Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0033674 Camellia sinensis var. sinensis HOM05D050661 ORTHO05D112259 4.0e-47 191.0 93 100.0
CSS0015889 Camellia sinensis var. sinensis HOM05D050661 ORTHO05D111303 5.8e-30 134.0 93 69.9
CSS0045037 Camellia sinensis var. sinensis HOM05D006903 ORTHO05D008655 6.6e-10 67.4 47 72.3
Peaxi162Scf00367g00739 Petunia axillaris HOM05D006903 ORTHO05D008655 1.1e-09 66.6 47 72.3
Solyc05g009920.4 Solanum lycopersicum HOM05D006903 ORTHO05D008655 1.1e-09 66.6 47 72.3
Sopen05g005730 Solanum pennellii HOM05D006903 ORTHO05D008655 1.1e-09 66.6 47 72.3
Actinidia14845 Actinidia chinensis HOM05D006903 ORTHO05D008655 2.5e-09 65.5 47 70.2
CAN.G184.79 Capsicum annuum HOM05D006903 ORTHO05D008655 2.5e-09 65.5 47 70.2
Nitab4.5_0004705g0010 Nicotiana tabacum HOM05D006903 ORTHO05D008655 3.3e-09 65.1 47 68.1
TWI31G1007 Tripterygium wilfordii HOM05D006903 ORTHO05D008655 5.6e-09 64.3 47 68.1
Cc11_g10700 Coffea canephora HOM05D006903 ORTHO05D008655 7.3e-09 63.9 34 82.4
Nitab4.5_0005803g0010 Nicotiana tabacum HOM05D006903 ORTHO05D008655 7.3e-09 63.9 47 66.0
Migut.E00291 Erythranthe guttata HOM05D006903 ORTHO05D008655 1.6e-08 62.8 47 66.0
Dinv16514 Davidia involucrata HOM05D006903 ORTHO05D008655 2.1e-08 62.4 47 70.2
GSVIVG01011964001 Vitis vinifera HOM05D006903 ORTHO05D008655 3.6e-08 61.6 47 66.0
Lsat_1_v5_gn_3_58300 Lactuca sativa HOM05D006903 ORTHO05D008655 4.8e-08 61.2 47 61.7
Cfa018642 Carpinus fangiana HOM05D006903 ORTHO05D008655 6.2e-08 60.8 47 61.7
Haze_17427 Corylus avellana HOM05D006903 ORTHO05D008655 6.2e-08 60.8 47 61.7
Haze_17428 Corylus avellana HOM05D006903 ORTHO05D008655 6.2e-08 60.8 47 61.7
DCAR_030091 Daucus carota HOM05D006903 ORTHO05D008655 8.1e-08 60.5 47 68.1
Eucgr.G02357 Eucalyptus grandis HOM05D006903 ORTHO05D008655 8.1e-08 60.5 47 66.0
Lj3C1020T9 Lonicera japonica HOM05D006903 ORTHO05D008655 8.1e-08 60.5 47 61.7
QL01p001027 Quercus lobata HOM05D006903 ORTHO05D008655 8.1e-08 60.5 33 75.8
Rhsim09G0113100 Rhododendron simsii HOM05D006903 ORTHO05D008655 8.1e-08 60.5 47 63.8
Ciclev10033640m.g Citrus clementina HOM05D006903 ORTHO05D008655 1.1e-07 60.1 47 59.6
GSVIVG01021676001 Vitis vinifera HOM05D006903 ORTHO05D008655 1.8e-07 59.3 47 63.8
Sabra10G0099600 Salix brachista HOM05D006903 ORTHO05D008655 2.4e-07 58.9 47 61.7
SalBow8G1412 Salvia bowleyana HOM05D006903 ORTHO05D008655 2.4e-07 58.9 48 62.5
Nn3g17696 Nelumbo nucifera HOM05D006903 ORTHO05D008655 6.9e-07 57.4 47 63.8
Potri.010G130700 Populus trichocarpa HOM05D006903 ORTHO05D008655 6.9e-07 57.4 47 59.6
vmacro10523 Vaccinium macrocarpon HOM05D006903 ORTHO05D008655 6.9e-07 57.4 47 61.7
CANSAT64G1629 Cannabis sativa HOM05D006903 ORTHO05D008655 9.0e-07 57.0 47 61.7
CiPaw.16G002500 Carya illinoinensis HOM05D006903 ORTHO05D008655 9.0e-07 57.0 33 66.7
