Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0033735 Camellia sinensis var. sinensis HOM05D004937 ORTHO05D006414 1.2e-250 869.4 442 100.0
vmacro15793 Vaccinium macrocarpon HOM05D004937 ORTHO05D006414 1.9e-179 632.9 426 76.8
Rhsim02G0106300 Rhododendron simsii HOM05D004937 ORTHO05D006414 1.5e-176 623.2 439 73.8
GSVIVG01012711001 Vitis vinifera HOM05D004937 ORTHO05D000904 1.6e-175 619.8 433 74.4
Nn1g07169 Nelumbo nucifera HOM05D004937 ORTHO05D006414 2.3e-169 599.4 449 68.6
QL05p072835 Quercus lobata HOM05D004937 ORTHO05D006414 5.7e-168 594.7 425 72.9
Cc09_g01540 Coffea canephora HOM05D004937 ORTHO05D000904 9.4e-163 577.4 429 69.5
TWI63G0901 Tripterygium wilfordii HOM05D004937 ORTHO05D006414 1.6e-162 576.6 471 66.0
Haze_06813 Corylus avellana HOM05D004937 ORTHO05D006414 2.1e-162 576.2 416 71.6
CiPaw.09G093200 Carya illinoinensis HOM05D004937 ORTHO05D006414 4.7e-162 575.1 415 71.8
CANSAT56G3877 Cannabis sativa HOM05D004937 ORTHO05D006414 3.3e-160 568.9 432 66.9
TAR624G0274 Trochodendron aralioides HOM05D004937 ORTHO05D006414 2.0e-157 559.7 420 71.7
Lj1A1232T94 Lonicera japonica HOM05D004937 ORTHO05D006414 2.6e-157 559.3 438 67.1
Manes.16G005800 Manihot esculenta HOM05D004937 ORTHO05D006414 1.0e-156 557.4 440 65.5
Thecc.06G222700 Theobroma cacao HOM05D004937 ORTHO05D006414 1.1e-155 553.9 430 66.3
Prupe.4G019000 Prunus persica HOM05D004937 ORTHO05D006414 1.4e-155 553.5 459 64.3
DCAR_024931 Daucus carota HOM05D004937 ORTHO05D006414 3.0e-153 545.8 420 66.7
Potri.004G010400 Populus trichocarpa HOM05D004937 ORTHO05D006414 1.1e-152 543.9 477 61.2
Sabra04G0005400 Salix brachista HOM05D004937 ORTHO05D006414 3.3e-152 542.3 515 59.2
Eucgr.D01342 Eucalyptus grandis HOM05D004937 ORTHO05D006414 4.4e-152 542.0 419 64.7
Peaxi162Scf00394g00019 Petunia axillaris HOM05D004937 ORTHO05D006414 9.7e-152 540.8 442 64.9
Ciclev10014440m.g Citrus clementina HOM05D004937 ORTHO05D006414 1.7e-151 540.0 415 68.2
Hma1.2p1_3370F.1_g335650 Hydrangea macrophylla HOM05D004937 ORTHO05D006414 1.7e-151 540.0 416 70.2
PGR042G1615 Punica granatum HOM05D004937 ORTHO05D006414 1.7e-151 540.0 474 61.6
MD10G1323300 Malus domestica HOM05D004937 ORTHO05D006414 2.8e-151 539.3 477 60.8
PSO541G5924 Papaver somniferum HOM05D004937 ORTHO05D006414 6.3e-151 538.1 430 68.8
Cpa.g.sc152.26 Carica papaya HOM05D004937 ORTHO05D006414 1.4e-150 537.0 420 66.7
COL.COLO4_31792 Corchorus olitorius HOM05D004937 ORTHO05D006414 9.1e-150 534.3 419 66.8
Peaxi162Scf00307g01425 Petunia axillaris HOM05D004937 ORTHO05D006414 1.6e-149 533.5 442 63.8
