Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0033643 Camellia sinensis var. sinensis HOM05D006354 ORTHO05D007773 1.5e-71 272.7 136 100.0
CSS0043047 Camellia sinensis var. sinensis HOM05D006354 ORTHO05D007773 2.3e-59 232.3 126 91.3
CSS0045073 Camellia sinensis var. sinensis HOM05D006354 ORTHO05D007773 2.3e-59 232.3 126 91.3
vmacro14519 Vaccinium macrocarpon HOM05D006354 ORTHO05D007773 2.0e-55 219.2 126 81.7
Rhsim01G0227400 Rhododendron simsii HOM05D006354 ORTHO05D007773 4.9e-54 214.5 126 81.0
Actinidia23941 Actinidia chinensis HOM05D006354 ORTHO05D007773 6.4e-54 214.2 126 81.0
AUR62009573 Chenopodium quinoa HOM05D006354 ORTHO05D007773 4.6e-52 208.0 126 79.4
Haze_12045 Corylus avellana HOM05D002216 ORTHO05D007773 1.7e-51 206.1 135 74.8
GSVIVG01024964001 Vitis vinifera HOM05D006354 ORTHO05D007773 1.7e-51 206.1 126 79.4
AUR62001785 Chenopodium quinoa HOM05D006354 ORTHO05D007773 2.3e-51 205.7 126 78.6
QL01p032009 Quercus lobata HOM05D006354 ORTHO05D007773 3.0e-51 205.3 126 77.8
Sc06g0008310 Simmondsia chinensis HOM05D006354 ORTHO05D007773 3.9e-51 204.9 126 77.8
Hma1.2p1_0418F.1_g149110 Hydrangea macrophylla HOM05D006354 ORTHO05D007773 5.1e-51 204.5 126 77.8
Nitab4.5_0004018g0070 Nicotiana tabacum HOM05D006354 ORTHO05D007773 5.1e-51 204.5 126 76.2
PSO151G0044 Papaver somniferum HOM05D006354 ORTHO05D007773 5.1e-51 204.5 126 78.6
Oeu019195.1 Olea europaea HOM05D006354 ORTHO05D007773 6.6e-51 204.1 126 76.2
PGSC0003DMG402026981 Solanum tuberosum HOM05D006354 ORTHO05D007773 1.1e-50 203.4 126 74.6
Cfa009012 Carpinus fangiana HOM05D002216 ORTHO05D007773 1.5e-50 203.0 135 73.3
DCAR_018909 Daucus carota HOM05D006354 ORTHO05D007773 1.5e-50 203.0 126 78.6
CANSAT54G2536 Cannabis sativa HOM05D006354 ORTHO05D007773 2.5e-50 202.2 126 77.8
Ah.06g184240 Amaranthus hybridus HOM05D006354 ORTHO05D007773 3.3e-50 201.8 126 77.0
Lalb_Chr17g0347271 Lupinus albus HOM05D006354 ORTHO05D007773 4.3e-50 201.4 126 77.0
CAN.G1046.5 Capsicum annuum HOM05D006354 ORTHO05D007773 5.6e-50 201.1 126 73.8
Thecc.10G082700 Theobroma cacao HOM05D006354 ORTHO05D007773 5.6e-50 201.1 126 78.6
HanXRQChr08g0235771 Helianthus annuus HOM05D006354 ORTHO05D007773 7.3e-50 200.7 126 74.6
Nitab4.5_0002726g0010 Nicotiana tabacum HOM05D004808 ORTHO05D007773 7.3e-50 200.7 126 74.6
Potri.009G030900 Populus trichocarpa HOM05D006354 ORTHO05D007773 9.6e-50 200.3 126 77.8
Solyc06g071900.3 Solanum lycopersicum HOM05D006354 ORTHO05D007773 1.3e-49 199.9 126 73.8
Sopen06g028180 Solanum pennellii HOM05D006354 ORTHO05D007773 1.3e-49 199.9 126 73.8
