Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0033137 Camellia sinensis var. sinensis HOM05D005279 ORTHO05D006757 3.4e-236 821.2 402 100.0
CSS0033709 Camellia sinensis var. sinensis HOM05D005279 ORTHO05D006757 3.4e-236 821.2 402 100.0
Rhsim09G0131400 Rhododendron simsii HOM05D005279 ORTHO05D006757 3.1e-189 665.2 409 78.5
Dinv29119 Davidia involucrata HOM05D005279 ORTHO05D006757 7.4e-183 644.0 392 78.6
vmacro10395 Vaccinium macrocarpon HOM05D005279 ORTHO05D006757 1.1e-181 640.2 384 79.2
Nn1g08317 Nelumbo nucifera HOM05D005279 ORTHO05D006757 4.1e-173 611.7 394 71.8
TAR633G0866 Trochodendron aralioides HOM05D005279 ORTHO05D006757 1.1e-170 603.6 391 72.6
Ah.04g158770 Amaranthus hybridus HOM05D005279 ORTHO05D006757 1.8e-168 596.3 396 71.0
Sc09g0001590 Simmondsia chinensis HOM05D005279 ORTHO05D006757 1.3e-166 590.1 396 69.7
Cfa006283 Carpinus fangiana HOM05D005279 ORTHO05D006757 8.2e-166 587.4 390 72.3
Oeu010147.1 Olea europaea HOM05D005279 ORTHO05D006757 7.0e-165 584.3 389 72.8
Aqoxy2G03953 Aquilegia oxysepala HOM05D005279 ORTHO05D006757 2.0e-164 582.8 390 70.3
AUR62000356 Chenopodium quinoa HOM05D005279 ORTHO05D006757 2.0e-164 582.8 391 69.8
Haze_04526 Corylus avellana HOM05D005279 ORTHO05D006757 1.0e-163 580.5 386 72.0
Hund29802 Selenicereus undatus HOM05D005279 ORTHO05D006757 2.2e-163 579.3 394 69.3
Hund29803 Selenicereus undatus HOM05D005279 ORTHO05D006757 2.2e-163 579.3 394 69.3
EL10Ac4g09419 Beta vulgaris HOM05D005279 ORTHO05D006757 6.5e-163 577.8 393 68.7
Prupe.6G359100 Prunus persica HOM05D005279 ORTHO05D006757 3.2e-162 575.5 395 71.4
Oeu040486.2 Olea europaea HOM05D005279 ORTHO05D006757 4.7e-161 571.6 389 71.0
CiPaw.08G116500 Carya illinoinensis HOM05D005279 ORTHO05D006757 1.4e-160 570.1 390 70.5
PSO675G1387 Papaver somniferum HOM05D005279 ORTHO05D006757 5.2e-160 568.2 391 68.3
Atru.chr12.2109 Acer truncatum HOM05D005279 ORTHO05D006757 4.4e-159 565.1 391 68.8
Solyc04g051310.4 Solanum lycopersicum HOM05D005279 ORTHO05D006757 5.7e-159 564.7 396 68.7
arahy.Tifrunner.gnm1.ann1.X9YPPN Arachis hypogaea HOM05D005279 ORTHO05D006757 9.8e-159 563.9 391 69.3
Lalb_Chr19g0126771 Lupinus albus HOM05D005279 ORTHO05D006757 1.7e-158 563.1 390 69.0
MD12G1258400 Malus domestica HOM05D005279 ORTHO05D006757 1.7e-158 563.1 393 67.7
Sopen04g022730 Solanum pennellii HOM05D005279 ORTHO05D006757 2.2e-158 562.8 396 68.4
Eucgr.H01378 Eucalyptus grandis HOM05D005279 ORTHO05D006757 2.8e-158 562.4 391 70.3
Glyma.09G252300 Glycine max HOM05D005279 ORTHO05D006757 2.8e-158 562.4 392 68.9
Migut.F01884 Erythranthe guttata HOM05D005279 ORTHO05D006757 8.3e-158 560.8 395 69.1
TWI23G0564 Tripterygium wilfordii HOM05D005279 ORTHO05D006757 8.3e-158 560.8 392 68.9
Cc09_g03410 Coffea canephora HOM05D005279 ORTHO05D006757 1.1e-157 560.5 391 68.0
