Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0033662 Camellia sinensis var. sinensis HOM05D005971 ORTHO05D007459 0.0e+00 2075.4 1024 100.0
CSS0049989 Camellia sinensis var. sinensis HOM05D005971 ORTHO05D007459 0.0e+00 2037.3 1024 98.5
Dinv19623 Davidia involucrata HOM05D005971 ORTHO05D007459 0.0e+00 1457.2 984 72.7
Actinidia35435 Actinidia chinensis HOM05D005971 ORTHO05D007459 0.0e+00 1398.6 992 70.8
Lj1C905G3 Lonicera japonica HOM05D005971 ORTHO05D007459 0.0e+00 1189.5 981 61.4
Cfa019419 Carpinus fangiana HOM05D005971 ORTHO05D007459 0.0e+00 1176.0 985 61.4
TAR626G0017 Trochodendron aralioides HOM05D005971 ORTHO05D007459 0.0e+00 1172.1 1000 59.3
QL04p073974 Quercus lobata HOM05D005971 ORTHO05D007459 0.0e+00 1162.9 996 59.9
vmacro09786 Vaccinium macrocarpon HOM05D005971 ORTHO05D007459 0.0e+00 1139.8 978 60.7
Atru.chr12.2184 Acer truncatum HOM05D005971 ORTHO05D007459 0.0e+00 1130.5 986 57.3
Potri.001G457550 Populus trichocarpa HOM05D005971 ORTHO05D007459 0.0e+00 1127.5 976 58.2
Rhsim04G0005800 Rhododendron simsii HOM05D005971 ORTHO05D007459 0.0e+00 1123.6 1106 55.2
Sabra16G0310100 Salix brachista HOM05D005971 ORTHO05D007459 0.0e+00 1111.7 984 57.4
Ciclev10018677m.g Citrus clementina HOM05D005971 ORTHO05D007459 0.0e+00 1097.4 979 57.4
Migut.M01561 Erythranthe guttata HOM05D005971 ORTHO05D007459 0.0e+00 1086.2 981 55.8
Sopen10g001570 Solanum pennellii HOM05D005971 ORTHO05D007459 0.0e+00 1085.9 982 55.9
FAN11G3334 Fragaria x ananassa HOM05D005971 ORTHO05D007459 0.0e+00 1085.5 987 56.3
Cc05_g16010 Coffea canephora HOM05D005971 ORTHO05D007459 0.0e+00 1083.9 981 55.5
FvH4_3g15860 Fragaria vesca HOM05D005971 ORTHO05D007459 0.0e+00 1082.0 987 56.0
MD05G1219300 Malus domestica HOM05D005971 ORTHO05D007459 0.0e+00 1082.0 983 57.3
FAN16G0465 Fragaria x ananassa HOM05D005971 ORTHO05D007459 0.0e+00 1077.4 987 56.3
RcHm_v2.0_Chr5g0026671 Rosa chinensis HOM05D005971 ORTHO05D007459 0.0e+00 1076.2 984 55.9
Nitab4.5_0000611g0060 Nicotiana tabacum HOM05D005971 ORTHO05D007459 3.4e-309 1065.1 972 56.3
CAN.G492.69 Capsicum annuum HOM05D005971 ORTHO05D007459 1.3e-308 1063.1 981 54.8
Oeu052011.1 Olea europaea HOM05D005971 ORTHO05D007459 1.1e-307 1060.1 964 56.4
Duzib268G0338 Durio zibethinus HOM05D005971 ORTHO05D007459 7.9e-298 1027.3 970 54.4
Peaxi162Scf00267g01016 Petunia axillaris HOM05D005971 ORTHO05D007459 7.9e-298 1027.3 976 53.5
CANSAT80G2256 Cannabis sativa HOM05D005971 ORTHO05D007459 1.7e-295 1019.6 978 53.9
TWI39G0032 Tripterygium wilfordii HOM05D005971 ORTHO05D007459 1.5e-293 1013.1 980 54.1
Nitab4.5_0004488g0030 Nicotiana tabacum HOM05D005971 ORTHO05D007459 6.1e-290 1001.1 1001 52.6
Gorai.013G178300 Gossypium raimondii HOM05D005971 ORTHO05D007459 1.8e-289 999.6 975 52.4
