Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0033689 Camellia sinensis var. sinensis HOM05D006780 ORTHO05D008455 1.3e-140 503.1 254 100.0
Lj3A891T47 Lonicera japonica HOM05D006780 ORTHO05D008455 1.2e-106 390.2 253 75.1
vmacro06481 Vaccinium macrocarpon HOM05D006780 ORTHO05D008455 2.3e-105 386.0 271 72.0
Lsat_1_v5_gn_8_3841 Lactuca sativa HOM05D006780 ORTHO05D008455 1.9e-104 382.9 253 74.3
Actinidia34294 Actinidia chinensis HOM05D006780 ORTHO05D008455 2.2e-103 379.4 249 73.9
Rhsim03G0219000 Rhododendron simsii HOM05D006780 ORTHO05D008455 3.7e-103 378.6 279 68.5
SalBow2G3389 Salvia bowleyana HOM05D006780 ORTHO05D008455 6.3e-103 377.9 249 72.3
HanXRQChr08g0225871 Helianthus annuus HOM05D006780 ORTHO05D008455 1.1e-102 377.1 254 74.4
Hma1.2p1_0115F.1_g055870 Hydrangea macrophylla HOM05D006780 ORTHO05D008455 1.8e-102 376.3 214 82.7
Actinidia08727 Actinidia chinensis HOM05D006780 ORTHO05D008455 2.0e-101 372.9 249 73.5
Cc02_g00520 Coffea canephora HOM05D006780 ORTHO05D008455 3.4e-101 372.1 252 72.6
Eucgr.K00108 Eucalyptus grandis HOM05D006780 ORTHO05D008455 7.7e-101 370.9 252 71.8
Dinv29183 Davidia involucrata HOM05D006780 ORTHO05D008455 2.2e-100 369.4 247 73.7
Nn6g33682 Nelumbo nucifera HOM05D006780 ORTHO05D008455 1.1e-99 367.1 248 71.8
Nitab4.5_0007683g0020 Nicotiana tabacum HOM05D006780 ORTHO05D008455 1.1e-99 367.1 252 71.4
Migut.F00963 Erythranthe guttata HOM05D006780 ORTHO05D008455 2.5e-99 365.9 249 69.9
Cfa013613 Carpinus fangiana HOM05D006780 ORTHO05D008455 7.2e-99 364.4 249 70.7
MSTRG.17 Avicennia marina HOM05D006780 ORTHO05D008455 1.2e-98 363.6 249 71.1
Thecc.05G208000 Theobroma cacao HOM05D006780 ORTHO05D008455 1.2e-98 363.6 252 71.4
Nitab4.5_0000011g0110 Nicotiana tabacum HOM05D006780 ORTHO05D008455 2.1e-98 362.8 250 71.6
TAR629G2389 Trochodendron aralioides HOM05D006780 ORTHO05D008455 2.1e-98 362.8 251 71.7
SGA_v2.0_scaffold165G38216 Striga asiatica HOM05D006780 ORTHO05D008455 3.6e-98 362.1 250 68.8
TAR636G2448 Trochodendron aralioides HOM05D006780 ORTHO05D008455 3.3e-96 355.5 252 69.0
Atru.chr12.2100 Acer truncatum HOM05D006780 ORTHO05D008455 4.3e-96 355.1 247 68.0
COL.COLO4_34143 Corchorus olitorius HOM05D006780 ORTHO05D008455 5.7e-96 354.8 254 68.9
CiPaw.08G043400 Carya illinoinensis HOM05D006780 ORTHO05D008455 7.4e-96 354.4 254 68.9
QL09p026712 Quercus lobata HOM05D006780 ORTHO05D008455 9.7e-96 354.0 255 68.2
PGR142G1227 Punica granatum HOM05D006780 ORTHO05D008455 1.7e-95 353.2 254 67.3
Ciclev10012613m.g Citrus clementina HOM05D006780 ORTHO05D008455 2.8e-95 352.4 247 68.0