Manes.09G184200 Manihot esculenta HOM05D005279 ORTHO05D006757 1.1e-157 560.5 390 67.4
FAN05G0195 Fragaria x ananassa HOM05D005279 ORTHO05D006757 4.1e-157 558.5 394 68.0
FAN02G0830 Fragaria x ananassa HOM05D005279 ORTHO05D006757 5.4e-157 558.1 392 68.1
FvH4_6g00750 Fragaria vesca HOM05D005279 ORTHO05D006757 9.1e-157 557.4 394 67.5
FAN14G2044 Fragaria x ananassa HOM05D005279 ORTHO05D006757 9.1e-157 557.4 394 67.5
Sed0005684 Sechium edule HOM05D005279 ORTHO05D006757 1.2e-156 557.0 392 66.6
FAN09G4620 Fragaria x ananassa HOM05D005279 ORTHO05D006757 1.6e-156 556.6 394 67.8
Glyma.18G240300 Glycine max HOM05D005279 ORTHO05D006757 2.0e-156 556.2 392 68.1
Ca_07964_v3 Cicer arietinum L. HOM05D005279 ORTHO05D006757 1.0e-155 553.9 391 68.0
Ciclev10011262m.g Citrus clementina HOM05D005279 ORTHO05D006757 1.0e-155 553.9 393 67.2
Lsat_1_v5_gn_9_48740 Lactuca sativa HOM05D005279 ORTHO05D006757 1.7e-155 553.1 392 66.8
CANSAT54G1354 Cannabis sativa HOM05D005279 ORTHO05D006757 2.9e-155 552.4 392 67.3
Phvul.008G055900 Phaseolus vulgaris HOM05D005279 ORTHO05D006757 2.9e-155 552.4 392 68.6
Potri.013G087400 Populus trichocarpa HOM05D005279 ORTHO05D006757 2.9e-155 552.4 396 68.2
MSTRG.320 Avicennia marina HOM05D005279 ORTHO05D006757 6.5e-155 551.2 393 68.4
Peaxi162Scf00994g00010 Petunia axillaris HOM05D005279 ORTHO05D006757 6.5e-155 551.2 393 67.9
ClCG11G011000 Citrullus lanatus HOM05D005279 ORTHO05D006757 8.5e-155 550.8 392 65.8
PGR031G1864 Punica granatum HOM05D005279 ORTHO05D006757 1.5e-154 550.1 391 66.5
HanXRQChr05g0156961 Helianthus annuus HOM05D005279 ORTHO05D006757 2.5e-154 549.3 394 66.5
RcHm_v2.0_Chr3g0448231 Rosa chinensis HOM05D005279 ORTHO05D006757 2.5e-154 549.3 395 65.8
VMungo1383G2490 Vigna mungo HOM05D005279 ORTHO05D006757 2.5e-154 549.3 396 67.2
MELO3C008759.2 Cucumis melo HOM05D005279 ORTHO05D006757 7.2e-154 547.7 392 65.8
Sabra13G0070000 Salix brachista HOM05D005279 ORTHO05D006757 1.2e-153 547.0 392 69.1
Medtr7g079510 Medicago truncatula HOM05D005279 ORTHO05D006757 1.6e-153 546.6 391 66.5
Cpa.g.c32193 Carica papaya HOM05D005279 ORTHO05D006757 2.7e-153 545.8 385 68.6
Lsat_1_v5_gn_8_2100 Lactuca sativa HOM05D005279 ORTHO05D006757 3.6e-153 545.4 392 68.1
Lj1g0001090 Lotus japonicus HOM05D005279 ORTHO05D006757 1.0e-152 543.9 391 67.3
CsaV3_2G009490 Cucumis sativus L. HOM05D005279 ORTHO05D006757 2.3e-152 542.7 392 65.1
Hund07324 Selenicereus undatus HOM05D005279 ORTHO05D006757 4.0e-152 542.0 397 64.7
TPR.G32005 Trifolium pratense HOM05D005279 ORTHO05D006757 1.2e-151 540.4 391 67.0
Duzib128G1767 Durio zibethinus HOM05D005279 ORTHO05D006757 3.4e-151 538.9 391 66.8
SalBow6G4947 Salvia bowleyana HOM05D005279 ORTHO05D006757 4.9e-150 535.0 393 67.2
DCAR_023849 Daucus carota HOM05D005279 ORTHO05D006757 8.3e-150 534.3 396 65.7