Glyma.07G261700 Glycine max HOM05D004937 ORTHO05D006414 2.0e-149 533.1 432 64.1
RcHm_v2.0_Chr5g0002731 Rosa chinensis HOM05D004937 ORTHO05D006414 1.0e-148 530.8 493 58.4
Glyma.17G012400 Glycine max HOM05D004937 ORTHO05D006414 1.7e-148 530.0 415 65.5
PSO675G1521 Papaver somniferum HOM05D004937 ORTHO05D006414 1.7e-148 530.0 428 67.8
Phvul.003G080000 Phaseolus vulgaris HOM05D004937 ORTHO05D006414 6.5e-148 528.1 432 63.9
PGSC0003DMG400019871 Solanum tuberosum HOM05D004937 ORTHO05D006414 9.4e-147 524.2 455 60.7
PSO675G7903 Papaver somniferum HOM05D004937 ORTHO05D006414 1.2e-146 523.9 428 66.8
MELO3C002448.2 Cucumis melo HOM05D004937 ORTHO05D006414 1.0e-145 520.8 447 60.2
arahy.Tifrunner.gnm1.ann1.L1792D Arachis hypogaea HOM05D004937 ORTHO05D006414 1.4e-145 520.4 444 64.6
Nitab4.5_0000005g0300 Nicotiana tabacum HOM05D004937 ORTHO05D006414 1.4e-145 520.4 476 60.3
Nitab4.5_0011734g0010 Nicotiana tabacum HOM05D004937 ORTHO05D006414 1.4e-145 520.4 470 60.4
PSO541G2704 Papaver somniferum HOM05D004937 ORTHO05D006414 1.4e-145 520.4 428 66.1
Sopen02g011270 Solanum pennellii HOM05D004937 ORTHO05D006414 3.0e-145 519.2 456 60.7
Gorai.010G252100 Gossypium raimondii HOM05D004937 ORTHO05D006414 5.2e-145 518.5 443 60.5
Gohir.D06G214000 Gossypium hirsutum HOM05D004937 ORTHO05D006414 6.8e-145 518.1 421 62.5
Solyc02g032870.4 Solanum lycopersicum HOM05D004937 ORTHO05D006414 5.7e-144 515.0 461 59.9
CsaV3_1G010670 Cucumis sativus L. HOM05D004937 ORTHO05D006414 1.1e-142 510.8 429 61.1
Gohir.A06G207300 Gossypium hirsutum HOM05D004937 ORTHO05D006414 1.1e-142 510.8 421 61.8
Lj4g0022599 Lotus japonicus HOM05D004937 ORTHO05D006414 1.1e-142 510.8 461 58.4
FvH4_3g01860 Fragaria vesca HOM05D004937 ORTHO05D006414 2.4e-142 509.6 500 55.4
VMungo1215G2760 Vigna mungo HOM05D004937 ORTHO05D006414 1.2e-141 507.3 442 60.6
arahy.Tifrunner.gnm1.ann1.VWCB5J Arachis hypogaea HOM05D004937 ORTHO05D006414 5.9e-141 505.0 444 63.5
FAN21G0664 Fragaria x ananassa HOM05D004937 ORTHO05D006414 1.0e-140 504.2 479 56.8
MSTRG.15996 Avicennia marina HOM05D004937 ORTHO05D006414 2.2e-140 503.1 505 55.0
Aqoxy1G02086 Aquilegia oxysepala HOM05D004937 ORTHO05D006414 1.9e-139 500.0 514 52.7
DCAR_028195 Daucus carota HOM05D004937 ORTHO05D006414 1.6e-138 496.9 447 59.3
Sc24g0000210 Simmondsia chinensis HOM05D004937 ORTHO05D006414 6.1e-138 495.0 485 53.0
Lalb_Chr12g0196051 Lupinus albus HOM05D004937 ORTHO05D006414 8.0e-138 494.6 477 58.3
Medtr4g132300 Medicago truncatula HOM05D004937 ORTHO05D006414 1.4e-137 493.8 449 56.6
Migut.M01330 Erythranthe guttata HOM05D004937 ORTHO05D000904 6.8e-137 491.5 479 56.4
