Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0033668 Camellia sinensis var. sinensis HOM05D004998 ORTHO05D006104 5.9e-98 360.9 188 100.0
CSS0032367 Camellia sinensis var. sinensis HOM05D004998 ORTHO05D006104 8.6e-65 250.8 186 75.3
Actinidia34418 Actinidia chinensis HOM05D004998 ORTHO05D006104 3.0e-62 242.3 189 72.0
Rhsim13G0078800 Rhododendron simsii HOM05D004998 ORTHO05D006104 8.8e-62 240.7 189 72.0
Dinv17028 Davidia involucrata HOM05D004998 ORTHO05D006104 7.5e-61 237.7 186 71.0
Dinv42976 Davidia involucrata HOM05D004998 ORTHO05D006104 7.5e-61 237.7 186 71.0
Dinv43123 Davidia involucrata HOM05D004998 ORTHO05D006104 7.5e-61 237.7 186 71.0
vmacro03047 Vaccinium macrocarpon HOM05D004998 ORTHO05D006104 3.7e-60 235.3 190 71.1
Actinidia23927 Actinidia chinensis HOM05D004998 ORTHO05D006104 8.3e-60 234.2 186 69.9
Lj1A149T62 Lonicera japonica HOM05D004998 ORTHO05D006104 1.1e-59 233.8 186 69.9
Hma1.2p1_0615F.1_g189810 Hydrangea macrophylla HOM05D004998 ORTHO05D006104 1.0e-54 217.2 187 67.4
Ciclev10029345m.g Citrus clementina HOM05D004998 ORTHO05D006104 6.4e-52 208.0 187 64.7
Atru.chr3.3979 Acer truncatum HOM05D004998 ORTHO05D006104 1.0e-49 200.7 190 63.2
TAR633G0520 Trochodendron aralioides HOM05D004998 ORTHO05D006104 3.3e-48 195.7 188 62.8
Cc01_g13080 Coffea canephora HOM05D004998 ORTHO05D006104 7.3e-48 194.5 189 59.3
TAR636G1117 Trochodendron aralioides HOM05D004998 ORTHO05D006104 7.3e-48 194.5 191 61.3
GSVIVG01024930001 Vitis vinifera HOM05D004998 ORTHO05D006104 7.3e-48 194.5 188 61.7
Cfa011521 Carpinus fangiana HOM05D004998 ORTHO05D006104 2.8e-47 192.6 187 62.6
TWI75G0636 Tripterygium wilfordii HOM05D004998 ORTHO05D006104 1.1e-46 190.7 190 62.1
SGA_v2.0_scaffold41G15739 Striga asiatica HOM05D004998 ORTHO05D006104 3.1e-46 189.1 191 56.0
Migut.D02075 Erythranthe guttata HOM05D004998 ORTHO05D006104 1.5e-45 186.8 189 55.6
CiPaw.14G067400 Carya illinoinensis HOM05D004998 ORTHO05D006104 2.6e-45 186.0 189 61.9
Eucgr.B02327 Eucalyptus grandis HOM05D004998 ORTHO05D006104 9.8e-45 184.1 188 56.9
Sopen06g001560 Solanum pennellii HOM05D004998 ORTHO05D006104 1.3e-44 183.7 189 58.7
PGSC0003DMG400002149 Solanum tuberosum HOM05D004998 ORTHO05D006104 1.3e-44 183.7 191 59.2
Prupe.6G073200 Prunus persica HOM05D004998 ORTHO05D006104 1.7e-44 183.3 188 62.8
Solyc06g005600.3 Solanum lycopersicum HOM05D004998 ORTHO05D006104 2.2e-44 183.0 189 58.2
FvH4_3g36750 Fragaria vesca HOM05D004998 ORTHO05D006104 3.7e-44 182.2 190 61.1
FAN11G2014 Fragaria x ananassa HOM05D004998 ORTHO05D006104 8.3e-44 181.0 191 61.3
Potri.009G033400 Populus trichocarpa HOM05D004998 ORTHO05D006104 1.4e-43 180.3 190 60.0
QL01p031100 Quercus lobata HOM05D004998 ORTHO05D006104 1.4e-43 180.3 190 60.0
Sabra09G0023800 Salix brachista HOM05D004998 ORTHO05D006104 2.4e-43 179.5 184 61.4
TWI79G0863 Tripterygium wilfordii HOM05D004998 ORTHO05D006104 3.2e-43 179.1 189 58.2
CsaV3_6G016720 Cucumis sativus L. HOM05D004998 ORTHO05D006104 9.2e-43 177.6 186 57.0
