Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0033615 Camellia sinensis var. sinensis HOM05D000770 ORTHO05D033899 6.6e-30 133.3 62 100.0
CSS0023538 Camellia sinensis var. sinensis HOM05D000770 ORTHO05D033899 2.8e-28 127.9 62 93.5
CSS0047080 Camellia sinensis var. sinensis HOM05D000770 ORTHO05D033899 1.4e-27 125.6 62 93.5
Oeu026013.1 Olea europaea HOM05D000770 ORTHO05D000586 3.4e-18 94.4 66 68.2
Rhsim02G0128500 Rhododendron simsii HOM05D000770 ORTHO05D000586 9.8e-18 92.8 66 68.2
Hma1.2p1_0881F.1_g232070 Hydrangea macrophylla HOM05D000770 ORTHO05D000586 1.3e-17 92.4 66 66.7
TAR626G1074 Trochodendron aralioides HOM05D000770 ORTHO05D000586 1.7e-17 92.0 66 68.2
Duzib235G1319 Durio zibethinus HOM05D000770 ORTHO05D000586 9.2e-16 86.3 66 62.1
Nitab4.5_0002158g0070 Nicotiana tabacum HOM05D000770 ORTHO05D000586 9.2e-16 86.3 66 59.1
Peaxi162Scf00461g00017 Petunia axillaris HOM05D000770 ORTHO05D000586 1.2e-15 85.9 57 63.2
Thecc.06G189500 Theobroma cacao HOM05D000770 ORTHO05D000586 1.2e-15 85.9 66 60.6
TWI38G1179 Tripterygium wilfordii HOM05D000770 ORTHO05D000586 1.6e-15 85.5 66 60.6
GSVIVG01002062001 Vitis vinifera HOM05D000770 ORTHO05D000586 1.6e-15 85.5 66 60.6
Migut.M01150 Erythranthe guttata HOM05D000770 ORTHO05D000586 2.0e-15 85.1 58 67.2
Peaxi162Scf00947g00118 Petunia axillaris HOM05D000770 ORTHO05D000586 2.0e-15 85.1 66 57.6
ECA236G1786 Erigeron canadensis HOM05D000770 ORTHO05D000586 4.6e-15 84.0 56 64.3
COL.COLO4_31492 Corchorus olitorius HOM05D000770 ORTHO05D000586 1.0e-14 82.8 66 59.1
CAN.G1164.17 Capsicum annuum HOM05D000770 ORTHO05D000586 1.3e-14 82.4 63 55.6
Dinv40546 Davidia involucrata HOM05D000770 ORTHO05D000586 1.7e-14 82.0 57 64.9
Gohir.D10G025700 Gossypium hirsutum HOM05D000770 ORTHO05D000586 1.7e-14 82.0 66 56.1
Gorai.011G027000 Gossypium raimondii HOM05D000770 ORTHO05D000586 1.7e-14 82.0 66 56.1
Solyc02g078380.3 Solanum lycopersicum HOM05D000770 ORTHO05D000586 1.7e-14 82.0 63 55.6
Sopen02g023240 Solanum pennellii HOM05D000770 ORTHO05D000586 1.7e-14 82.0 63 55.6
PGSC0003DMG400022388 Solanum tuberosum HOM05D000770 ORTHO05D000586 1.7e-14 82.0 63 55.6
Gohir.A10G025000 Gossypium hirsutum HOM05D000770 ORTHO05D000586 2.3e-14 81.6 66 56.1
Atru.chr10.1902 Acer truncatum HOM05D000770 ORTHO05D000586 6.6e-14 80.1 66 56.1
Lalb_Chr20g0121941 Lupinus albus HOM05D000770 ORTHO05D000586 1.1e-13 79.3 66 57.6
Glyma.15G073100 Glycine max HOM05D000770 ORTHO05D000586 4.3e-13 77.4 67 56.7
Oeu050842.1 Olea europaea HOM05D000770 ORTHO05D000586 4.3e-13 77.4 66 53.0