Sed0026378 Sechium edule HOM05D004937 ORTHO05D006414 6.8e-137 491.5 413 62.5
Lsat_1_v5_gn_7_16360 Lactuca sativa HOM05D004937 ORTHO05D006414 1.2e-136 490.7 452 60.0
HanXRQChr15g0470651 Helianthus annuus HOM05D004937 ORTHO05D006414 3.4e-136 489.2 465 57.6
SalBow8G2768 Salvia bowleyana HOM05D004937 ORTHO05D006414 3.7e-135 485.7 468 55.6
HPP92_001597 Vanilla planifolia HOM05D004937 ORTHO05D006414 1.1e-134 484.2 417 60.7
HPP92_001591 Vanilla planifolia HOM05D004937 ORTHO05D006414 1.6e-133 480.3 417 60.2
AL1G22990 Arabidopsis lyrata HOM05D004937 ORTHO05D006414 4.7e-130 468.8 425 59.3
Hund23457 Selenicereus undatus HOM05D004937 ORTHO05D006414 3.0e-129 466.1 530 50.6
THA.LOC104809500 Tarenaya hassleriana HOM05D004937 ORTHO05D006414 1.2e-128 464.2 416 59.9
AT1G11800 Arabidopsis thaliana HOM05D004937 ORTHO05D006414 1.5e-128 463.8 422 60.2
ECA236G0630 Erigeron canadensis HOM05D004937 ORTHO05D006414 7.5e-128 461.5 444 56.5
Thhalv10006713m.g Eutrema salsugineum HOM05D004937 ORTHO05D000904 1.4e-126 457.2 422 59.0
CARHR012140 Cardamine hirsuta HOM05D004937 ORTHO05D006414 1.8e-126 456.8 422 58.3
Carub.0001s1147 Capsella rubella HOM05D004937 ORTHO05D006414 9.2e-126 454.5 426 58.0
Aa31LG1G2970 Aethionema arabicum HOM05D004937 ORTHO05D006414 1.9e-123 446.8 421 57.2
EL10Ac8g20076 Beta vulgaris HOM05D004937 ORTHO05D006414 9.5e-123 444.5 529 49.0
Psat4g006200 Pisum sativum HOM05D004937 ORTHO05D006414 2.8e-122 443.0 304 69.7
TPR.G22185 Trifolium pratense HOM05D004937 ORTHO05D006414 4.7e-122 442.2 271 76.0
Sp1g10430 Schrenkiella parvula HOM05D004937 ORTHO05D006414 1.0e-121 441.0 421 57.5
AUR62021933 Chenopodium quinoa HOM05D004937 ORTHO05D006414 1.8e-121 440.3 528 48.1
Ca_21076_v3 Cicer arietinum L. HOM05D004937 ORTHO05D006414 1.8e-121 440.3 316 69.0
BcaB08g37429 Brassica carinata HOM05D004937 ORTHO05D006414 3.1e-121 439.5 427 55.5
unitig_748.g7590 Utricularia gibba HOM05D004937 ORTHO05D006414 5.8e-120 435.3 444 50.9
BraA09t41776Z Brassica rapa HOM05D004937 ORTHO05D006414 1.3e-119 434.1 428 56.1
C08p47960 Brassica napus HOM05D004937 ORTHO05D006414 6.4e-119 431.8 419 56.3
BolC8t52333H Brassica oleracea HOM05D004937 ORTHO05D006414 6.4e-119 431.8 419 56.1
BcaC07g41758 Brassica carinata HOM05D004937 ORTHO05D006414 4.1e-118 429.1 417 56.4
A09p64340 Brassica napus HOM05D004937 ORTHO05D007797 3.0e-116 422.9 422 55.5
Haze_06812 Corylus avellana HOM05D004937 ORTHO05D006414 5.0e-116 422.2 267 74.2
Os12g0414900 Oryza sativa ssp. japonica HOM05D004937 ORTHO05D006414 5.0e-116 422.2 362 58.0
