Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0033656 Camellia sinensis var. sinensis HOM05D000649 ORTHO05D014141 9.3e-80 300.1 142 100.0
CSS0031502 Camellia sinensis var. sinensis HOM05D000649 ORTHO05D014141 4.9e-73 277.7 168 82.1
CSS0028931 Camellia sinensis var. sinensis HOM05D000649 ORTHO05D014141 1.1e-72 276.6 168 82.1
CSS0000454 Camellia sinensis var. sinensis HOM05D000649 ORTHO05D014141 4.2e-72 274.6 168 81.0
CSS0050453 Camellia sinensis var. sinensis HOM05D000649 ORTHO05D014141 9.3e-72 273.5 168 81.0
CSS0050092 Camellia sinensis var. sinensis HOM05D000649 ORTHO05D014141 5.1e-70 267.7 167 79.0
CSS0004487 Camellia sinensis var. sinensis HOM05D000649 ORTHO05D014141 3.7e-68 261.5 149 85.9
CSS0024873 Camellia sinensis var. sinensis HOM05D000649 ORTHO05D014141 4.9e-65 251.1 141 85.8
CSS0044724 Camellia sinensis var. sinensis HOM05D000649 ORTHO05D014141 6.0e-63 244.2 147 82.3
CSS0016678 Camellia sinensis var. sinensis HOM05D000649 ORTHO05D014141 4.8e-52 208.0 164 65.9
Rhsim10G0191400 Rhododendron simsii HOM05D000649 ORTHO05D000513 5.7e-29 131.3 79 74.7
vmacro20607 Vaccinium macrocarpon HOM05D000649 ORTHO05D000513 1.6e-26 123.2 83 66.3
TAR628G0170 Trochodendron aralioides HOM05D000649 ORTHO05D000513 7.2e-24 114.4 98 55.1
Cpa.g.sc26.10 Carica papaya HOM05D000649 ORTHO05D000513 4.7e-23 111.7 91 51.6
TAR381G0051 Trochodendron aralioides HOM05D000649 ORTHO05D000513 4.7e-23 111.7 100 51.0
Nn5g31051 Nelumbo nucifera HOM05D000649 ORTHO05D000513 6.1e-23 111.3 79 63.3
Actinidia22858 Actinidia chinensis HOM05D000649 ORTHO05D000513 3.0e-22 109.0 80 66.2
Hma1.2p1_0085F.1_g044350 Hydrangea macrophylla HOM05D000649 ORTHO05D000513 6.8e-22 107.8 79 58.2
Atru.chr13.58 Acer truncatum HOM05D000649 ORTHO05D000513 1.5e-21 106.7 84 57.1
Manes.05G127900 Manihot esculenta HOM05D000649 ORTHO05D000513 2.0e-21 106.3 86 54.7
Prupe.5G005300 Prunus persica HOM05D000649 ORTHO05D000513 3.4e-21 105.5 106 46.2
TAR376G0834 Trochodendron aralioides HOM05D000649 ORTHO05D000513 5.7e-21 104.8 79 57.0
Hma1.2p1_0699F.1_g205730 Hydrangea macrophylla HOM05D000649 ORTHO05D000513 7.5e-21 104.4 86 52.3
Potri.002G004600 Populus trichocarpa HOM05D000649 ORTHO05D000513 1.7e-20 103.2 96 51.0
CiPaw.07G133300 Carya illinoinensis HOM05D000649 ORTHO05D000513 2.2e-20 102.8 79 55.7
MD06G1004000 Malus domestica HOM05D000649 ORTHO05D000513 6.3e-20 101.3 93 48.4
Cc10_g00240 Coffea canephora HOM05D000649 ORTHO05D000513 2.4e-19 99.4 98 44.9
Nitab4.5_0010897g0010 Nicotiana tabacum HOM05D000649 ORTHO05D000513 2.4e-19 99.4 79 54.4