QL05p039948 Quercus lobata HOM05D000770 ORTHO05D000586 4.3e-13 77.4 65 58.5
Aqoxy1G02514 Aquilegia oxysepala HOM05D000770 ORTHO05D000586 5.6e-13 77.0 53 60.4
CiPaw.09G058500 Carya illinoinensis HOM05D000770 ORTHO05D000586 5.6e-13 77.0 57 61.4
Lalb_Chr15g0089861 Lupinus albus HOM05D000770 ORTHO05D000586 7.3e-13 76.6 66 56.1
arahy.Tifrunner.gnm1.ann1.KPLK3V Arachis hypogaea HOM05D000770 ORTHO05D000586 9.5e-13 76.3 66 53.0
Haze_06485 Corylus avellana HOM05D002535 ORTHO05D008858 9.5e-13 76.3 57 63.2
arahy.Tifrunner.gnm1.ann1.I6EE1A Arachis hypogaea HOM05D000770 ORTHO05D000586 1.2e-12 75.9 65 52.3
Cfa000431 Carpinus fangiana HOM05D002535 ORTHO05D008858 1.2e-12 75.9 57 61.4
VMungo0540G1272 Vigna mungo HOM05D000770 ORTHO05D000586 1.2e-12 75.9 67 55.2
Phvul.006G186600 Phaseolus vulgaris HOM05D000770 ORTHO05D000586 1.6e-12 75.5 63 52.4
MBI18_g16994_MAGBIO Magnolia biondii HOM05D000770 ORTHO05D000586 3.6e-12 74.3 60 55.0
RcHm_v2.0_Chr5g0008201 Rosa chinensis HOM05D000770 ORTHO05D000586 3.6e-12 74.3 62 58.1
Prupe.4G045300 Prunus persica HOM05D000770 ORTHO05D000586 4.7e-12 73.9 57 61.4
Ciclev10018115m.g Citrus clementina HOM05D000770 ORTHO05D000586 6.2e-12 73.6 66 54.5
Oeu005075.2 Olea europaea HOM05D002535 ORTHO05D008858 8.1e-12 73.2 54 63.0
MD00G1095400 Malus domestica HOM05D000770 ORTHO05D000586 1.8e-11 72.0 65 50.8
HanXRQChr04g0124091 Helianthus annuus HOM05D000770 ORTHO05D000586 6.8e-11 70.1 59 61.0
PSO675G7755 Papaver somniferum HOM05D000770 ORTHO05D000586 6.8e-11 70.1 65 52.3
CANSAT35G0325 Cannabis sativa HOM05D000770 ORTHO05D000586 2.0e-10 68.6 58 56.9
CDE08G0289 Ceratophyllum demersum HOM05D000770 ORTHO05D000586 2.0e-10 68.6 47 63.8
Lj2A287T52 Lonicera japonica HOM05D000770 ORTHO05D000586 2.6e-10 68.2 56 58.9
CSS0018801 Camellia sinensis var. sinensis HOM05D000770 ORTHO05D000586 7.1e-08 60.1 48 52.1
Potri.011G122100 Populus trichocarpa HOM05D000770 ORTHO05D000586 1.6e-07 58.9 47 51.1
Manes.15G085500 Manihot esculenta HOM05D000770 ORTHO05D000586 2.1e-07 58.5 47 51.1
Sabra16G0264700 Salix brachista HOM05D000770 ORTHO05D000586 2.1e-07 58.5 47 51.1
Duzib213G1072 Durio zibethinus HOM05D000770 ORTHO05D000586 2.7e-07 58.2 47 53.2
Gohir.D01G052900 Gossypium hirsutum HOM05D000770 ORTHO05D000586 2.7e-07 58.2 47 53.2
Gorai.002G072700 Gossypium raimondii HOM05D000770 ORTHO05D000586 2.7e-07 58.2 47 53.2
ECA234G2008 Erigeron canadensis HOM05D000770 ORTHO05D000586 3.5e-07 57.8 57 45.6
