Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0033619 Camellia sinensis var. sinensis HOM05D004802 ORTHO05D005591 3.0e-70 268.5 144 100.0
vmacro16596 Vaccinium macrocarpon HOM05D004802 ORTHO05D005591 2.7e-66 255.4 144 93.8
Rhsim12G0162600 Rhododendron simsii HOM05D004802 ORTHO05D005591 6.5e-65 250.8 144 93.8
CsaV3_1G001710 Cucumis sativus L. HOM05D004802 ORTHO05D005591 7.2e-64 247.3 144 84.7
MBI18_g21823_MAGBIO Magnolia biondii HOM05D004802 ORTHO05D005591 4.7e-63 244.6 144 89.6
SGA_v2.0_scaffold114G31844 Striga asiatica HOM05D004802 ORTHO05D005591 8.0e-63 243.8 144 90.3
CANSAT80G2080 Cannabis sativa HOM05D004802 ORTHO05D005591 1.8e-62 242.7 144 89.6
ECA232G0284 Erigeron canadensis HOM05D004802 ORTHO05D005591 2.3e-62 242.3 144 81.9
Cfa019082 Carpinus fangiana HOM05D004802 ORTHO05D005591 3.0e-62 241.9 144 85.4
Sed0010100 Sechium edule HOM05D004802 ORTHO05D005591 1.2e-61 240.0 144 82.6
Lsat_1_v5_gn_5_17000 Lactuca sativa HOM05D004802 ORTHO05D005591 9.8e-61 236.9 144 79.9
Glyma.04G171700 Glycine max HOM05D004802 ORTHO05D005591 2.2e-60 235.7 144 81.2
GSVIVG01007807001 Vitis vinifera HOM05D004802 ORTHO05D005591 2.2e-60 235.7 144 81.9
MSTRG.23103 Avicennia marina HOM05D004802 ORTHO05D005591 3.7e-60 235.0 144 82.6
Cpa.g.sc110.33 Carica papaya HOM05D004802 ORTHO05D005591 3.7e-60 235.0 144 81.2
HanXRQChr05g0155531 Helianthus annuus HOM05D004802 ORTHO05D005591 3.7e-60 235.0 144 80.6
Hma1.2p1_0483F.1_g162710 Hydrangea macrophylla HOM05D004802 ORTHO05D005591 4.9e-60 234.6 144 82.6
Migut.D01783 Erythranthe guttata HOM05D004802 ORTHO05D005591 6.3e-60 234.2 144 81.2
DCAR_021562 Daucus carota HOM05D004802 ORTHO05D005591 1.4e-59 233.0 144 80.6
Glyma.06G192200 Glycine max HOM05D004802 ORTHO05D005591 1.8e-59 232.6 144 81.2
DCAR_016496 Daucus carota HOM05D004802 ORTHO05D005591 2.4e-59 232.3 144 79.9
TAR362G1012 Trochodendron aralioides HOM05D004802 ORTHO05D005591 3.1e-59 231.9 144 80.6
QL03p066954 Quercus lobata HOM05D004802 ORTHO05D005591 4.1e-59 231.5 143 82.5
MD14G1184900 Malus domestica HOM05D004802 ORTHO05D005591 9.2e-59 230.3 143 83.2
Eucgr.B00348 Eucalyptus grandis HOM05D004802 ORTHO05D005591 2.7e-58 228.8 146 78.8
PGR083G1798 Punica granatum HOM05D004802 ORTHO05D005591 3.5e-58 228.4 144 80.6
Potri.014G111100 Populus trichocarpa HOM05D004802 ORTHO05D005591 7.8e-58 227.3 144 79.2
Prupe.5G177600 Prunus persica HOM05D004802 ORTHO05D005591 7.8e-58 227.3 144 79.2
RcHm_v2.0_Chr7g0179521 Rosa chinensis HOM05D004802 ORTHO05D005591 1.0e-57 226.9 144 79.9
Lalb_Chr23g0265291 Lupinus albus HOM05D004802 ORTHO05D005591 1.3e-57 226.5 150 76.7
Nitab4.5_0000499g0020 Nicotiana tabacum HOM05D004802 ORTHO05D005591 1.3e-57 226.5 144 78.5
