Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0033679 Camellia sinensis var. sinensis HOM05D004396 ORTHO05D005272 5.3e-57 224.2 117 100.0
Hma1.2p1_0870F.1_g230890 Hydrangea macrophylla HOM05D004396 ORTHO05D005272 1.7e-55 219.2 117 96.6
Actinidia14779 Actinidia chinensis HOM05D004396 ORTHO05D005272 2.2e-55 218.8 117 98.3
Actinidia18135 Actinidia chinensis HOM05D004396 ORTHO05D005272 5.0e-55 217.6 117 97.4
Dinv25260 Davidia involucrata HOM05D004396 ORTHO05D005272 6.5e-55 217.2 117 96.6
CSS0013599 Camellia sinensis var. sinensis HOM05D004396 ORTHO05D005272 1.1e-54 216.5 117 95.7
CSS0046263 Camellia sinensis var. sinensis HOM05D004396 ORTHO05D005272 1.1e-54 216.5 117 95.7
Peaxi162Scf00170g00812 Petunia axillaris HOM05D004396 ORTHO05D005272 1.1e-54 216.5 117 94.9
Rhsim11G0021700 Rhododendron simsii HOM05D004396 ORTHO05D005272 1.5e-54 216.1 117 96.6
Nitab4.5_0000529g0110 Nicotiana tabacum HOM05D004396 ORTHO05D005272 1.9e-54 215.7 117 93.2
Solyc08g076460.3 Solanum lycopersicum HOM05D004396 ORTHO05D005272 2.5e-54 215.3 117 94.9
Sopen08g025040 Solanum pennellii HOM05D004396 ORTHO05D005272 2.5e-54 215.3 117 94.9
PGSC0003DMG400014795 Solanum tuberosum HOM05D004396 ORTHO05D005272 2.5e-54 215.3 117 94.9
CAN.G726.24 Capsicum annuum HOM05D004396 ORTHO05D005272 4.2e-54 214.5 117 94.0
Hma1.2p1_0890F.1_g233090 Hydrangea macrophylla HOM05D004396 ORTHO05D005272 4.2e-54 214.5 117 94.0
Thecc.03G310300 Theobroma cacao HOM05D004396 ORTHO05D005272 7.2e-54 213.8 117 95.7
Dinv29003 Davidia involucrata HOM05D004396 ORTHO05D005272 2.1e-53 212.2 117 95.7
HanXRQChr13g0414241 Helianthus annuus HOM05D004396 ORTHO05D005272 2.1e-53 212.2 118 94.9
vmacro00278 Vaccinium macrocarpon HOM05D004396 ORTHO05D005272 2.7e-53 211.8 117 94.0
QL12p001650 Quercus lobata HOM05D004396 ORTHO05D005272 4.7e-53 211.1 116 94.0
Nn3g19387 Nelumbo nucifera HOM05D004396 ORTHO05D005272 6.1e-53 210.7 113 96.5
Rhsim07G0132100 Rhododendron simsii HOM05D004396 ORTHO05D005272 6.1e-53 210.7 117 95.7
Nitab4.5_0000556g0250 Nicotiana tabacum HOM05D004396 ORTHO05D005272 1.0e-52 209.9 117 91.5
Nitab4.5_0004528g0030 Nicotiana tabacum HOM05D004396 ORTHO05D005272 1.0e-52 209.9 117 91.5
TAR375G0183 Trochodendron aralioides HOM05D004396 ORTHO05D005272 1.0e-52 209.9 113 95.6
COL.COLO4_16940 Corchorus olitorius HOM05D004396 ORTHO05D005272 1.4e-52 209.5 117 94.0
DCAR_008222 Daucus carota HOM05D004396 ORTHO05D005272 1.8e-52 209.1 114 94.7
Cc08_g03470 Coffea canephora HOM05D004396 ORTHO05D005272 3.0e-52 208.4 117 92.3
Ciclev10002883m.g Citrus clementina HOM05D004396 ORTHO05D005272 4.0e-52 208.0 113 96.5
MSTRG.12178 Avicennia marina HOM05D004396 ORTHO05D005272 5.2e-52 207.6 114 93.9
PSO339G1317 Papaver somniferum HOM05D004396 ORTHO05D005272 6.7e-52 207.2 114 93.0
PSO384G3027 Papaver somniferum HOM05D004396 ORTHO05D005272 6.7e-52 207.2 114 93.0