Sopen07g001650 Solanum pennellii HOM05D006780 ORTHO05D008455 8.2e-95 350.9 252 68.3
Solyc07g005550.4 Solanum lycopersicum HOM05D006780 ORTHO05D008455 1.1e-94 350.5 253 67.6
Gohir.A05G389500 Gossypium hirsutum HOM05D006780 ORTHO05D008455 1.8e-94 349.7 220 75.9
Gorai.012G029700 Gossypium raimondii HOM05D006780 ORTHO05D008455 1.8e-94 349.7 252 69.4
Hma1.2p1_0115F.1_g055860 Hydrangea macrophylla HOM05D006780 ORTHO05D008455 2.4e-94 349.4 251 70.5
Hund14300 Selenicereus undatus HOM05D006780 ORTHO05D008455 4.1e-94 348.6 263 62.7
Gohir.D04G027000 Gossypium hirsutum HOM05D006780 ORTHO05D008455 5.3e-94 348.2 252 69.8
CANSAT21G1469 Cannabis sativa HOM05D006780 ORTHO05D008455 5.9e-93 344.7 271 65.7
Manes.09G119100 Manihot esculenta HOM05D006780 ORTHO05D008455 2.9e-92 342.4 247 68.4
vmacro10178 Vaccinium macrocarpon HOM05D006780 ORTHO05D008455 3.2e-91 339.0 296 60.1
Peaxi162Scf00542g00012 Petunia axillaris HOM05D006780 ORTHO05D008455 7.2e-91 337.8 256 65.2
CAN.G160.70 Capsicum annuum HOM05D006780 ORTHO05D008455 1.6e-90 336.7 248 65.3
arahy.Tifrunner.gnm1.ann1.T66758 Arachis hypogaea HOM05D006780 ORTHO05D008455 2.7e-90 335.9 248 65.7
arahy.Tifrunner.gnm1.ann1.T2A0GP Arachis hypogaea HOM05D006780 ORTHO05D008455 6.1e-90 334.7 248 65.3
GSVIVG01024468001 Vitis vinifera HOM05D006780 ORTHO05D008455 6.1e-90 334.7 216 74.1
Gorai.004G260300 Gossypium raimondii HOM05D006780 ORTHO05D008455 1.4e-89 333.6 220 71.8
Gohir.1Z049572 Gossypium hirsutum HOM05D006780 ORTHO05D008455 6.7e-89 331.3 220 71.4
RcHm_v2.0_Chr1g0383391 Rosa chinensis HOM05D006780 ORTHO05D008455 6.7e-89 331.3 220 72.3
Sc07g0007970 Simmondsia chinensis HOM05D006780 ORTHO05D008455 6.7e-89 331.3 232 69.0
Gohir.A08G223700 Gossypium hirsutum HOM05D006780 ORTHO05D008455 2.6e-88 329.3 216 72.2
Sabra04G0017100 Salix brachista HOM05D006780 ORTHO05D008455 2.6e-88 329.3 279 62.4
TWI60G0503 Tripterygium wilfordii HOM05D006780 ORTHO05D008455 3.3e-88 328.9 216 72.2
Ah.12g058490 Amaranthus hybridus HOM05D006780 ORTHO05D008455 7.4e-88 327.8 222 67.6
Rhsim09G0211500 Rhododendron simsii HOM05D006780 ORTHO05D008455 7.4e-88 327.8 315 56.2
FAN03G1919 Fragaria x ananassa HOM05D006780 ORTHO05D008455 9.7e-88 327.4 220 70.9
Potri.004G030100 Populus trichocarpa HOM05D006780 ORTHO05D008455 1.3e-87 327.0 276 62.7
FvH4_7g33420 Fragaria vesca HOM05D006780 ORTHO05D008455 2.8e-87 325.9 220 70.0
DCAR_008997 Daucus carota HOM05D006780 ORTHO05D008455 3.7e-87 325.5 251 62.9
FAN01G1241 Fragaria x ananassa HOM05D006780 ORTHO05D008455 3.7e-87 325.5 220 70.0
FAN10G0287 Fragaria x ananassa HOM05D006780 ORTHO05D008455 6.3e-87 324.7 220 70.0