ATR0796G060 Amborella trichopoda HOM05D004802 ORTHO05D005591 1.7e-57 226.1 144 77.8
Sc12g0005500 Simmondsia chinensis HOM05D004802 ORTHO05D005591 1.7e-57 226.1 144 77.1
Actinidia34948 Actinidia chinensis HOM05D004802 ORTHO05D005591 2.3e-57 225.7 132 84.8
MBI19_g12136_MAGBIO Magnolia biondii HOM05D004802 ORTHO05D005591 2.3e-57 225.7 144 79.9
Sc16g0001640 Simmondsia chinensis HOM05D004802 ORTHO05D005591 2.3e-57 225.7 145 82.8
arahy.Tifrunner.gnm1.ann1.J5PS4T Arachis hypogaea HOM05D004802 ORTHO05D005591 3.8e-57 224.9 146 78.1
Aqoxy5G00387 Aquilegia oxysepala HOM05D004802 ORTHO05D005591 5.0e-57 224.6 144 78.5
LjContig00081g0027263 Lotus japonicus HOM05D004802 ORTHO05D005591 5.0e-57 224.6 144 79.2
arahy.Tifrunner.gnm1.ann1.H02ACK Arachis hypogaea HOM05D004802 ORTHO05D005591 6.6e-57 224.2 146 78.1
CDE01G0824 Ceratophyllum demersum HOM05D004802 ORTHO05D005591 6.6e-57 224.2 145 77.9
PGSC0003DMG400024483 Solanum tuberosum HOM05D004802 ORTHO05D005591 8.6e-57 223.8 144 84.7
SalBow2G1273 Salvia bowleyana HOM05D004802 ORTHO05D005591 1.1e-56 223.4 145 80.7
Sp1g06517 Schrenkiella parvula HOM05D004802 ORTHO05D005591 1.5e-56 223.0 144 77.1
Solyc03g114050.3 Solanum lycopersicum HOM05D004802 ORTHO05D005591 1.5e-56 223.0 144 80.6
Sopen03g033100 Solanum pennellii HOM05D004802 ORTHO05D005591 1.5e-56 223.0 144 80.6
VMungo1309G2385 Vigna mungo HOM05D004802 ORTHO05D005591 1.5e-56 223.0 144 78.5
PSO170G0191 Papaver somniferum HOM05D004802 ORTHO05D005591 2.5e-56 222.2 148 75.7
A09p66160 Brassica napus HOM05D004802 ORTHO05D005591 3.3e-56 221.9 144 77.8
BraA09t41954Z Brassica rapa HOM05D004802 ORTHO05D005591 3.3e-56 221.9 144 77.8
Carub.0005s0629 Capsella rubella HOM05D004802 ORTHO05D005591 4.3e-56 221.5 145 80.0
PSO782G1633 Papaver somniferum HOM05D004802 ORTHO05D005591 5.6e-56 221.1 148 75.0
Phvul.009G188900 Phaseolus vulgaris HOM05D004802 ORTHO05D005591 5.6e-56 221.1 144 77.8
AL1G18110 Arabidopsis lyrata HOM05D004802 ORTHO05D005591 7.3e-56 220.7 144 75.7
Cc00_g03600 Coffea canephora HOM05D004802 ORTHO05D005591 7.3e-56 220.7 143 84.6
THA.LOC104818227 Tarenaya hassleriana HOM05D004802 ORTHO05D005591 1.2e-55 219.9 146 76.0
Dinv41117 Davidia involucrata HOM05D001600 ORTHO05D001502 1.6e-55 219.5 131 83.2
Actinidia19087 Actinidia chinensis HOM05D004802 ORTHO05D005591 2.1e-55 219.2 132 83.3
CARHR007640 Cardamine hirsuta HOM05D004802 ORTHO05D005591 2.1e-55 219.2 144 75.0
THA.LOC104821462 Tarenaya hassleriana HOM05D004802 ORTHO05D005591 2.1e-55 219.2 146 78.1
Manes.12G158200 Manihot esculenta HOM05D004802 ORTHO05D005591 2.8e-55 218.8 144 77.8
Aa31LG3G15940 Aethionema arabicum HOM05D004802 ORTHO05D005591 3.6e-55 218.4 146 80.8