Glyma.15G038300 Glycine max HOM05D006354 ORTHO05D007773 1.6e-49 199.5 126 77.8
CiPaw.13G094400 Carya illinoinensis HOM05D006354 ORTHO05D007773 2.1e-49 199.1 126 77.8
Sabra09G0021800 Salix brachista HOM05D006354 ORTHO05D007773 2.1e-49 199.1 126 77.0
SalBow3G3492 Salvia bowleyana HOM05D006354 ORTHO05D007773 2.8e-49 198.7 126 74.6
MSTRG.18578 Avicennia marina HOM05D006354 ORTHO05D007773 3.6e-49 198.4 135 71.9
PSO339G2149 Papaver somniferum HOM05D006354 ORTHO05D007773 3.6e-49 198.4 126 76.2
Peaxi162Scf00046g10227 Petunia axillaris HOM05D006354 ORTHO05D007773 8.1e-49 197.2 126 73.0
Cpa.g.sc81.152 Carica papaya HOM05D006354 ORTHO05D007773 1.1e-48 196.8 126 75.4
Cc01_g12860 Coffea canephora HOM05D006354 ORTHO05D007773 1.1e-48 196.8 126 74.6
Hund18908 Selenicereus undatus HOM05D006354 ORTHO05D007773 1.1e-48 196.8 126 75.4
THA.LOC104800659 Tarenaya hassleriana HOM05D006354 ORTHO05D007773 3.1e-48 195.3 126 76.2
Gorai.001G110600 Gossypium raimondii HOM05D006354 ORTHO05D007773 4.0e-48 194.9 126 74.6
Duzib168G1732 Durio zibethinus HOM05D006354 ORTHO05D007773 5.3e-48 194.5 126 75.4
PGR083G0842 Punica granatum HOM05D006354 ORTHO05D007773 6.9e-48 194.1 126 73.0
TWI79G1739 Tripterygium wilfordii HOM05D006354 ORTHO05D007773 6.9e-48 194.1 126 74.6
Prupe.6G077700 Prunus persica HOM05D006354 ORTHO05D007773 9.0e-48 193.7 126 75.4
Ca_01327_v3 Cicer arietinum L. HOM05D006354 ORTHO05D007773 1.2e-47 193.4 126 73.8
Ciclev10028134m.g Citrus clementina HOM05D006354 ORTHO05D007773 1.5e-47 193.0 126 73.8
Eucgr.H04667 Eucalyptus grandis HOM05D006354 ORTHO05D007773 1.5e-47 193.0 126 72.2
Gohir.A07G098400 Gossypium hirsutum HOM05D006354 ORTHO05D007773 2.0e-47 192.6 126 73.8
Manes.01G174100 Manihot esculenta HOM05D006354 ORTHO05D007773 2.0e-47 192.6 126 76.2
ECA238G1940 Erigeron canadensis HOM05D006354 ORTHO05D007773 2.6e-47 192.2 126 73.0
Psat5g284560 Pisum sativum HOM05D006354 ORTHO05D007773 2.6e-47 192.2 126 73.0
Manes.07G091301 Manihot esculenta HOM05D006354 ORTHO05D007773 3.4e-47 191.8 126 76.2
Atru.BG.120.p Acer truncatum HOM05D006354 ORTHO05D007773 4.5e-47 191.4 126 73.0
Manes.07G090800 Manihot esculenta HOM05D006354 ORTHO05D007773 4.5e-47 191.4 126 76.2
Lsat_1_v5_gn_9_23500 Lactuca sativa HOM05D006354 ORTHO05D007773 5.8e-47 191.0 126 71.4
Medtr2g096880 Medicago truncatula HOM05D006354 ORTHO05D007773 5.8e-47 191.0 126 73.0
ClCG02G020110 Citrullus lanatus HOM05D006354 ORTHO05D007773 7.6e-47 190.7 126 72.2
Migut.D02102 Erythranthe guttata HOM05D006354 ORTHO05D007773 9.9e-47 190.3 126 69.8
DCAR_005337 Daucus carota HOM05D006354 ORTHO05D007773 1.7e-46 189.5 126 73.0