QL05p072858 Quercus lobata HOM05D004937 ORTHO05D006414 4.3e-115 419.1 269 74.0
CDE02G2441 Ceratophyllum demersum HOM05D004937 ORTHO05D006414 4.7e-114 415.6 426 52.8
ATR0794G089 Amborella trichopoda HOM05D004937 ORTHO05D006414 5.8e-112 408.7 271 67.5
AUR62012723 Chenopodium quinoa HOM05D004937 ORTHO05D006414 9.8e-112 407.9 273 69.2
PSO017G1772 Papaver somniferum HOM05D004937 ORTHO05D006414 1.6e-109 400.6 320 61.9
Dinv13907 Davidia involucrata HOM05D004937 ORTHO05D006414 2.5e-107 393.3 347 55.3
Dinv20060 Davidia involucrata HOM05D004937 ORTHO05D006414 7.3e-107 391.7 284 67.6
SHI02217 Sapria himalayana HOM05D004937 ORTHO05D006414 2.1e-106 390.2 513 46.0
Potri.004G010900 Populus trichocarpa HOM05D004937 ORTHO05D006414 4.7e-106 389.0 314 63.1
Zm00001eb043220 Zea mays HOM05D004937 ORTHO05D006414 1.4e-105 387.5 265 66.4
HanXRQChr05g0129391 Helianthus annuus HOM05D004937 ORTHO05D006414 1.8e-105 387.1 272 66.9
QL05p072840 Quercus lobata HOM05D004937 ORTHO05D006414 1.5e-104 384.0 271 67.5
SEGI_33731 Sequoiadendron giganteum HOM05D004937 ORTHO05D006414 3.4e-104 382.9 264 66.3
Ah.14g087960 Amaranthus hybridus HOM05D004937 ORTHO05D006414 5.1e-100 369.0 533 43.9
Mapoly0028s0073 Marchantia polymorpha HOM05D004937 ORTHO05D006414 4.4e-96 355.9 267 61.4
Pp3c20_16850 Physcomitrium patens HOM05D004937 ORTHO05D006414 5.4e-94 349.0 266 61.7
Sed0013617 Sechium edule HOM05D004937 ORTHO05D006414 6.0e-93 345.5 229 69.4
SMO361G0593 Selaginella moellendorffii HOM05D004937 ORTHO05D006414 7.3e-91 338.6 267 61.0
CSS0005056 Camellia sinensis var. sinensis HOM05D004937 ORTHO05D006414 2.0e-88 330.5 177 87.0
AagrBONN_evm.TU.Sc2ySwM_368.2060 Anthoceros agrestis HOM05D004937 ORTHO05D006414 9.9e-88 328.2 247 63.6
Migut.M01331 Erythranthe guttata HOM05D004937 ORTHO05D006414 9.3e-86 321.6 274 57.7
CBR_g38366 Chara braunii HOM05D004937 ORTHO05D006414 1.6e-85 320.9 280 56.1
ClCG03G004640 Citrullus lanatus HOM05D004937 ORTHO05D006414 3.0e-84 316.6 193 74.1
HPP92_014181 Vanilla planifolia HOM05D004937 ORTHO05D006414 1.8e-81 307.4 270 57.0
Aqoxy3G03726 Aquilegia oxysepala HOM05D004937 ORTHO05D006414 3.8e-79 299.7 286 52.4
Dinv13904 Davidia involucrata HOM05D004937 ORTHO05D006414 2.1e-77 293.9 207 77.8
Aqoxy4G00762 Aquilegia oxysepala HOM05D004937 ORTHO05D006414 1.1e-75 288.1 275 54.9
Zm00001eb048580 Zea mays HOM05D004937 ORTHO05D006414 3.7e-74 283.1 188 69.7
Dinv13906 Davidia involucrata HOM05D004937 ORTHO05D006414 1.5e-64 251.1 278 46.8
CSS0029720 Camellia sinensis var. sinensis HOM05D004937 ORTHO05D006414 6.5e-63 245.7 272 49.3