Peaxi162Scf00000g43013 Petunia axillaris HOM05D000770 ORTHO05D000586 3.5e-07 57.8 48 50.0
Potri.001G403000 Populus trichocarpa HOM05D000770 ORTHO05D000586 3.5e-07 57.8 47 48.9
Aa31LG5G10070 Aethionema arabicum HOM05D000770 ORTHO05D000586 4.6e-07 57.4 48 50.0
BcaNung03025 Brassica carinata HOM05D000770 ORTHO05D000586 4.6e-07 57.4 48 50.0
A01p18620 Brassica napus HOM05D000770 ORTHO05D000586 4.6e-07 57.4 48 50.0
C01p23640 Brassica napus HOM05D000770 ORTHO05D000586 4.6e-07 57.4 48 50.0
BolC1t02307H Brassica oleracea HOM05D000770 ORTHO05D000586 4.6e-07 57.4 48 50.0
BraA01t01812Z Brassica rapa HOM05D000770 ORTHO05D000586 4.6e-07 57.4 48 50.0
HanXRQChr16g0511221 Helianthus annuus HOM05D000770 ORTHO05D000586 4.6e-07 57.4 48 50.0
Nitab4.5_0009946g0020 Nicotiana tabacum HOM05D000770 ORTHO05D000586 4.6e-07 57.4 52 46.2
Sp7g25400 Schrenkiella parvula HOM05D000770 ORTHO05D000586 4.6e-07 57.4 48 50.0
THA.LOC104811858 Tarenaya hassleriana HOM05D000770 ORTHO05D000586 4.6e-07 57.4 48 50.0
unitig_578.g15968 Utricularia gibba HOM05D000770 ORTHO05D000586 4.6e-07 57.4 54 46.3
ClCG11G018200 Citrullus lanatus HOM05D000770 ORTHO05D000586 6.0e-07 57.0 48 50.0
MELO3C016712.2 Cucumis melo HOM05D000770 ORTHO05D000586 6.0e-07 57.0 48 50.0
CsaV3_4G033850 Cucumis sativus L. HOM05D000770 ORTHO05D000586 6.0e-07 57.0 48 50.0
Migut.M00856 Erythranthe guttata HOM05D000770 ORTHO05D000586 6.0e-07 57.0 47 51.1
FvH4_3g20560 Fragaria vesca HOM05D000770 ORTHO05D000586 7.8e-07 56.6 52 48.1
FAN11G0564 Fragaria x ananassa HOM05D000770 ORTHO05D000586 7.8e-07 56.6 52 48.1
FAN16G1586 Fragaria x ananassa HOM05D000770 ORTHO05D000586 7.8e-07 56.6 52 48.1
Gohir.A01G065500 Gossypium hirsutum HOM05D000770 ORTHO05D000586 7.8e-07 56.6 47 51.1
Ah.06g183880 Amaranthus hybridus HOM05D000770 ORTHO05D000586 1.0e-06 56.2 48 47.9
Duzib268G1690 Durio zibethinus HOM05D000770 ORTHO05D000586 1.0e-06 56.2 47 51.1
FAN21G2007 Fragaria x ananassa HOM05D000770 ORTHO05D000586 1.0e-06 56.2 48 50.0
FAN25G2120 Fragaria x ananassa HOM05D000770 ORTHO05D000586 1.0e-06 56.2 48 50.0
BcaC07g38281 Brassica carinata HOM05D000770 ORTHO05D000586 1.3e-06 55.8 48 47.9
A08p20480 Brassica napus HOM05D000770 ORTHO05D000586 1.3e-06 55.8 48 47.9
C08p10270 Brassica napus HOM05D000770 ORTHO05D000586 1.3e-06 55.8 48 47.9
BolC8t48705H Brassica oleracea HOM05D000770 ORTHO05D000586 1.3e-06 55.8 48 47.9
BraA08t34004Z Brassica rapa HOM05D000770 ORTHO05D000586 1.3e-06 55.8 48 47.9
Cpa.g.sc80.38 Carica papaya HOM05D000770 ORTHO05D000586 1.3e-06 55.8 47 51.1
