Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0033596 Camellia sinensis var. sinensis HOM05D005077 ORTHO05D006889 0.0e+00 1508.8 742 100.0
Actinidia39994 Actinidia chinensis HOM05D005077 ORTHO05D006889 0.0e+00 1105.5 675 81.6
Rhsim05G0172000 Rhododendron simsii HOM05D005077 ORTHO05D006889 1.0e-294 1016.5 697 74.5
vmacro19987 Vaccinium macrocarpon HOM05D005077 ORTHO05D006889 4.1e-288 994.6 759 68.6
GSVIVG01023486001 Vitis vinifera HOM05D005077 ORTHO05D006889 2.1e-276 955.7 676 71.2
TAR362G0145 Trochodendron aralioides HOM05D005077 ORTHO05D006889 5.2e-275 951.0 674 70.9
Cfa006359 Carpinus fangiana HOM05D005077 ORTHO05D006889 2.5e-269 932.2 672 69.2
Duzib177G0384 Durio zibethinus HOM05D005077 ORTHO05D006889 1.1e-267 926.8 675 69.2
CiPaw.07G073200 Carya illinoinensis HOM05D005077 ORTHO05D006889 6.9e-267 924.1 672 68.5
Thecc.05G270400 Theobroma cacao HOM05D005077 ORTHO05D006889 9.9e-266 920.2 675 68.9
Manes.08G139800 Manihot esculenta HOM05D005077 ORTHO05D006889 2.9e-265 918.7 670 69.3
Prupe.6G350500 Prunus persica HOM05D005077 ORTHO05D006889 4.9e-265 917.9 676 68.3
Gohir.D11G257100 Gossypium hirsutum HOM05D005077 ORTHO05D006889 5.4e-264 914.4 675 68.6
Gorai.007G275500 Gossypium raimondii HOM05D005077 ORTHO05D006889 7.1e-264 914.1 675 68.4
Potri.013G047400 Populus trichocarpa HOM05D005077 ORTHO05D006889 8.7e-262 907.1 672 68.9
CANSAT54G1999 Cannabis sativa HOM05D005077 ORTHO05D006889 6.2e-260 901.0 672 66.7
Cpa.g.sc306.8 Carica papaya HOM05D005077 ORTHO05D006889 1.1e-259 900.2 660 67.4
Oeu006006.2 Olea europaea HOM05D005077 ORTHO05D006889 2.4e-259 899.0 674 66.5
Potri.019G019600 Populus trichocarpa HOM05D005077 ORTHO05D006889 3.1e-259 898.7 672 67.4
Solyc04g010080.3 Solanum lycopersicum HOM05D005077 ORTHO05D006889 2.2e-257 892.5 674 69.0
Sopen04g005220 Solanum pennellii HOM05D005077 ORTHO05D006889 1.9e-256 889.4 678 68.6
Lj2A44T74 Lonicera japonica HOM05D005077 ORTHO05D006889 2.4e-256 889.0 729 63.1
MD04G1230700 Malus domestica HOM05D005077 ORTHO05D006889 3.2e-256 888.6 670 67.3
FvH4_6g01810 Fragaria vesca HOM05D005077 ORTHO05D006889 6.0e-255 884.4 670 66.3
Atru.chr2.993 Acer truncatum HOM05D005077 ORTHO05D006889 5.6e-253 877.9 607 72.7
PGSC0003DMG400011494 Solanum tuberosum HOM05D005077 ORTHO05D006889 9.6e-253 877.1 703 66.1
Nitab4.5_0006737g0070 Nicotiana tabacum HOM05D005077 ORTHO05D006889 1.6e-252 876.3 684 65.9
Migut.F00798 Erythranthe guttata HOM05D005077 ORTHO05D006889 2.1e-252 875.9 675 64.9
HanXRQChr14g0454211 Helianthus annuus HOM05D005077 ORTHO05D006889 6.2e-252 874.4 674 66.2
SalBow3G3009 Salvia bowleyana HOM05D005077 ORTHO05D006889 8.1e-252 874.0 675 65.5
Nn1g02888 Nelumbo nucifera HOM05D005077 ORTHO05D006889 1.1e-251 873.6 678 65.3
ECA238G3062 Erigeron canadensis HOM05D005077 ORTHO05D006889 6.9e-251 870.9 676 66.0
Glyma.19G115700 Glycine max HOM05D005077 ORTHO05D006889 2.6e-250 869.0 678 64.5
RcHm_v2.0_Chr3g0449521 Rosa chinensis HOM05D005077 ORTHO05D006889 7.6e-250 867.5 670 65.7
Lj1g0022218 Lotus japonicus HOM05D005077 ORTHO05D006889 3.8e-249 865.1 676 64.6