BcaC07g41973 Brassica carinata HOM05D004802 ORTHO05D005591 6.1e-55 217.6 148 75.0
C08p50320 Brassica napus HOM05D004802 ORTHO05D005591 6.1e-55 217.6 148 75.0
BolC8t52561H Brassica oleracea HOM05D004802 ORTHO05D005591 6.1e-55 217.6 148 75.0
Oeu026523.1 Olea europaea HOM05D004802 ORTHO05D005591 6.1e-55 217.6 145 77.9
BcaB02g06722 Brassica carinata HOM05D004802 ORTHO05D005591 8.0e-55 217.2 147 78.2
Psat2g170440 Pisum sativum HOM05D004802 ORTHO05D005591 8.0e-55 217.2 144 75.0
BraA06t23701Z Brassica rapa HOM05D004802 ORTHO05D005591 1.0e-54 216.9 145 75.9
COL.COLO4_24762 Corchorus olitorius HOM05D004802 ORTHO05D005591 1.0e-54 216.9 145 84.1
BolC5t29353H Brassica oleracea HOM05D000129 ORTHO05D005591 1.4e-54 216.5 145 75.2
TPR.G6374 Trifolium pratense HOM05D004802 ORTHO05D005591 1.4e-54 216.5 144 75.0
AT1G07830 Arabidopsis thaliana HOM05D004802 ORTHO05D005591 1.8e-54 216.1 145 77.2
unitig_27.g24928 Utricularia gibba HOM05D004802 ORTHO05D005591 1.8e-54 216.1 144 76.4
Ah.08g213760 Amaranthus hybridus HOM05D004802 ORTHO05D005591 2.3e-54 215.7 144 75.7
Aqoxy3G02494 Aquilegia oxysepala HOM05D004802 ORTHO05D005591 2.3e-54 215.7 145 77.2
BcaC07g42500 Brassica carinata HOM05D004802 ORTHO05D005591 2.3e-54 215.7 147 79.6
Hund18328 Selenicereus undatus HOM05D004802 ORTHO05D005591 2.3e-54 215.7 140 79.3
TWI75G1644 Tripterygium wilfordii HOM05D004802 ORTHO05D005591 2.3e-54 215.7 144 79.9
TPR.G20968 Trifolium pratense HOM05D004802 ORTHO05D005591 3.0e-54 215.3 144 74.3
Ciclev10022742m.g Citrus clementina HOM05D004802 ORTHO05D005591 4.0e-54 214.9 145 82.8
AUR62025410 Chenopodium quinoa HOM05D004802 ORTHO05D005591 5.2e-54 214.5 145 77.2
TWI32G0003 Tripterygium wilfordii HOM05D004802 ORTHO05D005591 5.2e-54 214.5 144 78.5
HPP92_014441 Vanilla planifolia HOM05D004802 ORTHO05D005591 6.8e-54 214.2 144 74.3
Thhalv10009035m.g Eutrema salsugineum HOM05D004802 ORTHO05D005591 8.9e-54 213.8 145 80.0
HanXRQChr05g0163301 Helianthus annuus HOM05D004802 ORTHO05D005591 8.9e-54 213.8 147 76.9
HanXRQChr05g0163571 Helianthus annuus HOM05D004802 ORTHO05D005591 8.9e-54 213.8 147 76.9
MD06G1178500 Malus domestica HOM05D004802 ORTHO05D005591 1.5e-53 213.0 113 91.2
Thecc.03G006700 Theobroma cacao HOM05D004802 ORTHO05D005591 1.5e-53 213.0 145 80.0
Duzib068G0850 Durio zibethinus HOM05D004802 ORTHO05D005591 2.0e-53 212.6 148 81.8
Aqoxy3G01788 Aquilegia oxysepala HOM05D004802 ORTHO05D005591 2.6e-53 212.2 146 78.8
ECA246G1319 Erigeron canadensis HOM05D004802 ORTHO05D005591 2.6e-53 212.2 165 67.3
Potri.002G185800 Populus trichocarpa HOM05D004802 ORTHO05D005591 2.6e-53 212.2 145 77.2