DCAR_009638 Daucus carota HOM05D005971 ORTHO05D007459 3.3e-288 995.3 939 53.7
Solyc10g005600.4 Solanum lycopersicum HOM05D005971 ORTHO05D007459 1.3e-287 993.4 975 52.9
SGA_v2.0_scaffold7G03577 Striga asiatica HOM05D005971 ORTHO05D007459 1.7e-287 993.0 967 53.4
Manes.14G015836 Manihot esculenta HOM05D005971 ORTHO05D007459 2.0e-285 986.1 841 57.1
ECA240G1928 Erigeron canadensis HOM05D005971 ORTHO05D007459 1.0e-281 973.8 961 51.6
Glyma.15G255000 Glycine max HOM05D005971 ORTHO05D007459 1.0e-281 973.8 979 51.5
Aqoxy2G04113 Aquilegia oxysepala HOM05D005971 ORTHO05D007459 2.2e-279 966.1 995 51.5
ClCG11G016380 Citrullus lanatus HOM05D005971 ORTHO05D007459 5.3e-278 961.4 977 51.0
Lalb_Chr25g0285011 Lupinus albus HOM05D005971 ORTHO05D007459 7.0e-278 961.1 978 50.8
Prupe.4G140600 Prunus persica HOM05D005971 ORTHO05D007459 4.5e-277 958.4 866 57.4
PGR031G0315 Punica granatum HOM05D005971 ORTHO05D007459 1.7e-276 956.4 982 49.6
SalBow8G3201 Salvia bowleyana HOM05D005971 ORTHO05D007459 2.9e-276 955.7 999 50.5
GSVIVG01020430001 Vitis vinifera HOM05D005971 ORTHO05D007459 2.9e-276 955.7 930 52.8
Phvul.005G056400 Phaseolus vulgaris HOM05D005971 ORTHO05D007459 6.5e-276 954.5 979 50.1
Ca_03684_v3 Cicer arietinum L. HOM05D005971 ORTHO05D007459 2.5e-275 952.6 979 50.3
Lsat_1_v5_gn_7_71401 Lactuca sativa HOM05D005971 ORTHO05D007459 5.5e-275 951.4 983 52.2
Lj3g0007743 Lotus japonicus HOM05D005971 ORTHO05D007459 3.6e-274 948.7 977 50.1
TPR.G9756 Trifolium pratense HOM05D005971 ORTHO05D007459 3.0e-273 945.7 992 49.8
arahy.Tifrunner.gnm1.ann1.MUD8D6 Arachis hypogaea HOM05D005971 ORTHO05D007459 1.3e-271 940.3 978 50.4
Medtr2g069560 Medicago truncatula HOM05D005971 ORTHO05D007459 2.8e-271 939.1 982 49.8
EL10Ac2g03354 Beta vulgaris HOM05D005971 ORTHO05D007459 1.8e-270 936.4 967 49.7
CsaV3_4G031820 Cucumis sativus L. HOM05D005971 ORTHO05D007459 3.8e-268 928.7 978 49.7
HanXRQChr05g0160991 Helianthus annuus HOM05D005971 ORTHO05D007459 1.5e-267 926.8 974 50.4
PSO675G3107 Papaver somniferum HOM05D005971 ORTHO05D007459 3.3e-267 925.6 991 49.1
Psat1g011400 Pisum sativum HOM05D005971 ORTHO05D007459 6.1e-266 921.4 992 49.3
PSO017G5934 Papaver somniferum HOM05D005971 ORTHO05D007459 1.0e-265 920.6 995 48.4
THA.LOC104822751 Tarenaya hassleriana HOM05D005971 ORTHO05D007459 3.0e-265 919.1 981 49.2
AL1G14000 Arabidopsis lyrata HOM05D005971 ORTHO05D007459 1.0e-260 904.0 981 47.0
Aa31LG1G20480 Aethionema arabicum HOM05D005971 ORTHO05D007459 2.3e-257 892.9 982 46.8
AT1G04390 Arabidopsis thaliana HOM05D005971 ORTHO05D007459 2.3e-257 892.9 984 46.7
Carub.0001s0356 Capsella rubella HOM05D005971 ORTHO05D007459 6.8e-257 891.3 981 46.5
GSVIVG01020427001 Vitis vinifera HOM05D005971 ORTHO05D007459 4.4e-256 888.6 916 51.1