SGA_v2.0_scaffold122G33172 Striga asiatica HOM05D005279 ORTHO05D006757 1.8e-149 533.1 394 66.0
Aa31LG11G13130 Aethionema arabicum HOM05D005279 ORTHO05D006757 4.1e-149 531.9 394 63.7
THA.LOC104802949 Tarenaya hassleriana HOM05D005279 ORTHO05D006757 5.4e-149 531.6 391 64.5
COL.COLO4_19830 Corchorus olitorius HOM05D005279 ORTHO05D006757 7.0e-149 531.2 391 64.2
Duzib177G0028 Durio zibethinus HOM05D005279 ORTHO05D006757 1.6e-148 530.0 391 65.5
Sed0008551 Sechium edule HOM05D005279 ORTHO05D006757 2.7e-148 529.3 391 63.7
Thhalv10012976m.g Eutrema salsugineum HOM05D005279 ORTHO05D006757 7.7e-148 527.7 391 64.2
AT5G16520 Arabidopsis thaliana HOM05D005279 ORTHO05D006757 1.6e-145 520.0 391 62.7
Lju5221C0T3 Lonicera japonica HOM05D005279 ORTHO05D006757 3.6e-145 518.8 400 65.2
MBI07_g25290_MAGBIO Magnolia biondii HOM05D005279 ORTHO05D006757 3.6e-145 518.8 367 65.7
Sp6g27630 Schrenkiella parvula HOM05D005279 ORTHO05D006757 1.0e-144 517.3 394 62.4
THA.LOC104827466 Tarenaya hassleriana HOM05D005279 ORTHO05D006757 2.3e-144 516.2 381 64.3
Carub.0006s1472 Capsella rubella HOM05D005279 ORTHO05D006757 5.2e-144 515.0 391 62.1
CARHR196710 Cardamine hirsuta HOM05D005279 ORTHO05D006757 1.2e-143 513.8 391 62.7
Gohir.D08G244200 Gossypium hirsutum HOM05D005279 ORTHO05D006757 1.2e-143 513.8 392 63.8
AL6G27470 Arabidopsis lyrata HOM05D005279 ORTHO05D006757 2.0e-143 513.1 391 62.1
C03p09050 Brassica napus HOM05D005279 ORTHO05D006757 9.8e-143 510.8 392 62.0
Gohir.A08G223900 Gossypium hirsutum HOM05D005279 ORTHO05D006757 1.3e-142 510.4 392 63.0
A03p07830 Brassica napus HOM05D005279 ORTHO05D006757 2.2e-142 509.6 392 62.0
BolC3t13400H Brassica oleracea HOM05D005279 ORTHO05D006757 2.2e-142 509.6 392 62.2
Gorai.004G260500 Gossypium raimondii HOM05D005279 ORTHO05D006757 2.9e-142 509.2 392 63.5
HanXRQChr11g0323931 Helianthus annuus HOM05D005279 ORTHO05D006757 8.3e-142 507.7 392 60.2
ATR0609G131 Amborella trichopoda HOM05D005279 ORTHO05D006757 7.8e-140 501.1 393 57.8
SHI13733 Sapria himalayana HOM05D005279 ORTHO05D006757 1.7e-139 500.0 391 63.2
Lj1A580T7 Lonicera japonica HOM05D005279 ORTHO05D006757 2.3e-139 499.6 383 65.3
BcaB01g04978 Brassica carinata HOM05D005279 ORTHO05D006757 1.9e-138 496.5 391 61.4
unitig_26.g8932 Utricularia gibba HOM05D005279 ORTHO05D006757 8.9e-136 487.6 393 62.1
GSVIVG01019132001 Vitis vinifera HOM05D005279 ORTHO05D006757 3.6e-129 465.7 314 68.8
ECA232G1216 Erigeron canadensis HOM05D005279 ORTHO05D006757 8.9e-128 461.1 314 68.5
CDE09G0872 Ceratophyllum demersum HOM05D005279 ORTHO05D006757 5.8e-127 458.4 363 59.8
SEGI_07718 Sequoiadendron giganteum HOM05D005279 ORTHO05D006757 1.3e-123 447.2 393 54.5
ECA233G5391 Erigeron canadensis HOM05D005279 ORTHO05D006757 1.4e-120 437.2 315 64.8