CsaV3_6G016810 Cucumis sativus L. HOM05D006354 ORTHO05D007773 2.2e-46 189.1 126 72.2
MELO3C025913.2 Cucumis melo HOM05D006354 ORTHO05D007773 3.8e-46 188.3 126 71.4
TPR.G34321 Trifolium pratense HOM05D006354 ORTHO05D007773 3.8e-46 188.3 126 72.2
FAN16G3445 Fragaria x ananassa HOM05D006354 ORTHO05D007773 8.4e-46 187.2 126 71.4
FAN21G2277 Fragaria x ananassa HOM05D006354 ORTHO05D007773 8.4e-46 187.2 126 71.4
TAR633G1968 Trochodendron aralioides HOM05D006354 ORTHO05D007773 2.4e-45 185.7 126 73.0
RcHm_v2.0_Chr5g0064501 Rosa chinensis HOM05D006354 ORTHO05D007773 3.2e-45 185.3 126 71.4
FAN25G3661 Fragaria x ananassa HOM05D006354 ORTHO05D007773 9.3e-45 183.7 123 71.5
FvH4_3g36060 Fragaria vesca HOM05D006354 ORTHO05D007773 1.6e-44 183.0 126 69.0
Phvul.L005443 Phaseolus vulgaris HOM05D006354 ORTHO05D007773 1.6e-44 183.0 126 71.4
MBI16_g22330_MAGBIO Magnolia biondii HOM05D006354 ORTHO05D007773 2.1e-44 182.6 136 66.9
MBI16_g39932_MAGBIO Magnolia biondii HOM05D006354 ORTHO05D007773 2.1e-44 182.6 136 66.9
FAN11G1115 Fragaria x ananassa HOM05D006354 ORTHO05D007773 3.5e-44 181.8 126 69.0
Sed0005059 Sechium edule HOM05D006354 ORTHO05D007773 4.6e-44 181.4 126 68.3
Dinv17001 Davidia involucrata HOM05D006354 ORTHO05D007773 5.1e-43 177.9 126 70.6
Dinv42950 Davidia involucrata HOM05D006354 ORTHO05D007773 5.1e-43 177.9 126 70.6
Dinv43150 Davidia involucrata HOM05D006354 ORTHO05D007773 5.1e-43 177.9 126 70.6
Lj3g0014698 Lotus japonicus HOM05D006354 ORTHO05D007773 6.7e-43 177.6 127 69.3
SHI07598 Sapria himalayana HOM05D006354 ORTHO05D007773 1.1e-42 176.8 126 68.3
Sed0003888 Sechium edule HOM05D006354 ORTHO05D007773 1.5e-42 176.4 126 68.3
arahy.Tifrunner.gnm1.ann1.J6ZHUK Arachis hypogaea HOM05D006354 ORTHO05D007773 3.3e-42 175.3 126 67.5
AL1G17770 Arabidopsis lyrata HOM05D006354 ORTHO05D007773 9.6e-42 173.7 126 65.1
COL.COLO4_17142 Corchorus olitorius HOM05D006354 ORTHO05D007773 9.6e-42 173.7 126 68.3
Carub.0001s0691 Capsella rubella HOM05D006354 ORTHO05D007773 1.3e-41 173.3 126 65.1
Thhalv10007326m.g Eutrema salsugineum HOM05D006354 ORTHO05D007773 1.3e-41 173.3 126 65.1
Aa31sc13G80 Aethionema arabicum HOM05D006354 ORTHO05D007773 2.8e-41 172.2 126 65.1
AT1G07590 Arabidopsis thaliana HOM05D006354 ORTHO05D007773 4.8e-41 171.4 126 64.3
BcaC07g41984 Brassica carinata HOM05D006354 ORTHO05D007773 1.1e-40 170.2 126 63.5
C08p50450 Brassica napus HOM05D006354 ORTHO05D007773 1.1e-40 170.2 126 63.5
BolC8t52573H Brassica oleracea HOM05D006354 ORTHO05D007773 1.1e-40 170.2 126 63.5
CARHR007380 Cardamine hirsuta HOM05D006354 ORTHO05D007773 1.4e-40 169.9 126 64.3