Actinidia17079 Actinidia chinensis HOM05D000649 ORTHO05D000513 3.1e-19 99.0 79 54.4
Sopen04g036410 Solanum pennellii HOM05D000649 ORTHO05D000513 3.1e-19 99.0 86 50.0
PGSC0003DMG400009999 Solanum tuberosum HOM05D000649 ORTHO05D000513 3.1e-19 99.0 98 46.9
Haze_22865 Corylus avellana HOM05D000649 ORTHO05D000513 4.1e-19 98.6 79 51.9
MBI01_g28406_MAGBIO Magnolia biondii HOM05D000649 ORTHO05D000513 4.1e-19 98.6 108 50.0
Aqoxy6G02997 Aquilegia oxysepala HOM05D000649 ORTHO05D000513 5.4e-19 98.2 85 54.1
CSS0025109 Camellia sinensis var. sinensis HOM05D000649 ORTHO05D000513 5.4e-19 98.2 79 53.2
Glyma.06G014300 Glycine max HOM05D000649 ORTHO05D000513 5.4e-19 98.2 79 53.2
Nn6g31618 Nelumbo nucifera HOM05D000649 ORTHO05D000513 5.4e-19 98.2 79 58.2
Lalb_Chr08g0246551 Lupinus albus HOM05D000649 ORTHO05D000513 9.1e-19 97.4 86 47.7
Rhsim06G0003000 Rhododendron simsii HOM05D000649 ORTHO05D000513 9.1e-19 97.4 88 50.0
Sabra02G0003100 Salix brachista HOM05D000649 ORTHO05D000513 9.1e-19 97.4 96 47.9
Dinv13765 Davidia involucrata HOM05D000649 ORTHO05D000513 1.2e-18 97.1 79 53.2
Psat5g008440 Pisum sativum HOM05D000649 ORTHO05D000513 1.2e-18 97.1 86 48.8
THA.LOC104813737 Tarenaya hassleriana HOM05D000649 ORTHO05D000513 1.2e-18 97.1 77 51.9
VMungo1309G1435 Vigna mungo HOM05D000649 ORTHO05D000513 1.2e-18 97.1 79 51.9
Cfa014139 Carpinus fangiana HOM05D001065 ORTHO05D000513 1.6e-18 96.7 106 45.3
AL2G36600 Arabidopsis lyrata HOM05D000649 ORTHO05D000513 2.0e-18 96.3 84 48.8
Ca_04244_v3 Cicer arietinum L. HOM05D000649 ORTHO05D000513 2.0e-18 96.3 103 44.7
Ca_15383_v3 Cicer arietinum L. HOM05D000649 ORTHO05D000513 2.0e-18 96.3 103 44.7
Lj1g0016936 Lotus japonicus HOM05D000649 ORTHO05D000513 2.0e-18 96.3 86 47.7
arahy.Tifrunner.gnm1.ann1.T7FLND Arachis hypogaea HOM05D000649 ORTHO05D000513 2.7e-18 95.9 79 51.9
CiPaw.08G077300 Carya illinoinensis HOM05D000649 ORTHO05D000513 2.7e-18 95.9 97 45.4
COL.COLO4_12296 Corchorus olitorius HOM05D000649 ORTHO05D000513 2.7e-18 95.9 79 50.6
Eucgr.J02558 Eucalyptus grandis HOM05D000649 ORTHO05D000513 2.7e-18 95.9 79 51.9
Lalb_Chr23g0265501 Lupinus albus HOM05D000649 ORTHO05D000513 2.7e-18 95.9 72 54.2
Prupe.7G186900 Prunus persica HOM05D000649 ORTHO05D000513 2.7e-18 95.9 77 53.2
PSO675G8806 Papaver somniferum HOM05D000649 ORTHO05D000513 3.5e-18 95.5 100 44.0
CARHR070020 Cardamine hirsuta HOM05D000649 ORTHO05D000513 4.5e-18 95.1 77 51.9
Dinv05494 Davidia involucrata HOM05D000649 ORTHO05D000513 4.5e-18 95.1 79 49.4
TWI36G1513 Tripterygium wilfordii HOM05D000649 ORTHO05D000513 4.5e-18 95.1 79 54.4