PSO541G6011 Papaver somniferum HOM05D004396 ORTHO05D005272 6.7e-52 207.2 114 93.0
ECA240G0094 Erigeron canadensis HOM05D004396 ORTHO05D005272 8.8e-52 206.8 118 94.1
CiPaw.11G098400 Carya illinoinensis HOM05D004396 ORTHO05D005272 1.2e-51 206.5 113 93.8
PSO675G8737 Papaver somniferum HOM05D004396 ORTHO05D005272 1.2e-51 206.5 114 93.9
THA.LOC104798491 Tarenaya hassleriana HOM05D004396 ORTHO05D005272 1.2e-51 206.5 113 94.7
TWI81G0111 Tripterygium wilfordii HOM05D004396 ORTHO05D005272 1.2e-51 206.5 113 93.8
GSVIVG01013064001 Vitis vinifera HOM05D004396 ORTHO05D005272 1.2e-51 206.5 113 93.8
Duzib084G0048 Durio zibethinus HOM05D004396 ORTHO05D005272 1.5e-51 206.1 114 94.7
Oeu027093.1 Olea europaea HOM05D004396 ORTHO05D005272 1.5e-51 206.1 117 89.7
Haze_08163 Corylus avellana HOM05D004396 ORTHO05D005272 2.0e-51 205.7 113 93.8
Duzib205G0471 Durio zibethinus HOM05D004396 ORTHO05D005272 2.0e-51 205.7 113 94.7
Gorai.003G185400 Gossypium raimondii HOM05D004396 ORTHO05D005272 2.0e-51 205.7 114 93.9
HanXRQChr06g0172781 Helianthus annuus HOM05D004396 ORTHO05D005272 2.0e-51 205.7 113 94.7
Manes.12G090054 Manihot esculenta HOM05D004396 ORTHO05D005272 2.6e-51 205.3 113 94.7
PGSC0003DMG400018505 Solanum tuberosum HOM05D004396 ORTHO05D005272 2.6e-51 205.3 117 88.0
SGA_v2.0_scaffold198G41072 Striga asiatica HOM05D004396 ORTHO05D005272 2.6e-51 205.3 114 93.0
SGA_v2.0_scaffold36G14295 Striga asiatica HOM05D004396 ORTHO05D005272 2.6e-51 205.3 114 92.1
Eucgr.H00688 Eucalyptus grandis HOM05D004396 ORTHO05D005272 3.3e-51 204.9 113 93.8
Sc01g0005580 Simmondsia chinensis HOM05D004396 ORTHO05D005272 3.3e-51 204.9 113 93.8
Manes.04G055632 Manihot esculenta HOM05D004396 ORTHO05D005272 4.4e-51 204.5 113 94.7
Potri.003G096800 Populus trichocarpa HOM05D004396 ORTHO05D005272 4.4e-51 204.5 113 92.9
Gohir.A12G206100 Gossypium hirsutum HOM05D004396 ORTHO05D005272 5.7e-51 204.1 114 93.9
Gohir.D12G208400 Gossypium hirsutum HOM05D004396 ORTHO05D005272 5.7e-51 204.1 114 93.9
Gorai.008G224000 Gossypium raimondii HOM05D004396 ORTHO05D005272 5.7e-51 204.1 114 93.9
Aqoxy7G03666 Aquilegia oxysepala HOM05D004396 ORTHO05D005272 7.5e-51 203.8 114 91.2
Hund10776 Selenicereus undatus HOM05D004396 ORTHO05D005272 7.5e-51 203.8 113 93.8
THA.LOC104814414 Tarenaya hassleriana HOM05D004396 ORTHO05D005272 7.5e-51 203.8 113 93.8
ATR0626G058 Amborella trichopoda HOM05D004396 ORTHO05D005272 1.3e-50 203.0 114 93.0
AL4G31570 Arabidopsis lyrata HOM05D004396 ORTHO05D005272 1.3e-50 203.0 117 88.9
ECA240G0984 Erigeron canadensis HOM05D000006 ORTHO05D000001 1.3e-50 203.0 118 92.4
Thhalv10017441m.g Eutrema salsugineum HOM05D004396 ORTHO05D005272 1.3e-50 203.0 113 92.0
AT1G32210 Arabidopsis thaliana HOM05D004396 ORTHO05D005272 1.7e-50 202.6 117 91.5
CARHR129690 Cardamine hirsuta HOM05D004396 ORTHO05D005272 1.7e-50 202.6 117 90.6