Sp1g06320 Schrenkiella parvula HOM05D006354 ORTHO05D007773 1.4e-40 169.9 126 63.5
BcaC07g42486 Brassica carinata HOM05D006354 ORTHO05D007773 3.1e-40 168.7 126 62.7
BraA09t41965Z Brassica rapa HOM05D006354 ORTHO05D007773 9.0e-40 167.2 126 62.7
A09p66280 Brassica napus HOM05D006354 ORTHO05D007773 1.5e-39 166.4 126 61.9
ATR0827G002 Amborella trichopoda HOM05D006354 ORTHO05D007773 8.4e-38 160.6 125 62.4
EL10Ac7g16019 Beta vulgaris HOM05D006354 ORTHO05D007773 7.1e-37 157.5 126 62.7
Glyma.13G336000 Glycine max HOM05D006354 ORTHO05D007773 2.1e-36 156.0 126 63.5
Gohir.D07G102700 Gossypium hirsutum HOM05D006354 ORTHO05D007773 1.6e-33 146.4 126 60.3
Lj2A1062T49 Lonicera japonica HOM05D006354 ORTHO05D007773 2.8e-33 145.6 126 57.9
Zm00001eb415510 Zea mays HOM05D006354 ORTHO05D007773 1.2e-31 140.2 126 54.8
Nn5g26915 Nelumbo nucifera HOM05D006354 ORTHO05D007773 7.9e-28 127.5 126 55.6
Aqoxy2G02124 Aquilegia oxysepala HOM05D006354 ORTHO05D007773 1.0e-27 127.1 126 55.6
MD11G1109000 Malus domestica HOM05D006354 ORTHO05D007773 2.5e-26 122.5 126 51.6
Aqoxy455s003 Aquilegia oxysepala HOM05D006354 ORTHO05D007773 1.5e-15 86.7 53 77.4
CSS0006994 Camellia sinensis var. sinensis HOM05D006354 ORTHO05D007773 1.3e-14 83.6 54 77.8
CSS0032384 Camellia sinensis var. sinensis HOM05D006354 ORTHO05D007773 1.3e-14 83.6 54 77.8
unitig_746.g26734 Utricularia gibba HOM05D006354 ORTHO05D007773 7.2e-13 77.8 53 64.2
CDE06G1477 Ceratophyllum demersum HOM05D006354 ORTHO05D007773 6.7e-11 71.2 53 60.4
VMungo1080G0880 Vigna mungo HOM05D006354 ORTHO05D007773 1.5e-10 70.1 40 82.5
Aqoxy455s002 Aquilegia oxysepala HOM05D006354 ORTHO05D007773 3.7e-09 65.5 48 68.8
SalBow6G3249 Salvia bowleyana HOM05D002649 ORTHO05D002838 7.0e-08 61.2 126 31.0
TPR.G7614 Trifolium pratense HOM05D002649 ORTHO05D002838 3.4e-07 58.9 131 33.6
Gohir.A12G005300 Gossypium hirsutum HOM05D000300 ORTHO05D000383 1.0e-06 57.4 117 26.5
HPP92_012951 Vanilla planifolia HOM05D002649 ORTHO05D002838 1.0e-06 57.4 115 30.4
HPP92_018350 Vanilla planifolia HOM05D002649 ORTHO05D002838 2.9e-06 55.8 114 29.8
Gohir.D12G004800 Gossypium hirsutum HOM05D000300 ORTHO05D000383 3.8e-06 55.5 117 26.5
Gorai.008G004700 Gossypium raimondii HOM05D000300 ORTHO05D000383 3.8e-06 55.5 117 26.5
Pp3c21_11730 Physcomitrium patens HOM05D000300 ORTHO05D002838 6.5e-06 54.7 126 28.6
TAR369G0504 Trochodendron aralioides HOM05D002649 ORTHO05D002838 6.5e-06 54.7 126 30.2
unitig_0.g604 Utricularia gibba HOM05D002649 ORTHO05D002838 8.5e-06 54.3 126 28.6


User provided reference genes

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