohir.A03G183900 Gossypium hirsutum HOM05D005641 ORTHO05D007953 1.2e-52 210.3 147 65.3
Eucgr.G01266 Eucalyptus grandis HOM05D005641 ORTHO05D007953 1.5e-52 209.9 130 70.0
MSTRG.5328 Avicennia marina HOM05D005641 ORTHO05D007953 2.6e-52 209.1 145 66.9
Gohir.D02G205400 Gossypium hirsutum HOM05D005641 ORTHO05D007953 2.6e-52 209.1 147 65.3
Migut.N01150 Erythranthe guttata HOM05D005641 ORTHO05D007953 4.4e-52 208.4 127 72.4
Solyc10g049650.3 Solanum lycopersicum HOM05D005641 ORTHO05D007953 4.4e-52 208.4 137 68.6
CDE06G0500 Ceratophyllum demersum HOM05D005641 ORTHO05D007953 9.9e-52 207.2 136 66.2
Migut.O00678 Erythranthe guttata HOM05D005641 ORTHO05D007953 9.9e-52 207.2 127 71.7
Lj1g0011960 Lotus japonicus HOM05D005641 ORTHO05D007953 9.9e-52 207.2 130 70.0
PSO675G2895 Papaver somniferum HOM05D005641 ORTHO05D007953 9.9e-52 207.2 144 70.1
Sed0000346 Sechium edule HOM05D005641 ORTHO05D007953 9.9e-52 207.2 123 75.6
SGA_v2.0_scaffold337G49200 Striga asiatica HOM05D005641 ORTHO05D007953 9.9e-52 207.2 128 72.7
FAN27G3103 Fragaria x ananassa HOM05D005641 ORTHO05D007953 4.9e-51 204.9 116 75.9
PSO541G1794 Papaver somniferum HOM05D005641 ORTHO05D007953 5.4e-50 201.4 143 69.2
Hund12610 Selenicereus undatus HOM05D005641 ORTHO05D007953 9.2e-50 200.7 148 67.6
Os12g0508266 Oryza sativa ssp. japonica HOM05D005641 ORTHO05D007953 1.6e-49 199.9 150 61.3
CAN.G1.68 Capsicum annuum HOM05D005641 ORTHO05D007953 3.5e-49 198.7 144 64.6
Zm00001eb137960 Zea mays HOM05D005641 ORTHO05D007953 3.5e-49 198.7 140 65.0
Medtr5g005150 Medicago truncatula HOM05D005641 ORTHO05D007953 4.6e-49 198.4 125 68.8
unitig_744.g24456 Utricularia gibba HOM05D005641 ORTHO05D007953 4.6e-49 198.4 119 73.9
Peaxi162Scf00083g00163 Petunia axillaris HOM05D005641 ORTHO05D007953 1.3e-48 196.8 143 64.3
Aa31LG8G12890 Aethionema arabicum HOM05D005641 ORTHO05D007953 2.3e-48 196.1 122 68.9
Phvul.002G052300 Phaseolus vulgaris HOM05D005641 ORTHO05D007953 3.9e-48 195.3 125 67.2
SEGI_20221 Sequoiadendron giganteum HOM05D005641 ORTHO05D007953 3.9e-48 195.3 124 71.0
SEGI_25796 Sequoiadendron giganteum HOM05D005641 ORTHO05D007953 3.9e-48 195.3 124 71.0
Carub.0003s2882 Capsella rubella HOM05D005641 ORTHO05D007953 6.6e-48 194.5 122 66.4
HPP92_020459 Vanilla planifolia HOM05D005641 ORTHO05D007953 1.1e-47 193.7 129 65.9
Ciclev10028542m.g Citrus clementina HOM05D005641 ORTHO05D007953 3.3e-47 192.2 132 65.2
THA.LOC104819534 Tarenaya hassleriana HOM05D005641 ORTHO05D007953 3.3e-47 192.2 122 67.2
arahy.Tifrunner.gnm1.ann1.GRNJ5W Arachis hypogaea HOM05D005641 ORTHO05D007953 4.3e-47 191.8 125 70.4
CARHR284800 Cardamine hirsuta HOM05D005641 ORTHO05D007953 4.3e-47 191.8 122 66.4
Thhalv10022899m.g Eutrema salsugineum HOM05D005641 ORTHO05D007953 4.3e-47 191.8 124 65.3
Hma1.2p1_1023F.1_g248890 Hydrangea macrophylla HOM05D005641 ORTHO05D007953 7.3e-47 191.0 147 65.3
Sp3g28020 Schrenkiella parvula HOM05D005641 ORTHO05D007953 9.6e-47 190.7 126 63.5
Nitab4.5_0001259g0120 Nicotiana tabacum HOM05D005641 ORTHO05D007953 1.2e-46 190.3 118 72.0
AT2G14825 Arabidopsis thaliana HOM05D005641 ORTHO05D007953 1.6e-46 189.9 122 63.9
A09p10560 Brassica napus HOM05D005641 ORTHO05D007953 1.6e-46 189.9 122 66.4
BraA09t36698Z Brassica rapa HOM05D005641 ORTHO05D007953 1.6e-46 189.9 122 66.4
AL3G46570 Arabidopsis lyrata HOM05D005641 ORTHO05D007953 2.8e-46 189.1 122 64.8
