Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0033768 Camellia sinensis var. sinensis HOM05D004108 ORTHO05D004849 9.1e-30 132.9 66 100.0
Rhsim07G0240700 Rhododendron simsii HOM05D004108 ORTHO05D004849 1.3e-15 85.9 58 70.7
RhsimUnG0051600 Rhododendron simsii HOM05D004108 ORTHO05D004849 1.3e-15 85.9 58 70.7
CSS0043508 Camellia sinensis var. sinensis HOM05D004108 ORTHO05D004849 4.9e-15 84.0 66 66.7
CSS0044578 Camellia sinensis var. sinensis HOM05D004108 ORTHO05D004849 4.9e-15 84.0 66 66.7
Rhsim06G0031200 Rhododendron simsii HOM05D004108 ORTHO05D004849 4.9e-15 84.0 58 74.1
Actinidia22531 Actinidia chinensis HOM05D004108 ORTHO05D004849 1.1e-14 82.8 59 72.9
Actinidia38001 Actinidia chinensis HOM05D004108 ORTHO05D004849 1.1e-14 82.8 62 61.3
Sabra05G0176500 Salix brachista HOM05D004108 ORTHO05D004849 3.1e-14 81.3 52 71.2
Rhsim06G0031500 Rhododendron simsii HOM05D004108 ORTHO05D004849 5.4e-14 80.5 58 69.0
MSTRG.24284 Avicennia marina HOM05D004108 ORTHO05D004849 7.0e-14 80.1 58 67.2
Glyma.14G073200 Glycine max HOM05D004108 ORTHO05D004849 1.2e-13 79.3 52 69.2
TPR.G20143 Trifolium pratense HOM05D004108 ORTHO05D004849 1.2e-13 79.3 52 69.2
Potri.005G228600 Populus trichocarpa HOM05D004108 ORTHO05D004849 1.6e-13 79.0 56 64.3
Ciclev10002766m.g Citrus clementina HOM05D004108 ORTHO05D004849 2.0e-13 78.6 50 70.0
Medtr3g111970 Medicago truncatula HOM05D004108 ORTHO05D004849 2.0e-13 78.6 52 65.4
Oeu007023.1 Olea europaea HOM05D004108 ORTHO05D004849 2.7e-13 78.2 56 66.1
TAR381G0780 Trochodendron aralioides HOM05D004108 ORTHO05D004849 2.7e-13 78.2 50 74.0
Lalb_Chr08g0245901 Lupinus albus HOM05D004108 ORTHO05D004849 3.5e-13 77.8 52 65.4
Duzib093G0346 Durio zibethinus HOM05D004108 ORTHO05D004849 5.9e-13 77.0 60 63.3
Thecc.08G029500 Theobroma cacao HOM05D004108 ORTHO05D004849 5.9e-13 77.0 60 61.7
ClCG08G014950 Citrullus lanatus HOM05D004108 ORTHO05D004849 7.8e-13 76.6 50 68.0
Glyma.06G031000 Glycine max HOM05D004108 ORTHO05D004849 7.8e-13 76.6 52 69.2
Sed0024175 Sechium edule HOM05D004108 ORTHO05D004849 7.8e-13 76.6 50 68.0
Lj5g0010725 Lotus japonicus HOM05D004108 ORTHO05D004849 1.0e-12 76.3 52 63.5
Nitab4.5_0001759g0080 Nicotiana tabacum HOM05D004108 ORTHO05D004849 1.0e-12 76.3 61 60.7
Psat6g008240 Pisum sativum HOM05D004108 ORTHO05D004849 1.0e-12 76.3 65 56.9
Ca_13362_v3 Cicer arietinum L. HOM05D004108 ORTHO05D004849 1.3e-12 75.9 52 65.4
Hma1.2p1_0203F.1_g086230 Hydrangea macrophylla HOM05D004108 ORTHO05D004849 1.3e-12 75.9 52 67.3
Sc02g0005700 Simmondsia chinensis HOM05D004108 ORTHO05D004849 1.3e-12 75.9 59 61.0
Ca_15505_v3 Cicer arietinum L. HOM05D004108 ORTHO05D004849 1.7e-12 75.5 52 61.5
TWI56G1092 Tripterygium wilfordii HOM05D004108 ORTHO05D004849 1.7e-12 75.5 50 68.0
Glyma.17G251800 Glycine max HOM05D004108 ORTHO05D004849 2.3e-12 75.1 61 59.0
Gohir.A05G192800 Gossypium hirsutum HOM05D004108 ORTHO05D004849 2.3e-12 75.1 60 61.7