AUR62008830 Chenopodium quinoa HOM05D004802 ORTHO05D005591 3.4e-53 211.8 145 75.9
MELO3C017111.2 Cucumis melo HOM05D004802 ORTHO05D005591 3.4e-53 211.8 220 55.5
Atru.chr9.2421 Acer truncatum HOM05D004802 ORTHO05D005591 4.4e-53 211.5 152 74.3
EL10Ac7g17734 Beta vulgaris HOM05D004802 ORTHO05D005591 4.4e-53 211.5 144 75.7
arahy.Tifrunner.gnm1.ann1.RYE93B Arachis hypogaea HOM05D004802 ORTHO05D005591 7.5e-53 210.7 170 67.1
FvH4_5g16620 Fragaria vesca HOM05D004802 ORTHO05D005591 9.8e-53 210.3 144 75.0
Peaxi162Scf00689g00332 Petunia axillaris HOM05D004802 ORTHO05D005591 1.3e-52 209.9 145 77.2
C05p05910 Brassica napus HOM05D005594 ORTHO05D006403 2.2e-52 209.1 140 75.0
FAN18G4009 Fragaria x ananassa HOM05D004802 ORTHO05D005591 2.9e-52 208.8 144 74.3
Ca_06425_v3 Cicer arietinum L. HOM05D000308 ORTHO05D000194 4.9e-52 208.0 145 77.2
Peaxi162Scf00017g02344 Petunia axillaris HOM05D004802 ORTHO05D005591 4.9e-52 208.0 145 78.6
Thhalv10014955m.g Eutrema salsugineum HOM05D004802 ORTHO05D005591 1.1e-51 206.8 146 76.7
Manes.15G185900 Manihot esculenta HOM05D004802 ORTHO05D005591 1.1e-51 206.8 146 75.3
Gohir.A12G276300 Gossypium hirsutum HOM05D004802 ORTHO05D005591 1.4e-51 206.5 147 78.9
Gorai.008G297400 Gossypium raimondii HOM05D004802 ORTHO05D005591 1.4e-51 206.5 147 78.9
Nitab4.5_0001422g0100 Nicotiana tabacum HOM05D004802 ORTHO05D005591 1.4e-51 206.5 117 87.2
FAN13G0264 Fragaria x ananassa HOM05D004802 ORTHO05D005591 1.8e-51 206.1 144 72.9
FAN08G2523 Fragaria x ananassa HOM05D004802 ORTHO05D005591 2.4e-51 205.7 142 74.6
Medtr5g015850 Medicago truncatula HOM05D004802 ORTHO05D005591 4.1e-51 204.9 144 73.6
Gohir.D12G276900 Gossypium hirsutum HOM05D004802 ORTHO05D005591 5.4e-51 204.5 147 78.2
Cpa.g.sc170.28 Carica papaya HOM05D004802 ORTHO05D005591 9.2e-51 203.8 133 75.2
SEGI_23384 Sequoiadendron giganteum HOM05D004802 ORTHO05D005591 6.0e-50 201.1 144 71.5
Zm00001eb378540 Zea mays HOM05D004802 ORTHO05D005591 7.8e-50 200.7 143 71.3
Os06g0128500 Oryza sativa ssp. japonica HOM05D004802 ORTHO05D005591 2.3e-49 199.1 143 75.5
Hma1.2p1_2640F.1_g325880 Hydrangea macrophylla HOM05D004802 ORTHO05D005591 3.0e-49 198.7 107 89.7
Rhsim08G0169000 Rhododendron simsii HOM05D004802 ORTHO05D005591 7.3e-48 194.1 175 61.1
Dinv25814 Davidia involucrata HOM05D004802 ORTHO05D005591 6.2e-47 191.0 109 83.5
FAN04G1836 Fragaria x ananassa HOM05D004802 ORTHO05D005591 8.9e-46 187.2 113 80.5
Nitab4.5_0008768g0020 Nicotiana tabacum HOM05D004802 ORTHO05D005591 5.8e-45 184.5 205 56.1
Haze_07452 Corylus avellana HOM05D004802 ORTHO05D005591 4.1e-43 178.3 110 80.9
ClCG06G016810 Citrullus lanatus HOM05D004802 ORTHO05D005591 1.6e-42 176.4 92 93.5