Gohir.D01G086900 Gossypium hirsutum HOM05D000649 ORTHO05D000513 5.9e-18 94.7 104 45.2
Gorai.002G112500 Gossypium raimondii HOM05D000649 ORTHO05D000513 5.9e-18 94.7 104 45.2
Actinidia15526 Actinidia chinensis HOM05D000649 ORTHO05D000513 7.7e-18 94.4 79 51.9
Gohir.A01G101800 Gossypium hirsutum HOM05D000649 ORTHO05D000513 7.7e-18 94.4 105 45.7
Thecc.08G099600 Theobroma cacao HOM05D000649 ORTHO05D000513 7.7e-18 94.4 79 49.4
Lalb_Chr11g0061361 Lupinus albus HOM05D000649 ORTHO05D000513 1.0e-17 94.0 79 50.6
Manes.18G001800 Manihot esculenta HOM05D000649 ORTHO05D000513 1.0e-17 94.0 76 55.3
Carub.0002s2338 Capsella rubella HOM05D000649 ORTHO05D000513 1.3e-17 93.6 77 50.6
Glyma.04G014300 Glycine max HOM05D000649 ORTHO05D000513 1.3e-17 93.6 80 52.5
Lj2C505G3 Lonicera japonica HOM05D000649 ORTHO05D000513 1.3e-17 93.6 86 50.0
Medtr3g116130 Medicago truncatula HOM05D000649 ORTHO05D000513 1.3e-17 93.6 104 44.2
QL02p015755 Quercus lobata HOM05D000649 ORTHO05D000513 2.3e-17 92.8 74 52.7
Sp5g31630 Schrenkiella parvula HOM05D000649 ORTHO05D000513 2.3e-17 92.8 100 45.0
A07p42130 Brassica napus HOM05D000649 ORTHO05D000513 2.9e-17 92.4 77 51.9
AT1G76460 Arabidopsis thaliana HOM05D000649 ORTHO05D000513 3.8e-17 92.0 77 49.4
Thhalv10018983m.g Eutrema salsugineum HOM05D000649 ORTHO05D000513 3.8e-17 92.0 77 49.4
FAN23G1151 Fragaria x ananassa HOM05D000649 ORTHO05D000513 3.8e-17 92.0 81 50.6
FAN26G0796 Fragaria x ananassa HOM05D000649 ORTHO05D000513 3.8e-17 92.0 81 50.6
Sabra05G0198800 Salix brachista HOM05D000649 ORTHO05D000513 3.8e-17 92.0 78 51.3
Potri.005G256700 Populus trichocarpa HOM05D000649 ORTHO05D000513 5.0e-17 91.7 96 43.8
FvH4_1g09990 Fragaria vesca HOM05D000649 ORTHO05D000513 6.5e-17 91.3 84 50.0
Phvul.009G008600 Phaseolus vulgaris HOM05D000649 ORTHO05D000513 6.5e-17 91.3 79 50.6
Sc26g0004760 Simmondsia chinensis HOM05D000649 ORTHO05D000513 6.5e-17 91.3 77 50.6
THA.LOC104812008 Tarenaya hassleriana HOM05D000649 ORTHO05D000513 6.5e-17 91.3 77 48.1
FAN23G2635 Fragaria x ananassa HOM05D000649 ORTHO05D000513 8.6e-17 90.9 81 50.6
TWI56G0525 Tripterygium wilfordii HOM05D000649 ORTHO05D000513 8.6e-17 90.9 79 53.2
Duzib093G1313 Durio zibethinus HOM05D000649 ORTHO05D000513 1.1e-16 90.5 81 50.6
MD00G1148300 Malus domestica HOM05D000649 ORTHO05D000513 1.1e-16 90.5 108 41.7
DCAR_016799 Daucus carota HOM05D000649 ORTHO05D000513 1.5e-16 90.1 76 53.9
Ciclev10003364m.g Citrus clementina HOM05D000649 ORTHO05D000513 1.9e-16 89.7 77 49.4
ClCG08G009160 Citrullus lanatus HOM05D000649 ORTHO05D000513 2.5e-16 89.4 79 49.4
RcHm_v2.0_Chr2g0096781 Rosa chinensis HOM05D000649 ORTHO05D000513 2.5e-16 89.4 84 47.6