BcaC04g23064 Brassica carinata HOM05D005641 ORTHO05D007953 2.8e-46 189.1 122 65.6
BolC9t54144H Brassica oleracea HOM05D005641 ORTHO05D007953 2.8e-46 189.1 122 65.6
HPP92_026175 Vanilla planifolia HOM05D005641 ORTHO05D007953 2.8e-46 189.1 129 65.1
TPR.G8292 Trifolium pratense HOM05D005641 ORTHO05D007953 6.2e-46 188.0 124 64.5
C09p12490 Brassica napus HOM05D005641 ORTHO05D007953 1.1e-45 187.2 122 64.8
PGR042G3728 Punica granatum HOM05D005641 ORTHO05D007953 1.4e-45 186.8 128 64.1
QL02p069415 Quercus lobata HOM05D000030 ORTHO05D000009 7.6e-44 181.0 109 69.7
Glyma.01G243000 Glycine max HOM05D005641 ORTHO05D007953 1.1e-42 177.2 127 66.1
VMungo1215G0158 Vigna mungo HOM05D005641 ORTHO05D007953 1.9e-42 176.4 157 51.6
SalBow3G4250 Salvia bowleyana HOM05D005641 ORTHO05D007953 3.1e-37 159.1 101 72.3
arahy.Tifrunner.gnm1.ann1.C5GEYC Arachis hypogaea HOM05D005641 ORTHO05D007953 2.7e-33 146.0 124 59.7
Ca_24352_v3 Cicer arietinum L. HOM05D005641 ORTHO05D007953 3.9e-32 142.1 95 65.3
Hma1.2p1_1023F.1_g248900 Hydrangea macrophylla HOM05D005641 ORTHO05D007953 6.6e-32 141.4 82 78.0
SMO119G0506 Selaginella moellendorffii HOM05D005641 ORTHO05D007953 2.5e-31 139.4 117 55.6
Pp3c6_20250 Physcomitrium patens HOM05D005641 ORTHO05D007953 7.3e-31 137.9 122 52.5
Lj9A326T80 Lonicera japonica HOM05D005641 ORTHO05D007953 7.6e-28 127.9 73 78.1
CBR_g32245 Chara braunii HOM05D005641 ORTHO05D007953 1.7e-27 126.7 114 49.1
Peaxi162Scf00003g02633 Petunia axillaris HOM05D005641 ORTHO05D007953 6.4e-27 124.8 143 49.7
Lj9A326T79 Lonicera japonica HOM05D005641 ORTHO05D007953 9.3e-26 120.9 74 70.3
ClCG10G010510 Citrullus lanatus HOM05D005641 ORTHO05D007953 3.5e-25 119.0 121 52.1
RcHm_v2.0_Chr6g0253251 Rosa chinensis HOM05D005641 ORTHO05D007953 1.3e-24 117.1 96 53.1
Psat4g227920 Pisum sativum HOM05D005641 ORTHO05D007953 1.5e-23 113.6 125 47.2
RcHm_v2.0_Chr6g0253401 Rosa chinensis HOM05D005641 ORTHO05D035713 3.3e-23 112.5 89 55.1
FvH4_2g04050 Fragaria vesca HOM05D005641 ORTHO05D035713 1.6e-22 110.2 89 53.9
Prupe.8G141500 Prunus persica HOM05D005641 ORTHO05D007953 4.8e-22 108.6 89 49.4
RcHm_v2.0_Chr6g0253291 Rosa chinensis HOM05D005641 ORTHO05D007953 5.3e-21 105.1 93 46.2
RcHm_v2.0_Chr6g0253371 Rosa chinensis HOM05D001615 ORTHO05D001493 1.2e-20 104.0 99 50.5
RcHm_v2.0_Chr6g0253261 Rosa chinensis HOM05D005641 ORTHO05D007953 6.0e-17 91.7 91 46.2
RcHm_v2.0_Chr6g0253341 Rosa chinensis HOM05D005641 ORTHO05D007953 3.0e-16 89.4 99 40.4
Lalb_Chr16g0376281 Lupinus albus HOM05D005641 ORTHO05D007953 4.1e-13 79.0 54 64.8
RcHm_v2.0_Chr6g0253281 Rosa chinensis HOM05D005641 ORTHO05D007953 2.0e-12 76.6 67 50.7
Nitab4.5_0007768g0030 Nicotiana tabacum HOM05D005641 ORTHO05D007953 1.7e-11 73.6 46 69.6
FAN24G2128 Fragaria x ananassa HOM05D005641 ORTHO05D208318 9.3e-10 67.8 73 46.6
Zm00001eb264710 Zea mays HOM05D005641 ORTHO05D007953 1.6e-09 67.0 40 72.5
Nitab4.5_0013410g0010 Nicotiana tabacum HOM05D005641 ORTHO05D007953 1.8e-08 63.5 40 67.5
Cfa004644 Carpinus fangiana HOM05D005641 ORTHO05D002074 2.5e-07 59.7 39 66.7
ATR0019G033 Amborella trichopoda HOM05D005641 ORTHO05D007953 5.7e-07 58.5 37 64.9
Nitab4.5_0003335g0050 Nicotiana tabacum HOM05D002499 ORTHO05D002812 2.8e-06 56.2 61 37.7
Peaxi162Scf00023g01330 Petunia axillaris HOM05D002499 ORTHO05D002812 8.2e-06 54.7 61 36.1


User provided reference genes

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