Nn2g11147 Nelumbo nucifera HOM05D004998 ORTHO05D006104 2.7e-42 176.0 190 56.8
RcHm_v2.0_Chr5g0065711 Rosa chinensis HOM05D004998 ORTHO05D006104 2.7e-42 176.0 188 59.0
Phvul.L006843 Phaseolus vulgaris HOM05D004998 ORTHO05D006104 3.5e-42 175.6 189 55.6
ClCG02G020020 Citrullus lanatus HOM05D004998 ORTHO05D006104 1.3e-41 173.7 188 55.9
HanXRQChr07g0197281 Helianthus annuus HOM05D004998 ORTHO05D006104 1.7e-41 173.3 185 56.8
HanXRQChr12g0374241 Helianthus annuus HOM05D004998 ORTHO05D006104 1.7e-41 173.3 185 55.1
THA.LOC104810769 Tarenaya hassleriana HOM05D004998 ORTHO05D006104 2.3e-41 172.9 186 57.5
Lalb_Chr03g0026531 Lupinus albus HOM05D004998 ORTHO05D006104 5.0e-41 171.8 188 58.0
VMungo1080G1028 Vigna mungo HOM05D004998 ORTHO05D006104 5.0e-41 171.8 189 55.0
Glyma.15G036800 Glycine max HOM05D004998 ORTHO05D006104 6.6e-41 171.4 188 55.3
MD11G1097800 Malus domestica HOM05D004998 ORTHO05D006104 6.6e-41 171.4 187 58.3
DCAR_005961 Daucus carota HOM05D004998 ORTHO05D006104 1.5e-40 170.2 188 54.8
Lsat_1_v5_gn_9_23841 Lactuca sativa HOM05D004998 ORTHO05D006104 1.5e-40 170.2 188 58.0
MBI14_g12121_MAGBIO Magnolia biondii HOM05D004998 ORTHO05D006104 1.5e-40 170.2 192 54.7
SalBow3G1756 Salvia bowleyana HOM05D004998 ORTHO05D006104 1.5e-40 170.2 189 55.0
MELO3C025903.2 Cucumis melo HOM05D004998 ORTHO05D006104 7.3e-40 167.9 187 56.7
ECA247G2861 Erigeron canadensis HOM05D004998 ORTHO05D006104 7.3e-40 167.9 193 55.4
FAN21G1380 Fragaria x ananassa HOM05D004998 ORTHO05D006104 7.3e-40 167.9 196 58.2
PGR102G0830 Punica granatum HOM05D004998 ORTHO05D006104 7.3e-40 167.9 189 56.1
Peaxi162Scf00092g01117 Petunia axillaris HOM05D004998 ORTHO05D006104 1.6e-39 166.8 193 54.4
Thecc.09G318900 Theobroma cacao HOM05D004998 ORTHO05D006104 1.6e-39 166.8 185 57.3
Lj3g0014072 Lotus japonicus HOM05D004998 ORTHO05D006104 2.1e-39 166.4 188 55.3
MD03G1088800 Malus domestica HOM05D004998 ORTHO05D006104 3.6e-39 165.6 189 58.2
EL10Ac7g16043 Beta vulgaris HOM05D004998 ORTHO05D006104 4.7e-39 165.2 190 55.8
Hund18896 Selenicereus undatus HOM05D004998 ORTHO05D006104 8.1e-39 164.5 190 55.3
Duzib150G0269 Durio zibethinus HOM05D004998 ORTHO05D006104 1.4e-38 163.7 185 55.7
Manes.01G171600 Manihot esculenta HOM05D004998 ORTHO05D006104 4.0e-38 162.2 188 54.3
FAN16G3214 Fragaria x ananassa HOM05D004998 ORTHO05D006104 5.2e-38 161.8 209 55.5
Gohir.A05G094300 Gossypium hirsutum HOM05D004998 ORTHO05D006104 6.8e-38 161.4 182 57.1
Nitab4.5_0000272g0050 Nicotiana tabacum HOM05D004998 ORTHO05D006104 1.2e-37 160.6 202 53.0
Medtr2g097480 Medicago truncatula HOM05D004998 ORTHO05D006104 2.0e-37 159.8 189 55.6
AUR62009547 Chenopodium quinoa HOM05D004998 ORTHO05D006104 5.8e-37 158.3 190 52.6
AUR62001761 Chenopodium quinoa HOM05D004998 ORTHO05D006104 7.5e-37 157.9 190 52.6
Nn2g13381 Nelumbo nucifera HOM05D004998 ORTHO05D006104 9.9e-37 157.5 189 55.0
Duzib168G2185 Durio zibethinus HOM05D004998 ORTHO05D006104 2.2e-36 156.4 185 54.1
Psat5g285160 Pisum sativum HOM05D004998 ORTHO05D006104 2.2e-36 156.4 185 53.5