Gohir.D05G196000 Gossypium hirsutum HOM05D004108 ORTHO05D004849 2.3e-12 75.1 60 61.7
Gorai.009G200900 Gossypium raimondii HOM05D004108 ORTHO05D004849 2.3e-12 75.1 60 61.7
Cc10_g02670 Coffea canephora HOM05D004108 ORTHO05D004849 2.9e-12 74.7 58 60.3
DCAR_019539 Daucus carota HOM05D001676 ORTHO05D001539 2.9e-12 74.7 50 66.0
Dinv36099 Davidia involucrata HOM05D004108 ORTHO05D004849 2.9e-12 74.7 48 70.8
Duzib116G0345 Durio zibethinus HOM05D004108 ORTHO05D004849 2.9e-12 74.7 49 73.5
Manes.18G023000 Manihot esculenta HOM05D004108 ORTHO05D004849 2.9e-12 74.7 50 64.0
ATR0568G230 Amborella trichopoda HOM05D004108 ORTHO05D004849 3.9e-12 74.3 64 54.7
MELO3C010952.2 Cucumis melo HOM05D004108 ORTHO05D004849 3.9e-12 74.3 50 66.0
Nitab4.5_0002224g0100 Nicotiana tabacum HOM05D004108 ORTHO05D004849 3.9e-12 74.3 61 59.0
MSTRG.22304 Avicennia marina HOM05D004108 ORTHO05D004849 5.0e-12 73.9 50 68.0
CsaV3_2G028830 Cucumis sativus L. HOM05D004108 ORTHO05D004849 5.0e-12 73.9 50 64.0
Medtr1g022395 Medicago truncatula HOM05D004108 ORTHO05D004849 5.0e-12 73.9 52 65.4
Glyma.04G030900 Glycine max HOM05D004108 ORTHO05D004849 6.6e-12 73.6 52 67.3
VMungo0647G0771 Vigna mungo HOM05D004108 ORTHO05D004849 6.6e-12 73.6 50 66.0
Phvul.001G013200 Phaseolus vulgaris HOM05D004108 ORTHO05D004849 8.6e-12 73.2 50 66.0
Sc15g0007040 Simmondsia chinensis HOM05D004108 ORTHO05D004849 8.6e-12 73.2 47 68.1
THA.LOC104811375 Tarenaya hassleriana HOM05D004108 ORTHO05D004849 8.6e-12 73.2 53 67.9
arahy.Tifrunner.gnm1.ann1.KZM1SZ Arachis hypogaea HOM05D004108 ORTHO05D004849 1.5e-11 72.4 52 67.3
arahy.Tifrunner.gnm1.ann1.RL39CN Arachis hypogaea HOM05D004108 ORTHO05D004849 1.5e-11 72.4 52 67.3
Solyc04g080540.2 Solanum lycopersicum HOM05D004108 ORTHO05D004849 1.5e-11 72.4 61 55.7
CiPaw.15G080700 Carya illinoinensis HOM05D004108 ORTHO05D004849 1.9e-11 72.0 49 67.3
Haze_17929 Corylus avellana HOM05D004108 ORTHO05D004849 1.9e-11 72.0 52 63.5
Migut.N00486 Erythranthe guttata HOM05D004108 ORTHO05D004849 1.9e-11 72.0 47 66.0
Sopen04g034130 Solanum pennellii HOM05D004108 ORTHO05D004849 1.9e-11 72.0 61 55.7
SGA_v2.0_scaffold326G48731 Striga asiatica HOM05D004108 ORTHO05D004849 1.9e-11 72.0 59 54.2
AUR62003937 Chenopodium quinoa HOM05D004108 ORTHO05D004849 2.5e-11 71.6 50 62.0
AUR62014477 Chenopodium quinoa HOM05D004108 ORTHO05D004849 2.5e-11 71.6 50 62.0
AUR62014478 Chenopodium quinoa HOM05D004108 ORTHO05D004849 2.5e-11 71.6 50 62.0
Gohir.D01G103300 Gossypium hirsutum HOM05D004108 ORTHO05D004849 2.5e-11 71.6 49 65.3
VMungo1309G0255 Vigna mungo HOM05D004108 ORTHO05D004849 2.5e-11 71.6 52 65.4
EL10Ac1g00610 Beta vulgaris HOM05D004108 ORTHO05D004849 3.3e-11 71.2 52 57.7
Gohir.A01G114900 Gossypium hirsutum HOM05D004108 ORTHO05D004849 3.3e-11 71.2 49 63.3
PGSC0003DMG400003688 Solanum tuberosum HOM05D004108 ORTHO05D004849 3.3e-11 71.2 61 55.7