Atru.chr12.2179 Acer truncatum HOM05D005971 ORTHO05D007459 6.4e-255 884.8 751 58.1
Ah.06g185720 Amaranthus hybridus HOM05D005971 ORTHO05D007459 1.7e-252 876.7 988 46.4
Sed0013026 Sechium edule HOM05D005971 ORTHO05D007459 3.9e-252 875.5 922 49.9
A10p02830 Brassica napus HOM05D005971 ORTHO05D007459 9.8e-248 860.9 981 46.2
BolC5t29039H Brassica oleracea HOM05D005971 ORTHO05D007459 1.3e-247 860.5 982 45.6
C05p02580 Brassica napus HOM05D005971 ORTHO05D007459 1.9e-246 856.7 981 45.6
Hma1.2p1_0637F.1_g193590 Hydrangea macrophylla HOM05D005971 ORTHO05D007459 1.6e-237 827.0 998 47.9
Thecc.07G154200 Theobroma cacao HOM05D005971 ORTHO05D007459 1.9e-227 793.5 775 53.3
FAN21G1476 Fragaria x ananassa HOM05D005971 ORTHO05D007459 2.5e-227 793.1 974 45.6
Nn7g37820 Nelumbo nucifera HOM05D005971 ORTHO05D007459 4.9e-223 778.9 797 52.3
BraA10t42550Z Brassica rapa HOM05D005971 ORTHO05D007459 1.7e-220 770.4 957 42.7
MBI02_g40085_MAGBIO Magnolia biondii HOM05D005971 ORTHO05D007459 5.3e-217 758.8 858 47.1
Hund12466 Selenicereus undatus HOM05D005971 ORTHO05D007459 3.2e-214 749.6 841 46.7
AUR62038398 Chenopodium quinoa HOM05D005971 ORTHO05D007459 1.6e-213 747.3 982 42.7
Thhalv10006788m.g Eutrema salsugineum HOM05D005971 ORTHO05D007459 9.6e-211 738.0 957 42.0
Sc06g0001560 Simmondsia chinensis HOM05D005971 ORTHO05D007459 8.1e-210 734.9 746 49.6
Eucgr.F03182 Eucalyptus grandis HOM05D005971 ORTHO05D007459 9.0e-201 704.9 749 48.7
MELO3C010564.2 Cucumis melo HOM05D005971 ORTHO05D007459 1.5e-200 704.1 956 42.2
VMungo1080G0173 Vigna mungo HOM05D005971 ORTHO05D007459 4.1e-193 679.5 800 45.8
PGSC0003DMG402011239 Solanum tuberosum HOM05D005971 ORTHO05D007459 2.0e-184 650.6 549 58.5
Sp1g03210 Schrenkiella parvula HOM05D005971 ORTHO05D007459 1.2e-181 641.3 717 45.0
CARHR003720 Cardamine hirsuta HOM05D005971 ORTHO05D007459 1.6e-181 641.0 730 45.1
Gohir.D13G157500 Gossypium hirsutum HOM05D005971 ORTHO05D007459 1.1e-174 618.2 549 55.4
Cpa.g.sc10.37 Carica papaya HOM05D005971 ORTHO05D007459 4.2e-174 616.3 766 45.6
ATR0165G004 Amborella trichopoda HOM05D005971 ORTHO05D007459 9.4e-174 615.1 989 37.3
CDE12G0091 Ceratophyllum demersum HOM05D005971 ORTHO05D007459 4.6e-144 516.5 747 40.8
Gohir.A13G153066 Gossypium hirsutum HOM05D005971 ORTHO05D007459 3.4e-139 500.4 422 56.9
Zm00001eb273960 Zea mays HOM05D005971 ORTHO05D007459 2.9e-130 470.7 854 34.7
PGSC0003DMG401011239 Solanum tuberosum HOM05D005971 ORTHO05D007459 1.9e-129 468.0 409 56.7
unitig_26.g10082 Utricularia gibba HOM05D005971 ORTHO05D007459 3.9e-103 380.6 907 30.8
FAN25G3291 Fragaria x ananassa HOM05D005971 ORTHO05D007459 1.1e-100 372.5 375 52.8
Gohir.A13G153099 Gossypium hirsutum HOM05D005971 ORTHO05D007459 4.3e-94 350.5 431 47.3