TWI12G0980 Tripterygium wilfordii HOM05D000649 ORTHO05D000513 2.5e-16 89.4 79 51.9
PSO541G2048 Papaver somniferum HOM05D000649 ORTHO05D000513 3.3e-16 89.0 100 41.0
TPR.G38167 Trifolium pratense HOM05D000649 ORTHO05D000513 7.2e-16 87.8 72 52.8
BcaC08g47242 Brassica carinata HOM05D000649 ORTHO05D000513 9.5e-16 87.4 77 49.4
C06p50700 Brassica napus HOM05D000649 ORTHO05D000513 9.5e-16 87.4 77 49.4
BolC6t40096H Brassica oleracea HOM05D000649 ORTHO05D000513 9.5e-16 87.4 77 49.4
MELO3C026514.2 Cucumis melo HOM05D000649 ORTHO05D000513 9.5e-16 87.4 79 48.1
CsaV3_6G035960 Cucumis sativus L. HOM05D000649 ORTHO05D000513 9.5e-16 87.4 79 48.1
Duzib116G0655 Durio zibethinus HOM05D000649 ORTHO05D000513 9.5e-16 87.4 77 46.8
Eucgr.I02201 Eucalyptus grandis HOM05D000649 ORTHO05D000513 9.5e-16 87.4 86 47.7
SalBow6G0043 Salvia bowleyana HOM05D000649 ORTHO05D000513 9.5e-16 87.4 100 40.0
BcaC08g47153 Brassica carinata HOM05D000649 ORTHO05D000513 2.8e-15 85.9 77 48.1
vmacro21765 Vaccinium macrocarpon HOM05D000649 ORTHO05D000513 2.8e-15 85.9 80 50.0
FAN28G0025 Fragaria x ananassa HOM05D000649 ORTHO05D000513 3.6e-15 85.5 84 48.8
Oeu039086.1 Olea europaea HOM05D000649 ORTHO05D014141 3.6e-15 85.5 74 50.0
arahy.Tifrunner.gnm1.ann1.63TST2 Arachis hypogaea HOM05D000649 ORTHO05D000513 4.7e-15 85.1 80 48.8
SGA_v2.0_scaffold220G42643 Striga asiatica HOM05D000649 ORTHO05D000513 4.7e-15 85.1 97 38.1
Aa31LG4G6550 Aethionema arabicum HOM05D000649 ORTHO05D000513 6.1e-15 84.7 78 47.4
DCAR_013943 Daucus carota HOM05D000649 ORTHO05D014141 6.1e-15 84.7 81 48.1
Sed0009990 Sechium edule HOM05D000649 ORTHO05D000513 6.1e-15 84.7 79 45.6
BraA07t31742Z Brassica rapa HOM05D000649 ORTHO05D000513 8.0e-15 84.3 77 48.1
HanXRQChr09g0241921 Helianthus annuus HOM05D000649 ORTHO05D000513 1.0e-14 84.0 79 50.6
Aa31LG7G5040 Aethionema arabicum HOM05D000649 ORTHO05D000513 1.4e-14 83.6 106 41.5
PGR083G0393 Punica granatum HOM05D000649 ORTHO05D000513 1.4e-14 83.6 94 45.7
Migut.N02989 Erythranthe guttata HOM05D000649 ORTHO05D000513 3.0e-14 82.4 77 42.9
PSO017G1691 Papaver somniferum HOM05D000649 ORTHO05D000513 3.0e-14 82.4 79 49.4
HanXRQChr16g0532161 Helianthus annuus HOM05D000649 ORTHO05D000513 4.0e-14 82.0 85 43.5
ATR0605G253 Amborella trichopoda HOM05D000649 ORTHO05D000513 6.8e-14 81.3 70 47.1
CDE05G1430 Ceratophyllum demersum HOM05D000649 ORTHO05D000513 6.8e-14 81.3 70 45.7
ECA246G2133 Erigeron canadensis HOM05D000649 ORTHO05D000513 6.8e-14 81.3 85 42.4
CANSAT25G2852 Cannabis sativa HOM05D000649 ORTHO05D000513 8.9e-14 80.9 79 45.6