MSTRG.27374 Avicennia marina HOM05D005077 ORTHO05D006889 1.9e-248 862.8 677 64.7
COL.COLO4_15493 Corchorus olitorius HOM05D005077 ORTHO05D006889 3.5e-247 858.6 695 64.3
VMungo1383G1518 Vigna mungo HOM05D005077 ORTHO05D006889 4.6e-247 858.2 674 63.6
Medtr7g111650 Medicago truncatula HOM05D005077 ORTHO05D006889 7.9e-247 857.4 676 63.5
TWI36G1092 Tripterygium wilfordii HOM05D005077 ORTHO05D006889 7.9e-247 857.4 672 65.6
CARHR078630 Cardamine hirsuta HOM05D005077 ORTHO05D006889 4.3e-245 851.7 670 65.1
Dinv35947 Davidia involucrata HOM05D005077 ORTHO05D006889 7.4e-245 850.9 569 76.3
PSO832G3809 Papaver somniferum HOM05D005077 ORTHO05D006889 9.6e-245 850.5 673 64.6
PSO210G4243 Papaver somniferum HOM05D005077 ORTHO05D006889 4.8e-244 848.2 673 64.2
Phvul.001G114900 Phaseolus vulgaris HOM05D005077 ORTHO05D006889 1.5e-242 843.2 677 63.1
Sc20g0000660 Simmondsia chinensis HOM05D005077 ORTHO05D006889 2.6e-242 842.4 671 63.9
Ca_08303_v3 Cicer arietinum L. HOM05D005077 ORTHO05D006889 2.2e-241 839.3 708 61.6
PGR142G0621 Punica granatum HOM05D005077 ORTHO05D006889 2.9e-241 839.0 671 64.4
Psat3g087440 Pisum sativum HOM05D005077 ORTHO05D006889 1.9e-240 836.3 674 62.5
MBI10_g13801_MAGBIO Magnolia biondii HOM05D005077 ORTHO05D006889 2.7e-239 832.4 657 64.5
TPR.G4698 Trifolium pratense HOM05D005077 ORTHO05D006889 6.0e-239 831.2 677 62.3
THA.LOC104827285 Tarenaya hassleriana HOM05D005077 ORTHO05D006889 7.9e-239 830.9 670 62.8
FAN14G3018 Fragaria x ananassa HOM05D005077 ORTHO05D006889 1.0e-238 830.5 706 61.5
Eucgr.B02151 Eucalyptus grandis HOM05D005077 ORTHO05D006889 1.3e-238 830.1 675 63.0
Thhalv10020155m.g Eutrema salsugineum HOM05D005077 ORTHO05D006889 1.3e-238 830.1 673 63.4
FAN09G0372 Fragaria x ananassa HOM05D005077 ORTHO05D006889 3.9e-238 828.6 705 61.1
EL10Ac9g21459 Beta vulgaris HOM05D005077 ORTHO05D006889 8.7e-238 827.4 672 62.8
Carub.0003s0364 Capsella rubella HOM05D005077 ORTHO05D006889 1.5e-237 826.6 674 62.8
Aqoxy5G00195 Aquilegia oxysepala HOM05D005077 ORTHO05D006889 1.6e-236 823.2 678 62.7
FAN14G2113 Fragaria x ananassa HOM05D005077 ORTHO05D006889 6.3e-236 821.2 708 60.6
Sed0014730 Sechium edule HOM05D005077 ORTHO05D006889 6.3e-236 821.2 675 61.9
AL3G14430 Arabidopsis lyrata HOM05D005077 ORTHO05D006889 1.1e-235 820.5 673 63.3
AT3G04480 Arabidopsis thaliana HOM05D005077 ORTHO05D006889 3.1e-235 818.9 673 62.6
Lsat_1_v5_gn_2_108321 Lactuca sativa HOM05D005077 ORTHO05D006889 1.5e-234 816.6 669 62.6
Aa31LG5G14920 Aethionema arabicum HOM05D005077 ORTHO05D006889 3.4e-234 815.5 689 61.7
MELO3C008703.2 Cucumis melo HOM05D005077 ORTHO05D006889 7.7e-234 814.3 680 62.2
BcaB04g19332 Brassica carinata HOM05D005077 ORTHO05D006889 1.7e-233 813.1 673 62.9
C05p62770 Brassica napus HOM05D005077 ORTHO05D006889 6.5e-233 811.2 670 62.2
BraA03t12537Z Brassica rapa HOM05D005077 ORTHO05D006889 1.1e-232 810.4 670 62.7
BolC5t34930H Brassica oleracea HOM05D005077 ORTHO05D006889 2.5e-232 809.3 670 62.1
Sabra19G0032000 Salix brachista HOM05D005077 ORTHO05D006889 1.2e-231 807.0 755 58.1