Pp3c6_21780 Physcomitrium patens HOM05D005971 ORTHO05D007459 7.1e-89 333.2 1035 26.6
Peaxi162Scf00095g00013 Petunia axillaris HOM05D005971 ORTHO05D007459 2.8e-77 294.7 255 60.0
HPP92_026349 Vanilla planifolia HOM05D005971 ORTHO05D007459 2.9e-74 284.6 473 37.4
Cpa.g.sc10.38 Carica papaya HOM05D005971 ORTHO05D007459 4.2e-73 280.8 197 61.9
Mapoly0060s0028 Marchantia polymorpha HOM05D005971 ORTHO05D007459 1.0e-71 276.2 566 29.5
Nn7g37821 Nelumbo nucifera HOM05D005971 ORTHO05D007459 1.7e-69 268.9 193 64.2
HPP92_026348 Vanilla planifolia HOM05D005971 ORTHO05D007459 1.9e-65 255.4 310 38.4
Peaxi162Scf01123g00003 Petunia axillaris HOM05D005971 ORTHO05D007459 5.5e-65 253.8 438 36.1
Os06g0674800 Oryza sativa ssp. japonica HOM05D005971 ORTHO05D007459 1.4e-60 239.2 406 35.7
Peaxi162Scf01123g00008 Petunia axillaris HOM05D005971 ORTHO05D007459 4.0e-55 221.1 235 49.4
Haze_08564 Corylus avellana HOM05D005971 ORTHO05D000006 3.7e-53 214.5 145 71.7
Atru.chr12.2180 Acer truncatum HOM05D005971 ORTHO05D007459 2.7e-51 208.4 210 53.3
CARHR003730 Cardamine hirsuta HOM05D005971 ORTHO05D007459 4.7e-48 197.6 213 47.9
Gohir.D13G157600 Gossypium hirsutum HOM05D005971 ORTHO05D007459 8.0e-48 196.8 193 53.4
GSVIVG01020426001 Vitis vinifera HOM05D005971 ORTHO05D007459 3.4e-46 191.4 176 53.4
arahy.Tifrunner.gnm1.ann1.Q40ZT9 Arachis hypogaea HOM05D005971 ORTHO05D007459 8.3e-45 186.8 158 57.0
GSVIVG01020425001 Vitis vinifera HOM05D005971 ORTHO05D007459 9.1e-44 183.3 144 60.4
VMungo1080G1570 Vigna mungo HOM05D005971 ORTHO05D007459 1.3e-42 179.5 140 58.6
Glyma.13G358366 Glycine max HOM05D005971 ORTHO05D007459 9.5e-33 146.7 148 52.0
Glyma.13G098800 Glycine max HOM05D005971 ORTHO05D007459 3.6e-32 144.8 148 51.4
Zm00001eb395680 Zea mays HOM05D005971 ORTHO05D007459 3.6e-32 144.8 269 33.5
COL.COLO4_20820 Corchorus olitorius HOM05D005971 ORTHO05D007459 3.0e-31 141.7 112 58.9
C03p00610 Brassica napus HOM05D005971 ORTHO05D040551 7.8e-27 127.1 155 42.6
Glyma.08G171633 Glycine max HOM05D005971 ORTHO05D007459 1.2e-22 113.2 77 64.9
Glyma.13G358300 Glycine max HOM05D005971 ORTHO05D007459 1.2e-22 113.2 172 41.3
CDE12G0613 Ceratophyllum demersum HOM05D005971 ORTHO05D007459 6.0e-19 100.9 103 45.6
BolC3t12626H Brassica oleracea HOM05D005971 ORTHO05D040551 9.5e-17 93.6 155 35.5
Glyma.13G052600 Glycine max HOM05D005971 ORTHO05D007459 3.2e-12 78.6 124 40.3
Sc06g0001570 Simmondsia chinensis HOM05D005971 ORTHO05D007459 7.1e-12 77.4 64 60.9
CAN.G1199.4 Capsicum annuum HOM05D002053 ORTHO05D007459 1.1e-09 70.1 47 66.0
BcaB06g28382 Brassica carinata HOM05D006313 ORTHO05D007853 1.4e-07 63.2 125 32.8
Carub.0004s1176 Capsella rubella HOM05D006313 ORTHO05D007853 6.8e-07 60.8 125 31.2


User provided reference genes

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