ClCG05G018840 Citrullus lanatus HOM05D004108 ORTHO05D004849 5.6e-11 70.5 49 65.3
MELO3C003817.2 Cucumis melo HOM05D004108 ORTHO05D004849 5.6e-11 70.5 49 65.3
CsaV3_3G045320 Cucumis sativus L. HOM05D004108 ORTHO05D004849 5.6e-11 70.5 49 65.3
Lj1g0012803 Lotus japonicus HOM05D004108 ORTHO05D004849 5.6e-11 70.5 52 57.7
Glyma.06G031100 Glycine max HOM05D004108 ORTHO05D004849 7.3e-11 70.1 52 61.5
Gorai.002G127100 Gossypium raimondii HOM05D004108 ORTHO05D004849 7.3e-11 70.1 49 63.3
Nn2g14293 Nelumbo nucifera HOM05D004108 ORTHO05D004849 7.3e-11 70.1 61 55.7
GSVIVG01009730001 Vitis vinifera HOM05D004108 ORTHO05D004849 7.3e-11 70.1 47 66.0
PGR083G0993 Punica granatum HOM05D004108 ORTHO05D004849 9.5e-11 69.7 50 68.0
COL.COLO4_26289 Corchorus olitorius HOM05D004108 ORTHO05D004849 1.6e-10 68.9 51 68.6
Cpa.g.sc31.39 Carica papaya HOM05D004108 ORTHO05D004849 2.1e-10 68.6 50 62.0
Potri.002G034500 Populus trichocarpa HOM05D004108 ORTHO05D004849 2.1e-10 68.6 50 60.0
TPR.G12369 Trifolium pratense HOM05D004108 ORTHO05D004849 2.1e-10 68.6 52 63.5
Hma1.2p1_0203F.1_g086240 Hydrangea macrophylla HOM05D004108 ORTHO05D004849 2.8e-10 68.2 70 52.9
Gohir.A05G258800 Gossypium hirsutum HOM05D004108 ORTHO05D004849 4.7e-10 67.4 50 68.0
Phvul.009G058900 Phaseolus vulgaris HOM05D004108 ORTHO05D004849 6.1e-10 67.0 71 54.9
Eucgr.F01582 Eucalyptus grandis HOM05D004108 ORTHO05D004849 1.0e-09 66.2 47 68.1
Psat5g012160 Pisum sativum HOM05D004108 ORTHO05D004849 1.0e-09 66.2 52 59.6
PGSC0003DMG400005376 Solanum tuberosum HOM05D004108 ORTHO05D004849 1.0e-09 66.2 64 50.0
BcaB07g31980 Brassica carinata HOM05D004108 ORTHO05D004849 1.4e-09 65.9 53 54.7
A06p15710 Brassica napus HOM05D004108 ORTHO05D004849 1.4e-09 65.9 55 52.7
BcaC05g25839 Brassica carinata HOM05D004108 ORTHO05D004849 1.8e-09 65.5 53 54.7
BolC5t30510H Brassica oleracea HOM05D004108 ORTHO05D004849 1.8e-09 65.5 53 54.7
DCAR_020978 Daucus carota HOM05D004108 ORTHO05D004849 1.8e-09 65.5 51 56.9
ECA246G2053 Erigeron canadensis HOM05D004108 ORTHO05D004849 1.8e-09 65.5 53 52.8
CDE02G0765 Ceratophyllum demersum HOM05D004108 ORTHO05D004849 2.3e-09 65.1 62 51.6
Cfa018174 Carpinus fangiana HOM05D004108 ORTHO05D004849 3.1e-09 64.7 48 60.4
Gohir.D05G260600 Gossypium hirsutum HOM05D004108 ORTHO05D004849 3.1e-09 64.7 50 64.0
Peaxi162Scf00020g01711 Petunia axillaris HOM05D004108 ORTHO05D004849 3.1e-09 64.7 53 60.4
BraA06t24680Z Brassica rapa HOM05D004108 ORTHO05D004849 4.0e-09 64.3 55 50.9
HanXRQChr05g0156841 Helianthus annuus HOM05D004108 ORTHO05D004849 4.0e-09 64.3 44 59.1
Sp1g17400 Schrenkiella parvula HOM05D004108 ORTHO05D004849 4.0e-09 64.3 68 48.5
Sed0010517 Sechium edule HOM05D004108 ORTHO05D004849 4.0e-09 64.3 49 61.2
C05p18030 Brassica napus HOM05D004108 ORTHO05D004849 5.2e-09 63.9 53 52.8
Gorai.009G272400 Gossypium raimondii HOM05D004108 ORTHO05D004849 5.2e-09 63.9 50 64.0