CiPaw.11G030400 Carya illinoinensis HOM05D004802 ORTHO05D005591 2.1e-42 176.0 108 82.4
QL10p013461 Quercus lobata HOM05D004802 ORTHO05D005591 5.0e-41 171.4 91 92.3
RcHm_v2.0_Chr3g0484411 Rosa chinensis HOM05D004802 ORTHO05D005591 1.5e-40 169.9 90 91.1
QL03p067058 Quercus lobata HOM05D004802 ORTHO05D005591 3.3e-40 168.7 88 93.2
Cc00_g07690 Coffea canephora HOM05D004802 ORTHO05D005591 6.2e-39 164.5 109 78.0
Nn2g12605 Nelumbo nucifera HOM05D004802 ORTHO05D005591 2.9e-36 155.6 98 83.7
Cc00_g30360 Coffea canephora HOM05D004802 ORTHO05D005591 1.3e-33 146.7 108 75.9
Nitab4.5_0000003g0430 Nicotiana tabacum HOM05D004802 ORTHO05D005591 2.5e-32 142.5 146 62.3
Pp3c17_20320 Physcomitrium patens HOM05D004802 ORTHO05D005591 3.6e-31 138.7 108 60.2
Mapoly0009s0030 Marchantia polymorpha HOM05D004802 ORTHO05D005591 1.8e-30 136.3 108 62.0
CBR_g30055 Chara braunii HOM05D004802 ORTHO05D005591 4.6e-26 121.7 108 58.3
RcHm_v2.0_Chr3g0484341 Rosa chinensis HOM05D004802 ORTHO05D005591 6.0e-26 121.3 63 95.2
Hma1.2p1_0107F.1_g051480 Hydrangea macrophylla HOM05D004802 ORTHO05D005591 8.1e-23 110.9 60 93.3
SMO228G0088 Selaginella moellendorffii HOM05D004802 ORTHO05D005591 2.9e-20 102.4 86 57.0
SHI01132 Sapria himalayana HOM05D004802 ORTHO05D005591 3.8e-20 102.1 89 60.7
AagrBONN_evm.TU.Sc2ySwM_368.3252 Anthoceros agrestis HOM05D004802 ORTHO05D005591 1.1e-19 100.5 82 61.0
CSS0004783 Camellia sinensis var. sinensis HOM05D004802 ORTHO05D005591 1.1e-16 90.5 59 78.0
A06p04970 Brassica napus HOM05D004802 ORTHO05D005591 7.3e-16 87.8 113 47.8
MCO15G004 Micromonas commoda HOM05D004802 ORTHO05D005591 1.1e-14 84.0 121 42.1
Haze_26898 Corylus avellana HOM05D004802 ORTHO05D005591 1.2e-13 80.5 87 46.0
Pp3c14_16960 Physcomitrium patens HOM05D004802 ORTHO05D005591 2.2e-12 76.3 63 58.7
A09p37440 Brassica napus HOM05D004802 ORTHO05D005591 2.1e-10 69.7 48 72.9
Haze_07453 Corylus avellana HOM05D004802 ORTHO05D005591 1.8e-09 66.6 35 88.6
RcHm_v2.0_Chr2g0130991 Rosa chinensis HOM05D004802 ORTHO05D005591 3.0e-09 65.9 67 53.7
BcaC02g11004 Brassica carinata HOM05D004802 ORTHO05D005591 3.7e-07 58.9 84 41.7
Cfa024847 Carpinus fangiana HOM05D004802 ORTHO05D005591 4.8e-07 58.5 72 43.1
C04p22280 Brassica napus HOM05D004802 ORTHO05D020149 6.2e-07 58.2 43 69.8
SHI01130 Sapria himalayana HOM05D004802 ORTHO05D005591 8.1e-07 57.8 55 52.7
PRCOL_00002926 Prasinoderma coloniale HOM05D004802 ORTHO05D005591 1.8e-06 56.6 98 39.8
A06p04960 Brassica napus HOM05D005594 ORTHO05D006403 5.3e-06 55.1 58 50.0
BolC3t13075H Brassica oleracea HOM05D004802 ORTHO05D005591 6.9e-06 54.7 29 82.8


User provided reference genes

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