PSO170G5065 Papaver somniferum HOM05D000649 ORTHO05D000513 8.9e-14 80.9 79 48.1
unitig_578.g16241 Utricularia gibba HOM05D000649 ORTHO05D000513 8.9e-14 80.9 84 42.9
MD15G1228000 Malus domestica HOM05D000649 ORTHO05D000513 1.2e-13 80.5 73 50.7
Eucgr.F03603 Eucalyptus grandis HOM05D000649 ORTHO05D000513 1.5e-13 80.1 85 47.1
AUR62035172 Chenopodium quinoa HOM05D000649 ORTHO05D000513 3.4e-13 79.0 98 42.9
MSTRG.24518 Avicennia marina HOM05D000649 ORTHO05D000513 4.4e-13 78.6 84 38.1
ECA232G1614 Erigeron canadensis HOM05D000649 ORTHO05D000513 4.4e-13 78.6 79 49.4
CDE05G1023 Ceratophyllum demersum HOM05D000649 ORTHO05D000513 5.7e-13 78.2 70 45.7
RcHm_v2.0_Chr7g0216701 Rosa chinensis HOM05D000649 ORTHO05D000513 5.7e-13 78.2 77 48.1
MSTRG.22081 Avicennia marina HOM05D000649 ORTHO05D000513 7.5e-13 77.8 96 42.7
Ciclev10026337m.g Citrus clementina HOM05D000649 ORTHO05D000513 7.5e-13 77.8 81 40.7
Thhalv10008444m.g Eutrema salsugineum HOM05D000649 ORTHO05D000513 7.5e-13 77.8 99 42.4
Oeu042506.1 Olea europaea HOM05D000649 ORTHO05D000513 7.5e-13 77.8 93 38.7
Lj4C242G3 Lonicera japonica HOM05D000649 ORTHO05D000513 9.8e-13 77.4 74 45.9
Oeu030360.2 Olea europaea HOM05D000649 ORTHO05D000513 9.8e-13 77.4 70 50.0
MD02G1108800 Malus domestica HOM05D000649 ORTHO05D000513 1.3e-12 77.0 73 47.9
Sed0025783 Sechium edule HOM05D000649 ORTHO05D000513 1.7e-12 76.6 79 43.0
ECA238G0875 Erigeron canadensis HOM05D000649 ORTHO05D000513 2.8e-12 75.9 100 37.0
Manes.02G116700 Manihot esculenta HOM05D000649 ORTHO05D000513 3.7e-12 75.5 81 45.7
DCAR_009860 Daucus carota HOM05D000649 ORTHO05D000513 4.9e-12 75.1 80 46.2
MBI04_g31210_MAGBIO Magnolia biondii HOM05D000649 ORTHO05D000513 4.9e-12 75.1 52 57.7
AL1G33900 Arabidopsis lyrata HOM05D000649 ORTHO05D000513 6.3e-12 74.7 100 41.0
AT1G20880 Arabidopsis thaliana HOM05D000649 ORTHO05D000513 6.3e-12 74.7 58 56.9
Cc07_g12210 Coffea canephora HOM05D000649 ORTHO05D000513 8.3e-12 74.3 65 50.8
Oeu013568.1 Olea europaea HOM05D000649 ORTHO05D000513 1.4e-11 73.6 74 41.9
FAN18G2507 Fragaria x ananassa HOM05D000649 ORTHO05D000513 3.1e-11 72.4 87 41.4
PGR031G0467 Punica granatum HOM05D000649 ORTHO05D000513 3.1e-11 72.4 96 35.4
Carub.0001s2035 Capsella rubella HOM05D000649 ORTHO05D000513 4.1e-11 72.0 92 39.1
Lsat_1_v5_gn_9_48300 Lactuca sativa HOM05D000649 ORTHO05D000513 1.2e-10 70.5 85 45.9
FAN04G1603 Fragaria x ananassa HOM05D000649 ORTHO05D000513 1.6e-10 70.1 87 40.2
Lj4A240G32 Lonicera japonica HOM05D000649 ORTHO05D000513 1.6e-10 70.1 69 44.9
FAN13G1717 Fragaria x ananassa HOM05D000649 ORTHO05D000513 3.5e-10 68.9 79 43.0