PGR031G0362 Punica granatum HOM05D004396 ORTHO05D005272 1.7e-50 202.6 113 92.0
PGR031G2119 Punica granatum HOM05D004396 ORTHO05D005272 1.7e-50 202.6 113 92.0
unitig_899.g15442 Utricularia gibba HOM05D004396 ORTHO05D005272 2.2e-50 202.2 118 89.8
CDE08G0196 Ceratophyllum demersum HOM05D004396 ORTHO05D005272 2.8e-50 201.8 117 88.9
Lsat_1_v5_gn_3_19181 Lactuca sativa HOM05D004396 ORTHO05D005272 3.7e-50 201.4 114 92.1
Sabra03G0065300 Salix brachista HOM05D004396 ORTHO05D005272 3.7e-50 201.4 113 91.2
Sp1g27890 Schrenkiella parvula HOM05D004396 ORTHO05D005272 3.7e-50 201.4 117 91.5
TWI60G0023 Tripterygium wilfordii HOM05D004396 ORTHO05D005272 3.7e-50 201.4 113 91.2
AL1G46340 Arabidopsis lyrata HOM05D004396 ORTHO05D005272 4.8e-50 201.1 117 90.6
AT2G35520 Arabidopsis thaliana HOM05D004396 ORTHO05D005272 4.8e-50 201.1 117 90.6
Carub.0001s3054 Capsella rubella HOM05D004396 ORTHO05D005272 4.8e-50 201.1 117 91.5
CARHR031580 Cardamine hirsuta HOM05D004396 ORTHO05D005272 4.8e-50 201.1 117 90.6
ClCG10G001270 Citrullus lanatus HOM05D004396 ORTHO05D005272 4.8e-50 201.1 113 92.0
Thhalv10009144m.g Eutrema salsugineum HOM05D004396 ORTHO05D005272 4.8e-50 201.1 117 90.6
Potri.001G136800 Populus trichocarpa HOM05D004396 ORTHO05D005272 4.8e-50 201.1 113 92.0
Prupe.8G007900 Prunus persica HOM05D004396 ORTHO05D005272 4.8e-50 201.1 114 92.1
Phvul.002G136700 Phaseolus vulgaris HOM05D004396 ORTHO05D005272 6.3e-50 200.7 113 92.9
arahy.Tifrunner.gnm1.ann1.Z3U2VZ Arachis hypogaea HOM05D004396 ORTHO05D005272 1.1e-49 199.9 113 92.0
Prupe.4G286900 Prunus persica HOM05D004396 ORTHO05D005272 1.1e-49 199.9 114 93.0
BcaB07g32895 Brassica carinata HOM05D004396 ORTHO05D005272 1.4e-49 199.5 117 90.6
BraA09t38945Z Brassica rapa HOM05D004396 ORTHO05D005272 1.4e-49 199.5 117 90.6
BcaB03g13752 Brassica carinata HOM05D004396 ORTHO05D005272 1.8e-49 199.1 117 89.7
BcaB04g17995 Brassica carinata HOM05D004396 ORTHO05D005272 1.8e-49 199.1 117 89.7
BcaC05g27252 Brassica carinata HOM05D004396 ORTHO05D005272 2.4e-49 198.7 117 89.7
C05p31610 Brassica napus HOM05D004396 ORTHO05D005272 2.4e-49 198.7 117 89.7
Carub.0004s1721 Capsella rubella HOM05D004396 ORTHO05D005272 2.4e-49 198.7 117 88.0
A05p25120 Brassica napus HOM05D004396 ORTHO05D005272 4.1e-49 198.0 117 88.9
BraA05t21392Z Brassica rapa HOM05D004396 ORTHO05D005272 4.1e-49 198.0 117 88.9
Ca_25178_v3 Cicer arietinum L. HOM05D004396 ORTHO05D005272 4.1e-49 198.0 114 88.6
CsaV3_3G001340 Cucumis sativus L. HOM05D004396 ORTHO05D005272 4.1e-49 198.0 113 91.2
VMungo1215G3227 Vigna mungo HOM05D004396 ORTHO05D005272 4.1e-49 198.0 113 92.0
FAN20G1930 Fragaria x ananassa HOM05D004396 ORTHO05D005272 7.0e-49 197.2 114 89.5
FAN27G1914 Fragaria x ananassa HOM05D004396 ORTHO05D005272 7.0e-49 197.2 114 89.5