CiPaw.13G091800 Carya illinoinensis HOM05D004998 ORTHO05D006104 3.7e-36 155.6 183 56.8
Glyma.13G337700 Glycine max HOM05D004998 ORTHO05D006104 3.7e-36 155.6 190 53.2
arahy.Tifrunner.gnm1.ann1.AD2TJP Arachis hypogaea HOM05D004998 ORTHO05D006104 6.4e-36 154.8 188 54.3
arahy.Tifrunner.gnm1.ann1.JSTV8M Arachis hypogaea HOM05D004998 ORTHO05D006104 6.4e-36 154.8 188 54.3
Oeu053883.1 Olea europaea HOM05D004998 ORTHO05D006104 2.4e-35 152.9 169 56.2
MSTRG.18567 Avicennia marina HOM05D004998 ORTHO05D006104 3.2e-35 152.5 191 53.4
Peaxi162Scf00122g01415 Petunia axillaris HOM05D004998 ORTHO05D006104 2.7e-34 149.4 191 51.3
COL.COLO4_18543 Corchorus olitorius HOM05D004998 ORTHO05D006104 4.6e-34 148.7 186 51.1
ATR0559G067 Amborella trichopoda HOM05D004998 ORTHO05D006104 2.3e-33 146.4 186 49.5
CARHR285830 Cardamine hirsuta HOM05D004998 ORTHO05D006104 6.6e-33 144.8 187 50.3
Aqoxy1G00915 Aquilegia oxysepala HOM05D004998 ORTHO05D006104 1.1e-32 144.1 189 51.3
TPR.G5593 Trifolium pratense HOM05D004998 ORTHO05D006104 1.5e-32 143.7 190 52.1
CANSAT54G1321 Cannabis sativa HOM05D004998 ORTHO05D006104 7.3e-32 141.4 183 52.5
Dinv06259 Davidia involucrata HOM05D004998 ORTHO05D006104 1.2e-31 140.6 103 72.8
AL8G35930 Arabidopsis lyrata HOM05D004998 ORTHO05D006104 2.8e-31 139.4 188 48.4
Gohir.D05G094800 Gossypium hirsutum HOM05D004998 ORTHO05D006104 4.7e-31 138.7 181 50.8
Ah.08g219770 Amaranthus hybridus HOM05D004998 ORTHO05D006104 2.4e-30 136.3 197 49.7
Gorai.009G098000 Gossypium raimondii HOM05D004998 ORTHO05D006104 6.8e-30 134.8 181 50.3
Sed0008555 Sechium edule HOM05D004998 ORTHO05D006104 1.5e-29 133.7 187 51.3
Gohir.D03G123600 Gossypium hirsutum HOM05D004998 ORTHO05D006104 2.6e-29 132.9 173 52.6
Sp6g21150 Schrenkiella parvula HOM05D004998 ORTHO05D006104 3.4e-29 132.5 188 47.9
Carub.0008s2013 Capsella rubella HOM05D004998 ORTHO05D006104 4.4e-29 132.1 188 48.9
Gohir.A03G043800 Gossypium hirsutum HOM05D004998 ORTHO05D006104 7.6e-29 131.3 173 52.6
Aa31LG4G15620 Aethionema arabicum HOM05D004998 ORTHO05D006104 2.2e-28 129.8 184 48.9
Gorai.003G130300 Gossypium raimondii HOM05D004998 ORTHO05D006104 6.4e-28 128.3 173 51.4
Os01g0144600 Oryza sativa ssp. japonica HOM05D004998 ORTHO05D006104 6.4e-28 128.3 199 43.7
Haze_24126 Corylus avellana HOM05D004998 ORTHO05D006104 8.4e-28 127.9 99 70.7
Thhalv10014846m.g Eutrema salsugineum HOM05D004998 ORTHO05D006104 8.4e-28 127.9 188 46.3
PSO339G2709 Papaver somniferum HOM05D004998 ORTHO05D006104 1.4e-27 127.1 199 46.2
AT5G59460 Arabidopsis thaliana HOM05D004998 ORTHO05D006104 1.9e-27 126.7 188 46.8
C03p13690 Brassica napus HOM05D004998 ORTHO05D006104 3.2e-27 125.9 188 44.1
CDE02G2808 Ceratophyllum demersum HOM05D004998 ORTHO05D006104 4.1e-27 125.6 182 45.6
Thhalv10002686m.g Eutrema salsugineum HOM05D004998 ORTHO05D006104 2.1e-26 123.2 186 46.2
BcaB08g36256 Brassica carinata HOM05D004998 ORTHO05D006104 2.8e-23 112.8 183 43.7
A02p07120 Brassica napus HOM05D004998 ORTHO05D006104 3.6e-23 112.5 188 44.7
Nitab4.5_0006945g0010 Nicotiana tabacum HOM05D004998 ORTHO05D006104 3.6e-23 112.5 189 44.4