Ca_26576_v3 Cicer arietinum L. HOM05D006903 ORTHO05D008655 1.2e-06 56.6 47 61.7
FvH4_4g28200 Fragaria vesca HOM05D006903 ORTHO05D008655 1.2e-06 56.6 33 69.7
FAN12G3275 Fragaria x ananassa HOM05D006903 ORTHO05D008655 1.2e-06 56.6 33 69.7
FAN17G3035 Fragaria x ananassa HOM05D006903 ORTHO05D008655 1.2e-06 56.6 33 69.7
PGSC0003DMG400000822 Solanum tuberosum HOM05D006903 ORTHO05D008655 1.5e-06 56.2 44 65.9
TPR.G22411 Trifolium pratense HOM05D006903 ORTHO05D008655 1.5e-06 56.2 47 61.7
Lalb_Chr04g0254991 Lupinus albus HOM05D006903 ORTHO05D008655 2.0e-06 55.8 47 59.6
Phvul.003G026200 Phaseolus vulgaris HOM05D006903 ORTHO05D008655 2.0e-06 55.8 47 59.6
GSVIVG01031030001 Vitis vinifera HOM05D006903 ORTHO05D008655 2.0e-06 55.8 47 61.7
arahy.Tifrunner.gnm1.ann1.9PC4TR Arachis hypogaea HOM05D006903 ORTHO05D008655 2.6e-06 55.5 47 59.6
arahy.Tifrunner.gnm1.ann1.RDH5GK Arachis hypogaea HOM05D006903 ORTHO05D008655 2.6e-06 55.5 47 59.6
CsaV3_5G033920 Cucumis sativus L. HOM05D006903 ORTHO05D008655 2.6e-06 55.5 47 53.2
Glyma.02G101000 Glycine max HOM05D006903 ORTHO05D008655 2.6e-06 55.5 47 59.6
HanXRQChr00c0584g0576181 Helianthus annuus HOM05D006903 ORTHO05D008655 2.6e-06 55.5 47 57.4
HanXRQChr15g0476011 Helianthus annuus HOM05D006903 ORTHO05D008655 2.6e-06 55.5 47 57.4
MBI10_g08549_MAGBIO Magnolia biondii HOM05D006903 ORTHO05D008655 2.6e-06 55.5 47 59.6
Oeu044621.1 Olea europaea HOM05D006903 ORTHO05D008655 2.6e-06 55.5 47 59.6
FAN07G2589 Fragaria x ananassa HOM05D006903 ORTHO05D008655 3.4e-06 55.1 33 66.7
Aqoxy3G00382 Aquilegia oxysepala HOM05D006903 ORTHO05D008655 4.4e-06 54.7 46 60.9
A08p27120 Brassica napus HOM05D006903 ORTHO05D008655 4.4e-06 54.7 47 57.4
BraA08t34657Z Brassica rapa HOM05D006903 ORTHO05D008655 4.4e-06 54.7 47 57.4
Carub.0001s2488 Capsella rubella HOM05D006903 ORTHO05D008655 4.4e-06 54.7 47 57.4
MELO3C012210.2 Cucumis melo HOM05D006903 ORTHO05D008655 4.4e-06 54.7 47 53.2
Medtr5g053280 Medicago truncatula HOM05D006903 ORTHO05D008655 4.4e-06 54.7 47 59.6
PSO478G5279 Papaver somniferum HOM05D006903 ORTHO05D008655 4.4e-06 54.7 32 75.0
PGR119G0052 Punica granatum HOM05D006903 ORTHO05D008655 4.4e-06 54.7 47 57.4
TAR629G0855 Trochodendron aralioides HOM05D006903 ORTHO05D008655 4.4e-06 54.7 32 75.0
BcaB03g12083 Brassica carinata HOM05D006903 ORTHO05D008655 5.8e-06 54.3 47 55.3
ClCG05G023070 Citrullus lanatus HOM05D006903 ORTHO05D008655 5.8e-06 54.3 47 53.2
Sed0022387 Sechium edule HOM05D006903 ORTHO05D008655 5.8e-06 54.3 47 53.2
VMungo1215G2648 Vigna mungo HOM05D006903 ORTHO05D008655 5.8e-06 54.3 47 57.4
RcHm_v2.0_Chr4g0435961 Rosa chinensis HOM05D006903 ORTHO05D008655 7.6e-06 53.9 33 63.6
Prupe.1G304300 Prunus persica HOM05D006903 ORTHO05D008655 9.9e-06 53.5 47 53.2


User provided reference genes

Program Settings