Cc05_g12340 Coffea canephora HOM05D000770 ORTHO05D000586 1.3e-06 55.8 52 46.2
Thhalv10026074m.g Eutrema salsugineum HOM05D000770 ORTHO05D000586 1.3e-06 55.8 48 47.9
PGR083G2267 Punica granatum HOM05D000770 ORTHO05D000586 1.3e-06 55.8 47 48.9
QL08p019765 Quercus lobata HOM05D000770 ORTHO05D000586 1.3e-06 55.8 48 47.9
AL7G25320 Arabidopsis lyrata HOM05D000770 ORTHO05D000586 1.7e-06 55.5 48 47.9
AT4G27450 Arabidopsis thaliana HOM05D000770 ORTHO05D000586 1.7e-06 55.5 48 47.9
EL10Ac4g08120 Beta vulgaris HOM05D000770 ORTHO05D000586 1.7e-06 55.5 47 48.9
CAN.G708.5 Capsicum annuum HOM05D000770 ORTHO05D000586 1.7e-06 55.5 48 45.8
Ciclev10009261m.g Citrus clementina HOM05D000770 ORTHO05D000586 1.7e-06 55.5 47 51.1
Solyc12g013700.2 Solanum lycopersicum HOM05D000770 ORTHO05D000586 1.7e-06 55.5 52 44.2
Sopen12g007050 Solanum pennellii HOM05D000770 ORTHO05D000586 1.7e-06 55.5 52 44.2
TWI39G0499 Tripterygium wilfordii HOM05D000770 ORTHO05D000586 1.7e-06 55.5 47 51.1
Carub.0007s1340 Capsella rubella HOM05D000770 ORTHO05D000586 2.3e-06 55.1 47 48.9
CARHR235130 Cardamine hirsuta HOM05D000770 ORTHO05D000586 2.3e-06 55.1 48 47.9
Hma1.2p1_0881F.1_g231980 Hydrangea macrophylla HOM05D000770 ORTHO05D000586 2.3e-06 55.1 48 47.9
Lj3g0019739 Lotus japonicus HOM05D000770 ORTHO05D000586 2.3e-06 55.1 47 48.9
MD03G1224100 Malus domestica HOM05D000770 ORTHO05D000586 2.3e-06 55.1 47 48.9
Oeu030442.1 Olea europaea HOM05D000770 ORTHO05D000586 2.3e-06 55.1 48 47.9
Rhsim02G0127500 Rhododendron simsii HOM05D000770 ORTHO05D000586 2.3e-06 55.1 48 45.8
SGA_v2.0_scaffold73G24294 Striga asiatica HOM05D000770 ORTHO05D000586 2.3e-06 55.1 47 48.9
vmacro11839 Vaccinium macrocarpon HOM05D000770 ORTHO05D000586 2.3e-06 55.1 48 47.9
vmacro11843 Vaccinium macrocarpon HOM05D000770 ORTHO05D000586 2.3e-06 55.1 48 47.9
vmacro15895 Vaccinium macrocarpon HOM05D000770 ORTHO05D000586 2.3e-06 55.1 48 45.8
Oeu008017.1 Olea europaea HOM05D000770 ORTHO05D000586 3.0e-06 54.7 48 50.0
RcHm_v2.0_Chr5g0034571 Rosa chinensis HOM05D000770 ORTHO05D000586 3.0e-06 54.7 48 47.9
Hund22950 Selenicereus undatus HOM05D000770 ORTHO05D000586 3.0e-06 54.7 52 44.2
Zm00001eb433870 Zea mays HOM05D000770 ORTHO05D000586 3.0e-06 54.7 47 44.7
Glyma.12G150500 Glycine max HOM05D000770 ORTHO05D000586 3.9e-06 54.3 47 48.9
Lalb_Chr25g0286551 Lupinus albus HOM05D000770 ORTHO05D000586 3.9e-06 54.3 47 46.8
Sabra11G0108100 Salix brachista HOM05D000770 ORTHO05D000586 3.9e-06 54.3 47 46.8