FvH4_5g26080 Fragaria vesca HOM05D000649 ORTHO05D000513 4.5e-10 68.6 79 43.0
Eucgr.F01820 Eucalyptus grandis HOM05D000649 ORTHO05D000513 5.9e-10 68.2 77 42.9
SEGI_17423 Sequoiadendron giganteum HOM05D000649 ORTHO05D000513 5.9e-10 68.2 66 42.4
unitig_8.g4815 Utricularia gibba HOM05D000649 ORTHO05D000513 5.9e-10 68.2 68 41.2
BraA08t34853Z Brassica rapa HOM05D000649 ORTHO05D000513 7.8e-10 67.8 81 40.7
HPP92_020532 Vanilla planifolia HOM05D000649 ORTHO05D014141 7.8e-10 67.8 63 42.9
FAN08G0068 Fragaria x ananassa HOM05D000649 ORTHO05D000513 1.0e-09 67.4 89 40.4
BcaB03g14296 Brassica carinata HOM05D000649 ORTHO05D000513 1.7e-09 66.6 82 40.2
CARHR021310 Cardamine hirsuta HOM05D000649 ORTHO05D000513 6.6e-09 64.7 95 40.0
SGA_v2.0_scaffold227G43163 Striga asiatica HOM05D000649 ORTHO05D000513 6.6e-09 64.7 95 32.6
Hma1.2p1_0711F.1_g207530 Hydrangea macrophylla HOM05D000649 ORTHO05D014141 8.6e-09 64.3 45 57.8
BcaC07g39059 Brassica carinata HOM05D000649 ORTHO05D000513 1.5e-08 63.5 80 37.5
BcaB07g32083 Brassica carinata HOM05D000649 ORTHO05D000513 3.3e-08 62.4 83 37.3
C08p20430 Brassica napus HOM05D000649 ORTHO05D000513 4.3e-08 62.0 80 36.2
BolC8t49672H Brassica oleracea HOM05D000649 ORTHO05D000513 4.3e-08 62.0 80 36.2
BcaC06g34844 Brassica carinata HOM05D000649 ORTHO05D000513 2.8e-07 59.3 55 45.5
C07p22740 Brassica napus HOM05D000649 ORTHO05D000513 2.8e-07 59.3 55 45.5
BolC7t42806H Brassica oleracea HOM05D000649 ORTHO05D000513 2.8e-07 59.3 55 45.5
Lsat_1_v5_gn_3_69020 Lactuca sativa HOM05D000649 ORTHO05D000513 3.6e-07 58.9 86 39.5
Lsat_1_v5_gn_8_114060 Lactuca sativa HOM05D000649 ORTHO05D000513 3.6e-07 58.9 58 48.3
A07p15430 Brassica napus HOM05D000649 ORTHO05D000513 6.1e-07 58.2 85 35.3
BraA07t29282Z Brassica rapa HOM05D000649 ORTHO05D000513 6.1e-07 58.2 85 35.3
SHI07953 Sapria himalayana HOM05D000649 ORTHO05D000513 6.1e-07 58.2 100 33.0
Os02g0714000 Oryza sativa ssp. japonica HOM05D000649 ORTHO05D000513 1.0e-06 57.4 96 33.3
EL10Ac1g01869 Beta vulgaris HOM05D000649 ORTHO05D000513 1.4e-06 57.0 92 39.1
Zm00001eb388030 Zea mays HOM05D000649 ORTHO05D000513 2.3e-06 56.2 90 36.7
A08p29180 Brassica napus HOM05D000649 ORTHO05D000513 5.2e-06 55.1 81 37.0
Os06g0622900 Oryza sativa ssp. japonica HOM05D000649 ORTHO05D000513 5.2e-06 55.1 99 33.3
Nitab4.5_0007250g0010 Nicotiana tabacum HOM05D000649 ORTHO05D000513 6.8e-06 54.7 67 40.3
PGR119G0463 Punica granatum HOM05D000649 ORTHO05D000513 8.9e-06 54.3 95 34.7


User provided reference genes

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