Aqoxy5G03390 Aquilegia oxysepala HOM05D004937 ORTHO05D006414 1.1e-62 245.0 219 54.8
CSS0048087 Camellia sinensis var. sinensis HOM05D004937 ORTHO05D006414 2.6e-56 223.8 272 45.6
QL05p072848 Quercus lobata HOM05D004937 ORTHO05D006414 5.0e-55 219.5 136 72.1
ClCG03G004650 Citrullus lanatus HOM05D000020 ORTHO05D000904 4.6e-53 213.0 244 54.5
BcaB08g37427 Brassica carinata HOM05D004937 ORTHO05D006414 3.4e-48 196.8 174 55.7
Psat6g178560 Pisum sativum HOM05D004937 ORTHO05D006414 2.5e-46 190.7 136 67.6
Dinv13905 Davidia involucrata HOM05D004937 ORTHO05D006414 4.2e-46 189.9 99 85.9
Mapoly0074s0008 Marchantia polymorpha HOM05D004937 ORTHO05D006414 2.1e-45 187.6 253 41.9
Cre06.g305050 Chlamydomonas reinhardtii HOM05D004937 ORTHO05D006414 2.3e-44 184.1 309 36.6
BcaB08g37425 Brassica carinata HOM05D004937 ORTHO05D006414 4.8e-42 176.4 133 62.4
BcaB08g37428 Brassica carinata HOM05D004937 ORTHO05D006414 6.5e-39 166.0 227 47.1
PRCOL_00004553 Prasinoderma coloniale HOM05D004937 ORTHO05D006414 3.6e-37 160.2 290 35.9
MCO11G820 Micromonas commoda HOM05D004937 ORTHO05D006414 2.3e-36 157.5 297 35.7
Aqoxy3G02634 Aquilegia oxysepala HOM05D004937 ORTHO05D006414 2.6e-35 154.1 160 52.5
Lj2C267G4 Lonicera japonica HOM05D004937 ORTHO05D006414 5.0e-31 139.8 98 63.3
SGA_v2.0_scaffold4G01909 Striga asiatica HOM05D004937 ORTHO05D006414 5.0e-31 139.8 261 41.8
PGSC0003DMG400026496 Solanum tuberosum HOM05D004937 ORTHO05D006414 5.5e-30 136.3 79 79.7
PRCOL_00006577 Prasinoderma coloniale HOM05D004937 ORTHO05D006414 1.4e-28 131.7 300 33.3
AagrBONN_evm.TU.Sc2ySwM_368.2061 Anthoceros agrestis HOM05D004937 ORTHO05D006414 4.0e-28 130.2 119 54.6
Cre06.g305250 Chlamydomonas reinhardtii HOM05D004937 ORTHO05D006414 2.6e-27 127.5 323 30.7
Dinv30719 Davidia involucrata HOM05D004937 ORTHO05D006414 1.3e-15 88.6 81 53.1
Os10g0401100 Oryza sativa ssp. japonica HOM05D004937 ORTHO05D006414 8.6e-15 85.9 55 63.6
FAN25G1168 Fragaria x ananassa HOM05D004937 ORTHO05D006414 2.5e-14 84.3 129 42.6
TPR.G37060 Trifolium pratense HOM05D004937 ORTHO05D006414 5.6e-14 83.2 178 35.4
Atru.chr10.2244 Acer truncatum HOM05D004937 ORTHO05D006414 5.2e-12 76.6 131 46.6
Os07g0510800 Oryza sativa ssp. japonica HOM05D004937 ORTHO05D006414 1.2e-11 75.5 65 52.3
PSO832G4260 Papaver somniferum HOM05D004937 ORTHO05D002819 1.3e-10 72.0 67 50.7
CSS0014831 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 9.2e-09 65.9 37 75.7
Os07g0510300 Oryza sativa ssp. japonica HOM05D004937 ORTHO05D006414 1.0e-07 62.4 104 35.6


User provided reference genes

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