unitig_8.g4553 Utricularia gibba HOM05D000770 ORTHO05D000586 3.9e-06 54.3 48 45.8
arahy.Tifrunner.gnm1.ann1.438HD4 Arachis hypogaea HOM05D000770 ORTHO05D000586 5.1e-06 53.9 47 46.8
MSTRG.6846 Avicennia marina HOM05D000770 ORTHO05D000586 5.1e-06 53.9 47 48.9
CANSAT56G1554 Cannabis sativa HOM05D000770 ORTHO05D000586 5.1e-06 53.9 47 46.8
CiPaw.11G173100 Carya illinoinensis HOM05D000770 ORTHO05D000586 5.1e-06 53.9 47 46.8
COL.COLO4_09431 Corchorus olitorius HOM05D000770 ORTHO05D000586 5.1e-06 53.9 47 51.1
Lj1A848T58 Lonicera japonica HOM05D000770 ORTHO05D000586 5.1e-06 53.9 47 48.9
Medtr2g079670 Medicago truncatula HOM05D000770 ORTHO05D000586 5.1e-06 53.9 47 48.9
Phvul.005G083400 Phaseolus vulgaris HOM05D000770 ORTHO05D000586 5.1e-06 53.9 47 46.8
Rhsim06G0196500 Rhododendron simsii HOM05D000770 ORTHO05D000586 5.1e-06 53.9 47 46.8
VMungo1080G0090 Vigna mungo HOM05D000770 ORTHO05D000586 5.1e-06 53.9 47 46.8
Actinidia39451 Actinidia chinensis HOM05D000770 ORTHO05D000586 6.6e-06 53.5 48 41.7
arahy.Tifrunner.gnm1.ann1.7X1NZD Arachis hypogaea HOM05D000770 ORTHO05D000586 6.6e-06 53.5 47 46.8
arahy.Tifrunner.gnm1.ann1.AUV3TU Arachis hypogaea HOM05D000770 ORTHO05D000586 6.6e-06 53.5 47 46.8
MSTRG.13185 Avicennia marina HOM05D000770 ORTHO05D000586 6.6e-06 53.5 48 43.8
ECA248G0535 Erigeron canadensis HOM05D000770 ORTHO05D000586 6.6e-06 53.5 48 43.8
Glyma.12G222400 Glycine max HOM05D000770 ORTHO05D000586 6.6e-06 53.5 47 46.8
Glyma.13G279200 Glycine max HOM05D000770 ORTHO05D000586 6.6e-06 53.5 47 46.8
Nitab4.5_0000662g0180 Nicotiana tabacum HOM05D000770 ORTHO05D000586 6.6e-06 53.5 52 42.3
Oeu043699.1 Olea europaea HOM05D000770 ORTHO05D000586 6.6e-06 53.5 48 45.8
TPR.G20496 Trifolium pratense HOM05D000770 ORTHO05D000586 6.6e-06 53.5 47 46.8
TAR629G1270 Trochodendron aralioides HOM05D000770 ORTHO05D000586 6.6e-06 53.5 47 46.8
Atru.chr2.2735 Acer truncatum HOM05D000770 ORTHO05D000586 8.6e-06 53.1 47 46.8
AUR62029354 Chenopodium quinoa HOM05D000770 ORTHO05D000586 8.6e-06 53.1 48 43.8
AUR62034235 Chenopodium quinoa HOM05D000770 ORTHO05D000586 8.6e-06 53.1 48 43.8
ECA246G4115 Erigeron canadensis HOM05D000770 ORTHO05D000586 8.6e-06 53.1 47 46.8
MD11G1241900 Malus domestica HOM05D000770 ORTHO05D000586 8.6e-06 53.1 47 46.8
Prupe.4G185400 Prunus persica HOM05D000770 ORTHO05D000586 8.6e-06 53.1 47 46.8
Sp1g39510 Schrenkiella parvula HOM05D000770 ORTHO05D000586 8.6e-06 53.1 48 47.9


User provided reference genes

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