THA.LOC104805709 Tarenaya hassleriana HOM05D006780 ORTHO05D008455 1.1e-86 323.9 218 70.6
TWI34G0276 Tripterygium wilfordii HOM05D006780 ORTHO05D008455 1.1e-86 323.9 216 71.8
PGSC0003DMG400011181 Solanum tuberosum HOM05D006780 ORTHO05D008455 1.8e-86 323.2 328 52.7
FAN10G2247 Fragaria x ananassa HOM05D006780 ORTHO05D008455 4.1e-86 322.0 220 69.5
Aqoxy3G02533 Aquilegia oxysepala HOM05D006780 ORTHO05D008455 2.6e-85 319.3 250 60.4
CiPaw.07G182200 Carya illinoinensis HOM05D006780 ORTHO05D008455 2.6e-85 319.3 201 76.1
unitig_52.g16857 Utricularia gibba HOM05D006780 ORTHO05D008455 3.5e-85 318.9 216 69.4
Prupe.2G322900 Prunus persica HOM05D006780 ORTHO05D008455 7.7e-85 317.8 250 64.0
ECA233G5194 Erigeron canadensis HOM05D006780 ORTHO05D008455 2.2e-84 316.2 202 75.2
AUR62010478 Chenopodium quinoa HOM05D006780 ORTHO05D008455 2.9e-84 315.8 239 61.9
VMungo1127G1066 Vigna mungo HOM05D006780 ORTHO05D008455 3.8e-84 315.5 199 74.4
MD01G1232400 Malus domestica HOM05D006780 ORTHO05D008455 6.5e-84 314.7 251 63.7
Aa31LG2G2290 Aethionema arabicum HOM05D006780 ORTHO05D008455 8.5e-84 314.3 220 68.6
AUR62030415 Chenopodium quinoa HOM05D006780 ORTHO05D008455 1.5e-83 313.5 216 65.7
ClCG01G004850 Citrullus lanatus HOM05D006780 ORTHO05D008455 7.2e-83 311.2 255 62.7
Sed0025589 Sechium edule HOM05D006780 ORTHO05D008455 2.7e-82 309.3 257 60.7
MD07G1304300 Malus domestica HOM05D006780 ORTHO05D008455 1.4e-81 307.0 251 63.3
MELO3C005448.2 Cucumis melo HOM05D006780 ORTHO05D008455 4.0e-81 305.4 245 62.4
Lj3g0022672 Lotus japonicus HOM05D006780 ORTHO05D008455 5.7e-80 301.6 198 73.2
CsaV3_5G005070 Cucumis sativus L. HOM05D006780 ORTHO05D008455 4.8e-79 298.5 245 60.8
Phvul.011G002600 Phaseolus vulgaris HOM05D006780 ORTHO05D008455 4.8e-79 298.5 223 66.8
AT2G44870 Arabidopsis thaliana HOM05D006780 ORTHO05D008455 1.4e-78 297.0 223 64.1
Thhalv10022468m.g Eutrema salsugineum HOM05D006780 ORTHO05D008455 1.4e-78 297.0 223 64.6
BraA02t06361Z Brassica rapa HOM05D006780 ORTHO05D008455 1.6e-77 293.5 222 64.9
BcaC03g14678 Brassica carinata HOM05D006780 ORTHO05D008455 3.5e-77 292.4 222 64.4
A02p13050 Brassica napus HOM05D006780 ORTHO05D008455 3.5e-77 292.4 222 64.4
BolC2t08258H Brassica oleracea HOM05D006780 ORTHO05D008455 3.5e-77 292.4 222 64.4
CDE02G2736 Ceratophyllum demersum HOM05D006780 ORTHO05D008455 3.5e-77 292.4 254 55.5
Psat7g145160 Pisum sativum HOM05D006780 ORTHO05D008455 4.5e-77 292.0 247 60.3
Glyma.12G002200 Glycine max HOM05D006780 ORTHO05D008455 7.7e-77 291.2 250 59.2