Thhalv10009139m.g Eutrema salsugineum HOM05D004108 ORTHO05D004849 6.8e-09 63.5 55 54.5
Actinidia29817 Actinidia chinensis HOM05D004108 ORTHO05D004849 8.9e-09 63.2 40 65.0
FAN20G2373 Fragaria x ananassa HOM05D004108 ORTHO05D004849 8.9e-09 63.2 62 51.6
Lsat_1_v5_gn_5_27881 Lactuca sativa HOM05D004108 ORTHO05D004849 8.9e-09 63.2 65 46.2
CARHR020100 Cardamine hirsuta HOM05D004108 ORTHO05D004849 1.2e-08 62.8 53 52.8
Sabra02G0027700 Salix brachista HOM05D004108 ORTHO05D004849 1.2e-08 62.8 47 55.3
Hund26890 Selenicereus undatus HOM05D004108 ORTHO05D004849 1.2e-08 62.8 50 54.0
Hund29908 Selenicereus undatus HOM05D004108 ORTHO05D004849 1.2e-08 62.8 50 54.0
Aqoxy5G01593 Aquilegia oxysepala HOM05D004108 ORTHO05D004849 2.6e-08 61.6 49 63.3
Lalb_Chr14g0369381 Lupinus albus HOM05D004108 ORTHO05D004849 2.6e-08 61.6 52 59.6
Atru.chr13.446 Acer truncatum HOM05D004108 ORTHO05D004849 3.4e-08 61.2 51 54.9
AT1G19530 Arabidopsis thaliana HOM05D004108 ORTHO05D004849 3.4e-08 61.2 69 49.3
Carub.0001s1910 Capsella rubella HOM05D004108 ORTHO05D004849 3.4e-08 61.2 53 52.8
unitig_899.g15617 Utricularia gibba HOM05D004108 ORTHO05D004849 3.4e-08 61.2 53 56.6
QL02p009008 Quercus lobata HOM05D004108 ORTHO05D004849 4.4e-08 60.8 45 60.0
FAN15G0289 Fragaria x ananassa HOM05D004108 ORTHO05D004849 5.8e-08 60.5 44 65.9
HPP92_003110 Vanilla planifolia HOM05D004108 ORTHO05D004849 7.5e-08 60.1 50 54.0
CANSAT25G1850 Cannabis sativa HOM05D004108 ORTHO05D004849 9.8e-08 59.7 54 55.6
CDE06G1682 Ceratophyllum demersum HOM05D004108 ORTHO05D004849 1.7e-07 58.9 62 48.4
CANSAT25G0460 Cannabis sativa HOM05D004108 ORTHO05D004849 2.9e-07 58.2 53 54.7
AL1G32280 Arabidopsis lyrata HOM05D004108 ORTHO05D004849 3.7e-07 57.8 69 44.9
Aa31LG7G4180 Aethionema arabicum HOM05D004108 ORTHO05D004849 4.9e-07 57.4 65 44.6
AagrBONN_evm.TU.Sc2ySwM_344.1816 Anthoceros agrestis HOM05D004108 ORTHO05D004849 4.9e-07 57.4 47 61.7
arahy.Tifrunner.gnm1.ann1.FG8SZ8 Arachis hypogaea HOM05D004108 ORTHO05D004849 6.4e-07 57.0 42 59.5
FAN27G1128 Fragaria x ananassa HOM05D004108 ORTHO05D004849 2.4e-06 55.1 56 50.0
SEGI_30411 Sequoiadendron giganteum HOM05D004108 ORTHO05D004849 2.4e-06 55.1 49 53.1
PSO541G2330 Papaver somniferum HOM05D004108 ORTHO05D004849 3.2e-06 54.7 44 59.1
PSO675G8146 Papaver somniferum HOM05D004108 ORTHO05D004849 3.2e-06 54.7 44 59.1
arahy.Tifrunner.gnm1.ann1.9Q97AW Arachis hypogaea HOM05D004108 ORTHO05D004849 4.1e-06 54.3 41 58.5
FvH4_2g39630 Fragaria vesca HOM05D004108 ORTHO05D004849 7.0e-06 53.5 60 50.0
SEGI_02312 Sequoiadendron giganteum HOM05D004108 ORTHO05D004849 7.0e-06 53.5 48 52.1
SEGI_15325 Sequoiadendron giganteum HOM05D004108 ORTHO05D004849 7.0e-06 53.5 48 52.1
HPP92_010562 Vanilla planifolia HOM05D004108 ORTHO05D004849 9.2e-06 53.1 51 54.9


User provided reference genes

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