BcaC03g14012 Brassica carinata HOM05D004998 ORTHO05D006104 4.7e-23 112.1 186 45.7
C02p12480 Brassica napus HOM05D004998 ORTHO05D006104 4.7e-23 112.1 186 45.7
BolC2t07348H Brassica oleracea HOM05D004998 ORTHO05D006104 4.7e-23 112.1 186 45.7
BcaB05g22508 Brassica carinata HOM05D004998 ORTHO05D006104 6.2e-23 111.7 189 43.9
Sc12g0001370 Simmondsia chinensis HOM05D004998 ORTHO05D006104 1.1e-22 110.9 137 53.3
Aa31LG1G11810 Aethionema arabicum HOM05D000959 ORTHO05D000775 1.4e-22 110.5 177 43.5
Nitab4.5_0007132g0030 Nicotiana tabacum HOM05D004998 ORTHO05D006104 1.4e-22 110.5 176 45.5
BraA02t05793Z Brassica rapa HOM05D004998 ORTHO05D006104 2.4e-22 109.8 186 43.5
CDE08G1537 Ceratophyllum demersum HOM05D004998 ORTHO05D006104 2.0e-21 106.7 152 46.1
HPP92_006623 Vanilla planifolia HOM05D004998 ORTHO05D006104 2.2e-20 103.2 228 39.0
Cpa.g.sc81.121 Carica papaya HOM05D004998 ORTHO05D006104 5.4e-19 98.6 75 65.3
BraA10t43749Z Brassica rapa HOM05D004998 ORTHO05D006104 1.6e-18 97.1 181 42.0
FvH4_3g41460 Fragaria vesca HOM05D004998 ORTHO05D006104 3.5e-18 95.9 179 40.8
FAN11G1834 Fragaria x ananassa HOM05D004998 ORTHO05D006104 6.0e-18 95.1 179 40.8
BolC3t13819H Brassica oleracea HOM05D004998 ORTHO05D006104 2.3e-17 93.2 154 45.5
A10p16680 Brassica napus HOM05D004998 ORTHO05D006104 3.9e-17 92.4 181 40.9
CSS0021101 Camellia sinensis var. sinensis HOM05D004998 ORTHO05D006104 5.1e-17 92.0 72 73.6
Zm00001eb124480 Zea mays HOM05D004998 ORTHO05D006104 8.7e-17 91.3 82 63.4
FAN21G1361 Fragaria x ananassa HOM05D004998 ORTHO05D006104 1.6e-15 87.0 183 40.4
C09p51870 Brassica napus HOM05D004998 ORTHO05D006104 6.2e-15 85.1 154 41.6
Lalb_Chr01g0003571 Lupinus albus HOM05D004998 ORTHO05D006104 1.4e-14 84.0 136 44.9
FAN25G2664 Fragaria x ananassa HOM05D004998 ORTHO05D006104 5.3e-14 82.0 183 39.3
C03p13710 Brassica napus HOM05D004998 ORTHO05D006104 3.4e-13 79.3 142 40.1
BolC9t58049H Brassica oleracea HOM05D004998 ORTHO05D006104 9.9e-13 77.8 139 43.2
BcaB01g04577 Brassica carinata HOM05D004998 ORTHO05D006104 8.4e-12 74.7 151 37.1
BcaC04g19766 Brassica carinata HOM05D004998 ORTHO05D006104 2.4e-11 73.2 174 37.4
SEGI_30466 Sequoiadendron giganteum HOM05D004998 ORTHO05D006104 4.2e-11 72.4 141 38.3
BcaC01g06521 Brassica carinata HOM05D004998 ORTHO05D006104 3.5e-10 69.3 181 33.7
BcaB08g36255 Brassica carinata HOM05D004998 ORTHO05D006104 6.0e-10 68.6 170 36.5
Oeu002429.1 Olea europaea HOM05D004998 ORTHO05D006104 3.0e-09 66.2 59 66.1
Pp3c16_15780 Physcomitrium patens HOM05D004998 ORTHO05D006104 4.3e-08 62.4 192 29.2
FAN25G0408 Fragaria x ananassa HOM05D004998 ORTHO05D006104 2.1e-07 60.1 68 60.3
Mapoly0094s0023 Marchantia polymorpha HOM05D004998 ORTHO05D006104 2.1e-07 60.1 95 44.2
unitig_37.g12674 Utricularia gibba HOM05D004998 ORTHO05D006104 2.1e-07 60.1 139 39.6
arahy.Tifrunner.gnm1.ann1.MN3VL9 Arachis hypogaea HOM05D004998 ORTHO05D006104 1.4e-06 57.4 81 44.4


User provided reference genes

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