Nitab4.5_0000276g0070 Nicotiana tabacum HOM05D005279 ORTHO05D006757 8.1e-113 411.4 291 67.7
QL01p050313 Quercus lobata HOM05D005279 ORTHO05D006757 1.1e-112 411.0 272 74.3
PGSC0003DMG402016935 Solanum tuberosum HOM05D005279 ORTHO05D006757 1.1e-109 401.0 260 72.3
Nitab4.5_0000456g0100 Nicotiana tabacum HOM05D005279 ORTHO05D006757 1.2e-108 397.5 284 67.6
arahy.Tifrunner.gnm1.ann1.GMHU8S Arachis hypogaea HOM05D005279 ORTHO05D006757 5.6e-106 388.7 391 51.9
Os01g0100500 Oryza sativa ssp. japonica HOM05D005279 ORTHO05D006757 1.5e-103 380.6 383 49.9
Zm00001eb017080 Zea mays HOM05D005279 ORTHO05D006757 1.2e-100 370.9 389 48.3
Zm00001eb334030 Zea mays HOM05D005279 ORTHO05D006757 7.9e-100 368.2 399 47.9
AUR62012181 Chenopodium quinoa HOM05D005279 ORTHO05D006757 1.1e-98 364.4 300 58.7
Hund16011 Selenicereus undatus HOM05D005279 ORTHO05D006757 3.3e-98 362.8 395 47.3
Dinv09865 Davidia involucrata HOM05D005279 ORTHO05D006757 9.9e-95 351.3 209 78.0
EL10Ac2g04762 Beta vulgaris HOM05D005279 ORTHO05D006757 8.4e-94 348.2 302 57.3
CAN.G29.21 Capsicum annuum HOM05D005279 ORTHO05D006757 3.2e-93 346.3 227 69.2
HPP92_025240 Vanilla planifolia HOM05D005279 ORTHO05D006757 2.1e-92 343.6 389 45.2
AUR62006699 Chenopodium quinoa HOM05D005279 ORTHO05D006757 8.7e-91 338.2 243 64.2
Psat3g104240 Pisum sativum HOM05D005279 ORTHO05D006757 2.5e-90 336.7 264 62.1
BraA03t10110Z Brassica rapa HOM05D005279 ORTHO05D006757 1.9e-85 320.5 242 61.6
CDE02G4206 Ceratophyllum demersum HOM05D005279 ORTHO05D006757 6.3e-81 305.4 258 55.4
AagrBONN_evm.TU.Sc2ySwM_228.5255 Anthoceros agrestis HOM05D005279 ORTHO05D006757 6.5e-78 295.4 388 39.9
CDE12G0554 Ceratophyllum demersum HOM05D005279 ORTHO05D006757 1.2e-76 291.2 203 65.5
HPP92_021393 Vanilla planifolia HOM05D005279 ORTHO05D006757 6.3e-73 278.9 395 41.8
Thecc.05G206100 Theobroma cacao HOM05D005279 ORTHO05D006757 1.7e-70 270.8 209 59.3
AUR62022817 Chenopodium quinoa HOM05D005279 ORTHO05D006757 3.5e-55 219.9 380 36.1
Ah.16g102880 Amaranthus hybridus HOM05D005279 ORTHO05D006757 1.0e-51 208.4 196 49.5
Actinidia34772 Actinidia chinensis HOM05D005279 ORTHO05D006757 1.4e-51 208.0 128 74.2
RcHm_v2.0_Chr7g0239281 Rosa chinensis HOM05D005279 ORTHO05D006757 5.9e-47 192.6 133 65.4
RcHm_v2.0_Chr2g0115301 Rosa chinensis HOM05D005279 ORTHO05D006757 1.0e-46 191.8 142 61.3
Actinidia38912 Actinidia chinensis HOM05D005279 ORTHO05D006757 5.7e-42 176.0 102 81.4
Nitab4.5_0000456g0110 Nicotiana tabacum HOM05D005279 ORTHO05D006757 7.7e-39 165.6 123 66.7
Nitab4.5_0000276g0080 Nicotiana tabacum HOM05D005279 ORTHO05D006757 1.1e-37 161.8 123 65.0
Hma1.2p1_0171F.1_g075730 Hydrangea macrophylla HOM05D005279 ORTHO05D006757 1.2e-28 131.7 92 67.4


User provided reference genes

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