FAN24G1987 Fragaria x ananassa HOM05D004396 ORTHO05D005272 2.0e-48 195.7 114 88.6
Lalb_Chr05g0215751 Lupinus albus HOM05D004396 ORTHO05D005272 2.7e-48 195.3 113 89.4
MD05G1007700 Malus domestica HOM05D004396 ORTHO05D005272 3.5e-48 194.9 114 89.5
RcHm_v2.0_Chr6g0251281 Rosa chinensis HOM05D004396 ORTHO05D005272 3.5e-48 194.9 114 89.5
SalBow1G7612 Salvia bowleyana HOM05D004396 ORTHO05D005272 3.5e-48 194.9 117 86.3
Lj2g0004535 Lotus japonicus HOM05D004396 ORTHO05D005272 4.5e-48 194.5 113 88.5
Glyma.09G207800 Glycine max HOM05D004396 ORTHO05D005272 5.9e-48 194.1 110 90.9
MD10G1005100 Malus domestica HOM05D004396 ORTHO05D005272 5.9e-48 194.1 114 89.5
Migut.A01174 Erythranthe guttata HOM05D004396 ORTHO05D005272 7.7e-48 193.7 114 88.6
Cpa.g.sc42.149 Carica papaya HOM05D004396 ORTHO05D005272 1.0e-47 193.4 105 95.2
Lsat_1_v5_gn_6_80060 Lactuca sativa HOM05D004396 ORTHO05D005272 1.3e-47 193.0 110 92.7
FvH4_2g00930 Fragaria vesca HOM05D004396 ORTHO05D005272 1.7e-47 192.6 111 89.2
TPR.G19425 Trifolium pratense HOM05D004396 ORTHO05D005272 1.7e-47 192.6 114 87.7
Medtr3g023120 Medicago truncatula HOM05D004396 ORTHO05D005272 2.9e-47 191.8 117 87.2
Lalb_Chr16g0381071 Lupinus albus HOM05D004396 ORTHO05D005272 3.8e-47 191.4 113 85.0
Os04g0397000 Oryza sativa ssp. japonica HOM05D004396 ORTHO05D005272 3.8e-47 191.4 111 89.2
Ca_27048_v3 Cicer arietinum L. HOM05D004396 ORTHO05D005272 5.0e-47 191.0 117 84.6
SEGI_22391 Sequoiadendron giganteum HOM05D004396 ORTHO05D005272 5.0e-47 191.0 114 82.5
HPP92_025493 Vanilla planifolia HOM05D004396 ORTHO05D005272 8.5e-47 190.3 113 86.7
HPP92_025445 Vanilla planifolia HOM05D004396 ORTHO05D005272 3.2e-46 188.3 113 85.8
Sabra01G0105900 Salix brachista HOM05D004396 ORTHO05D005272 4.2e-46 188.0 123 82.9
Zm00001eb379050 Zea mays HOM05D004396 ORTHO05D005272 5.5e-46 187.6 111 87.4
Medtr5g029240 Medicago truncatula HOM05D004396 ORTHO05D005272 7.2e-46 187.2 110 87.3
Psat5g213400 Pisum sativum HOM05D004396 ORTHO05D005272 9.4e-46 186.8 113 85.8
TPR.G31993 Trifolium pratense HOM05D004396 ORTHO05D005272 2.1e-45 185.7 113 85.8
EL10Ac5g11811 Beta vulgaris HOM05D004396 ORTHO05D005272 2.7e-45 185.3 149 71.1
Glyma.14G201900 Glycine max HOM05D004396 ORTHO05D005272 3.6e-45 184.9 113 85.0
SMO117G0136 Selaginella moellendorffii HOM05D004396 ORTHO05D005272 3.0e-44 181.8 109 83.5
Lj4g0004552 Lotus japonicus HOM05D004396 ORTHO05D005272 8.8e-44 180.3 113 80.5
Mapoly0046s0003 Marchantia polymorpha HOM05D004396 ORTHO05D005272 8.8e-44 180.3 117 76.9
Pp3c2_30990 Physcomitrium patens HOM05D004396 ORTHO05D005272 1.3e-42 176.4 114 73.7
Gohir.A03G000033 Gossypium hirsutum HOM05D004396 ORTHO05D005272 4.8e-42 174.5 174 60.9
Gohir.D03G176200 Gossypium hirsutum HOM05D004396 ORTHO05D005272 1.0e-39 166.8 118 80.5
AagrBONN_evm.TU.Sc2ySwM_362.1218 Anthoceros agrestis HOM05D000444 ORTHO05D000489 3.8e-39 164.9 107 75.7