BcaC05g30222 Brassica carinata HOM05D005077 ORTHO05D006889 2.7e-231 805.8 704 60.9
Sabra13G0043400 Salix brachista HOM05D005077 ORTHO05D006889 7.9e-231 804.3 693 61.6
A05p43000 Brassica napus HOM05D005077 ORTHO05D006889 1.4e-230 803.5 672 62.6
Hund06905 Selenicereus undatus HOM05D005077 ORTHO05D006889 2.3e-230 802.7 682 61.1
BraA05t23044Z Brassica rapa HOM05D005077 ORTHO05D006889 6.7e-230 801.2 676 62.1
BcaC05g29939 Brassica carinata HOM05D005077 ORTHO05D006889 5.7e-229 798.1 667 61.8
ClCG11G010550 Citrullus lanatus HOM05D005077 ORTHO05D006889 9.7e-229 797.3 677 61.2
A03p33620 Brassica napus HOM05D005077 ORTHO05D006889 1.3e-228 797.0 671 62.3
Ciclev10019185m.g Citrus clementina HOM05D005077 ORTHO05D006889 1.7e-228 796.6 599 66.8
BcaC01g04375 Brassica carinata HOM05D005077 ORTHO05D006889 2.4e-227 792.7 673 62.4
C03p40820 Brassica napus HOM05D005077 ORTHO05D006889 2.4e-227 792.7 673 62.4
arahy.Tifrunner.gnm1.ann1.2V8KIQ Arachis hypogaea HOM05D005077 ORTHO05D006889 1.7e-225 786.6 678 60.0
BolC3t16351H Brassica oleracea HOM05D005077 ORTHO05D006889 5.0e-225 785.0 680 61.5
DCAR_003547 Daucus carota HOM05D005077 ORTHO05D006889 3.6e-223 778.9 684 60.7
ATR0736G030 Amborella trichopoda HOM05D005077 ORTHO05D006889 4.7e-223 778.5 672 59.8
QL07p018541 Quercus lobata HOM05D005077 ORTHO05D006889 3.9e-222 775.4 588 66.7
AUR62013106 Chenopodium quinoa HOM05D005077 ORTHO05D006889 7.4e-221 771.2 695 59.0
Gohir.A11G246900 Gossypium hirsutum HOM05D005077 ORTHO05D006889 5.9e-218 761.5 598 65.6
Cc02_g08770 Coffea canephora HOM05D005077 ORTHO05D006889 1.3e-217 760.4 596 65.1
Hma1.2p1_0114F.1_g055300 Hydrangea macrophylla HOM05D005077 ORTHO05D006889 1.3e-212 743.8 622 62.5
HPP92_014753 Vanilla planifolia HOM05D005077 ORTHO05D006889 1.7e-212 743.4 668 57.9
SGA_v2.0_scaffold1G00651 Striga asiatica HOM05D005077 ORTHO05D006889 1.1e-211 740.7 750 53.5
Peaxi162Scf00528g00225 Petunia axillaris HOM05D005077 ORTHO05D006889 3.1e-211 739.2 674 60.1
Os02g0810450 Oryza sativa ssp. japonica HOM05D005077 ORTHO05D006889 2.0e-210 736.5 679 57.4
CAN.G786.40 Capsicum annuum HOM05D005077 ORTHO05D006889 4.2e-208 728.8 609 64.2
Lalb_Chr22g0358841 Lupinus albus HOM05D005077 ORTHO05D006889 8.0e-207 724.5 596 60.9
Nitab4.5_0003780g0090 Nicotiana tabacum HOM05D005077 ORTHO05D006889 1.0e-206 724.2 664 58.9
BcaC05g30195 Brassica carinata HOM05D005077 ORTHO05D006889 5.7e-205 718.4 670 57.3
arahy.Tifrunner.gnm1.ann1.FVV1VG Arachis hypogaea HOM05D005077 ORTHO05D006889 1.6e-202 710.3 695 55.0
arahy.Tifrunner.gnm1.ann1.BW8NI8 Arachis hypogaea HOM05D005077 ORTHO05D006889 8.0e-199 698.0 690 54.1
arahy.Tifrunner.gnm1.ann1.2UET99 Arachis hypogaea HOM05D005077 ORTHO05D006889 2.5e-192 676.4 678 54.6
CsaV3_2G009810 Cucumis sativus L. HOM05D005077 ORTHO05D006889 2.0e-189 666.8 593 59.7
unitig_748.g6990 Utricularia gibba HOM05D005077 ORTHO05D006889 3.4e-181 639.4 666 52.3
CDE07G0212 Ceratophyllum demersum HOM05D005077 ORTHO05D006889 1.2e-178 630.9 669 51.9