AL2G19830 Arabidopsis lyrata HOM05D006780 ORTHO05D008455 1.0e-76 290.8 219 63.9
Dinv17273 Davidia involucrata HOM05D006780 ORTHO05D008455 1.0e-76 290.8 164 84.1
Medtr4g033475 Medicago truncatula HOM05D006780 ORTHO05D008455 1.0e-76 290.8 247 59.5
Sp5g19750 Schrenkiella parvula HOM05D006780 ORTHO05D008455 1.7e-76 290.0 222 63.5
Glyma.09G234600 Glycine max HOM05D006780 ORTHO05D008455 1.1e-75 287.3 196 68.4
PSO063G3320 Papaver somniferum HOM05D006780 ORTHO05D008455 1.5e-75 287.0 277 55.6
C02p21190 Brassica napus HOM05D006780 ORTHO05D008455 3.2e-75 285.8 224 62.9
PSO782G3414 Papaver somniferum HOM05D006780 ORTHO05D008455 4.2e-75 285.4 281 55.2
BcaB05g24083 Brassica carinata HOM05D006780 ORTHO05D008455 1.2e-74 283.9 228 61.4
CDE11G0765 Ceratophyllum demersum HOM05D006780 ORTHO05D008455 1.6e-74 283.5 258 54.7
Ca_19681_v3 Cicer arietinum L. HOM05D006780 ORTHO05D008455 1.6e-74 283.5 198 68.2
EL10Ac5g12581 Beta vulgaris HOM05D006780 ORTHO05D008455 2.1e-74 283.1 283 50.2
TPR.G31925 Trifolium pratense HOM05D006780 ORTHO05D008455 3.6e-74 282.3 198 68.2
Carub.0002s1056 Capsella rubella HOM05D006780 ORTHO05D008455 4.0e-73 278.9 225 61.3
CDE02G3388 Ceratophyllum demersum HOM05D006780 ORTHO05D008455 6.8e-73 278.1 247 54.7
Duzib128G1164 Durio zibethinus HOM05D006780 ORTHO05D008455 3.8e-68 262.3 257 54.9
CARHR056600 Cardamine hirsuta HOM05D006780 ORTHO05D008455 3.2e-67 259.2 228 57.5
Duzib177G1050 Durio zibethinus HOM05D006780 ORTHO05D008455 8.8e-65 251.1 251 52.6
CDE11G0053 Ceratophyllum demersum HOM05D006780 ORTHO05D008455 2.8e-63 246.1 247 49.4
Zm00001eb024190 Zea mays HOM05D006780 ORTHO05D008455 5.4e-62 241.9 215 53.0
ATR0829G223 Amborella trichopoda HOM05D006780 ORTHO05D008455 2.0e-61 240.0 194 59.3
HPP92_025668 Vanilla planifolia HOM05D006780 ORTHO05D008455 1.5e-56 223.8 254 49.2
Cpa.g.sc39.45 Carica papaya HOM05D006780 ORTHO05D008455 8.6e-44 181.4 146 61.0
CSS0031860 Camellia sinensis var. sinensis HOM05D001955 ORTHO05D001917 4.0e-41 172.6 106 84.0
SMO301G0031 Selaginella moellendorffii HOM05D006780 ORTHO05D008455 1.7e-39 167.2 191 41.4
Pp3c8_4270 Physcomitrium patens HOM05D006780 ORTHO05D008455 1.2e-37 161.0 208 38.5
Mapoly0133s0055 Marchantia polymorpha HOM05D006780 ORTHO05D008455 1.9e-30 137.1 153 41.8
CBR_g642 Chara braunii HOM05D006780 ORTHO05D008455 7.6e-24 115.2 190 33.7
Os10g0569000 Oryza sativa ssp. japonica HOM05D006780 ORTHO05D008455 1.4e-17 94.4 88 52.3
Cre12.g551100 Chlamydomonas reinhardtii HOM05D006780 ORTHO05D008455 7.1e-06 55.5 126 29.4


User provided reference genes

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