Peaxi162Scf00045g00321 Petunia axillaris HOM05D004396 ORTHO05D005272 1.1e-38 163.3 89 89.9
BolC3t13671H Brassica oleracea HOM05D004396 ORTHO05D005272 2.5e-38 162.2 201 52.2
Migut.E00744 Erythranthe guttata HOM05D004396 ORTHO05D005272 3.6e-37 158.3 88 90.9
AUR62036328 Chenopodium quinoa HOM05D004396 ORTHO05D005272 3.4e-35 151.8 85 91.8
Ciclev10013120m.g Citrus clementina HOM05D004396 ORTHO05D005272 2.8e-34 148.7 99 81.8
CiPaw.12G068300 Carya illinoinensis HOM05D004396 ORTHO05D005272 3.7e-34 148.3 86 87.2
arahy.Tifrunner.gnm1.ann1.KG0UNZ Arachis hypogaea HOM05D004396 ORTHO05D005272 6.3e-34 147.5 86 89.5
BolC5t31884H Brassica oleracea HOM05D004396 ORTHO05D005272 6.3e-34 147.5 89 88.8
Sed0012676 Sechium edule HOM05D004396 ORTHO05D005272 1.8e-33 146.0 85 88.2
Cfa012506 Carpinus fangiana HOM05D004396 ORTHO05D005272 7.0e-33 144.1 81 90.1
MBI02_g15155_MAGBIO Magnolia biondii HOM05D004396 ORTHO05D005272 3.5e-32 141.7 72 94.4
Nn1g00212 Nelumbo nucifera HOM05D004396 ORTHO05D005272 7.8e-32 140.6 82 89.0
CAN.G1987.1 Capsicum annuum HOM05D004396 ORTHO05D005272 1.7e-31 139.4 73 94.5
A08p09310 Brassica napus HOM05D004396 ORTHO05D005272 3.3e-30 135.2 105 70.5
BraA08t32929Z Brassica rapa HOM05D004396 ORTHO05D005272 3.3e-30 135.2 105 70.5
Psat2g139040 Pisum sativum HOM05D004396 ORTHO05D005272 4.7e-29 131.3 67 95.5
Aa31LG2G13800 Aethionema arabicum HOM05D004396 ORTHO05D005272 5.8e-27 124.4 84 82.1
CBR_g15971 Chara braunii HOM05D004396 ORTHO05D005272 9.8e-27 123.6 109 58.7
Sc24g0004110 Simmondsia chinensis HOM05D004396 ORTHO05D005272 9.8e-27 123.6 70 94.3
Ah.02g116090 Amaranthus hybridus HOM05D002241 ORTHO05D002458 4.9e-26 121.3 74 87.8
Cre02.g108400 Chlamydomonas reinhardtii HOM05D004396 ORTHO05D005272 7.0e-25 117.5 97 55.7
Atru.chr6.1524 Acer truncatum HOM05D004396 ORTHO05D005272 1.2e-24 116.7 83 75.9
FAN15G2154 Fragaria x ananassa HOM05D004396 ORTHO05D005272 1.7e-23 112.8 71 83.1
Pp3c1_6120 Physcomitrium patens HOM05D004396 ORTHO05D005272 4.0e-20 101.7 72 70.8
BolC8t47998H Brassica oleracea HOM05D004396 ORTHO05D005272 8.9e-20 100.5 104 60.6
Hund15006 Selenicereus undatus HOM05D004396 ORTHO05D005272 1.0e-15 87.0 47 91.5
C03p12000 Brassica napus HOM05D004396 ORTHO05D023989 3.4e-11 72.0 52 78.8
A09p33990 Brassica napus HOM05D004396 ORTHO05D005272 6.4e-10 67.8 47 80.9
C05p39130 Brassica napus HOM05D004396 ORTHO05D005272 3.2e-09 65.5 41 82.9
BolC5t32648H Brassica oleracea HOM05D004396 ORTHO05D005272 3.2e-09 65.5 41 82.9
RcHm_v2.0_Chr6g0251331 Rosa chinensis HOM05D004396 ORTHO05D005272 6.0e-08 61.2 59 62.7
RcHm_v2.0_Chr6g0251311 Rosa chinensis HOM05D004396 ORTHO05D005272 2.3e-07 59.3 42 78.6
TPR.G36203 Trifolium pratense HOM05D004396 ORTHO05D005272 2.3e-07 59.3 42 76.2


User provided reference genes

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