Haze_04419 Corylus avellana HOM05D005077 ORTHO05D006889 6.4e-164 582.0 849 43.1
arahy.Tifrunner.gnm1.ann1.CACA61 Arachis hypogaea HOM05D005077 ORTHO05D006889 7.1e-163 578.6 702 48.3
Oeu041238.1 Olea europaea HOM05D005077 ORTHO05D006889 1.0e-161 574.7 464 63.8
AagrBONN_evm.TU.Sc2ySwM_362.1555 Anthoceros agrestis HOM05D005077 ORTHO05D006889 1.2e-159 567.8 589 53.1
Pp3c11_830 Physcomitrium patens HOM05D005077 ORTHO05D006889 4.9e-156 555.8 585 52.0
Zm00001eb258450 Zea mays HOM05D005077 ORTHO05D006889 9.0e-150 535.0 574 53.0
Mapoly0027s0145 Marchantia polymorpha HOM05D005077 ORTHO05D006889 8.4e-148 528.5 595 48.6
CBR_g3613 Chara braunii HOM05D005077 ORTHO05D006889 1.4e-147 527.7 616 48.1
Sp3g03330 Schrenkiella parvula HOM05D005077 ORTHO05D006889 3.5e-146 523.1 492 56.9
SMO348G0068 Selaginella moellendorffii HOM05D005077 ORTHO05D006889 4.6e-146 522.7 553 53.2
Eucgr.B02424 Eucalyptus grandis HOM05D005077 ORTHO05D006889 3.0e-137 493.4 456 56.4
SEGI_09343 Sequoiadendron giganteum HOM05D005077 ORTHO05D006889 3.4e-125 453.4 394 59.6
AUR62010111 Chenopodium quinoa HOM05D005077 ORTHO05D006889 6.1e-114 416.0 400 55.2
PGSC0003DMG400019115 Solanum tuberosum HOM05D005077 ORTHO05D006889 5.2e-89 333.2 352 54.5
MCO10G045 Micromonas commoda HOM05D005077 ORTHO05D006889 8.0e-82 309.3 653 33.7
Cre01.g033091 Chlamydomonas reinhardtii HOM05D005077 ORTHO05D006889 7.0e-70 269.6 703 30.3
PRCOL_00005667 Prasinoderma coloniale HOM05D005077 ORTHO05D006889 1.8e-65 255.0 537 33.7
SEGI_01626 Sequoiadendron giganteum HOM05D005077 ORTHO05D006889 8.9e-57 226.1 300 43.0
SEGI_03702 Sequoiadendron giganteum HOM05D005077 ORTHO05D006889 1.9e-54 218.4 228 50.4
SEGI_18706 Sequoiadendron giganteum HOM05D005077 ORTHO05D006889 1.9e-54 218.4 228 50.4
FAN05G0362 Fragaria x ananassa HOM05D005077 ORTHO05D006889 8.1e-50 203.0 146 67.1
SHI22754 Sapria himalayana HOM05D005077 ORTHO05D006889 2.9e-47 194.5 151 68.2
Cfa026934 Carpinus fangiana HOM05D005077 ORTHO05D006889 6.4e-47 193.4 579 29.0
Duzib106G1915 Durio zibethinus HOM05D005077 ORTHO05D006889 9.9e-40 169.5 173 52.6
BcaC01g04372 Brassica carinata HOM05D003677 ORTHO05D004231 2.5e-35 154.8 102 75.5
Lalb_Chr22g0358851 Lupinus albus HOM05D005077 ORTHO05D006889 2.8e-34 151.4 77 90.9
Cc02_g08780 Coffea canephora HOM05D005077 ORTHO05D006889 5.3e-33 147.1 77 89.6
QL07p018546 Quercus lobata HOM05D005077 ORTHO05D006889 2.0e-32 145.2 77 83.1
FAN05G3606 Fragaria x ananassa HOM05D005077 ORTHO05D019498 6.4e-23 113.6 116 47.4
C08p13010 Brassica napus HOM05D005077 ORTHO05D006889 1.9e-22 112.1 56 91.1
arahy.Tifrunner.gnm1.ann1.TVQ2CS Arachis hypogaea HOM05D005077 ORTHO05D006889 2.4e-17 95.1 199 35.2
Peaxi162Scf00528g00025 Petunia axillaris HOM05D000011 ORTHO05D015719 1.5e-16 92.4 65 67.7
EL10Ac5g11645 Beta vulgaris HOM05D005077 ORTHO05D006889 6.5e-15 87.0 47 80.9
BcaC05g29940 Brassica carinata HOM05D005077 ORTHO05D018175 1.8e-12 79.0 61 70.5
Hund05190 Selenicereus undatus HOM05D005077 ORTHO05D006889 3.1e-09 68.2 56 60.7


User provided reference genes

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